Wall clock time and date at job start Tue Mar 31 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.29416 * 125.69263 * 59.69331 * 4 2 1 6 6 N 1.26403 * 116.47053 * 179.77079 * 5 4 2 7 7 C 1.29411 * 116.47490 * 0.53306 * 6 5 4 8 8 C 1.50706 * 125.69644 * 179.68222 * 7 6 5 9 9 S 1.81397 * 109.47228 * 90.03782 * 8 7 6 10 10 O 1.42094 * 109.47044 * 296.38883 * 9 8 7 11 11 C 1.81396 * 102.99810 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.47224 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47465 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99574 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00087 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00104 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 120.00132 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46609 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47144 * 119.99424 * 17 15 13 20 20 H 1.48492 * 109.47034 * 239.99812 * 17 15 13 21 21 S 1.71212 * 125.69778 * 240.00161 * 4 2 1 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.09003 * 109.47015 * 210.04243 * 8 7 6 30 30 H 1.09004 * 109.46835 * 330.03979 * 8 7 6 31 31 H 1.09007 * 109.47436 * 299.99721 * 11 9 8 32 32 H 1.08998 * 109.47671 * 60.00434 * 11 9 8 33 33 H 1.09002 * 109.47079 * 300.00273 * 12 11 9 34 34 H 1.09001 * 109.47203 * 59.99550 * 12 11 9 35 35 H 0.97003 * 119.99544 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7839 -0.3688 -2.4538 6 7 2.2999 -1.0887 -3.3557 7 6 3.0104 -2.0936 -2.9556 8 6 3.7110 -3.0858 -3.8478 9 16 5.3892 -2.4973 -4.2057 10 8 5.3186 -1.2793 -4.9341 11 6 6.0598 -3.8015 -5.2733 12 6 7.4951 -3.4489 -5.6691 13 6 8.0520 -4.5320 -6.5566 14 1 7.4433 -5.3867 -6.8123 15 6 9.3390 -4.4324 -7.0411 16 7 10.0803 -3.3918 -6.7292 17 14 10.0297 -5.7754 -8.1406 18 1 9.0026 -6.8295 -8.3390 19 1 10.4043 -5.1951 -9.4551 20 1 11.2310 -6.3695 -7.5012 21 16 3.0207 -2.1083 -1.2436 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 3.7641 -4.0518 -3.3456 30 1 3.1563 -3.1910 -4.7802 31 1 6.0542 -4.7499 -4.7358 32 1 5.4463 -3.8885 -6.1700 33 1 7.5012 -2.5005 -6.2064 34 1 8.1085 -3.3622 -4.7723 35 1 10.9859 -3.3220 -7.0699 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596039706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:38 Heat of formation + Delta-G solvation = 3.847810 kcal Electronic energy + Delta-G solvation = -17595.665888 eV Core-core repulsion = 14654.237555 eV Total energy + Delta-G solvation = -2941.428333 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.41512 -36.29205 -35.30325 -33.73778 -32.64239 -30.95737 -28.68250 -27.52584 -25.83078 -25.20742 -22.69060 -21.29593 -19.50632 -19.17577 -17.23104 -16.64403 -16.04059 -15.87620 -15.14811 -14.65433 -14.54187 -14.50189 -14.22309 -13.64165 -13.44990 -13.22168 -13.04204 -12.51026 -12.39202 -12.02851 -11.81234 -11.64368 -11.51170 -11.38376 -11.03450 -10.78746 -10.55708 -10.39667 -10.21943 -10.19725 -9.89674 -9.84074 -9.46562 -9.00462 -8.46074 -7.87678 -6.08702 -4.13264 0.25578 0.72927 1.20007 1.75682 2.57973 2.95436 3.26309 3.34093 3.37437 3.71455 4.07130 4.25457 4.39598 4.44799 4.67458 4.79866 4.88086 5.22172 5.26601 5.28998 5.29801 5.46016 5.49410 5.56500 5.61564 5.85514 5.86920 5.95612 6.03418 6.70931 7.42664 7.54109 7.86108 8.26168 8.49633 8.91554 9.51335 11.01966 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.051182 B = 0.002928 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.932166 B = 9559.107430 C = 9685.703764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.143 4.143 4 C -0.021 4.021 5 N -0.252 5.252 6 N -0.256 5.256 7 C 0.017 3.983 8 C -0.389 4.389 9 S 1.231 4.769 10 O -0.826 6.826 11 C -0.414 4.414 12 C 0.037 3.963 13 C -0.519 4.519 14 H 0.059 0.941 15 C 0.057 3.943 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 S 0.167 5.833 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.024 0.976 34 H 0.029 0.971 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.588 1.552 19.398 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.300 4.300 5 N -0.088 5.088 6 N -0.094 5.094 7 C -0.262 4.262 8 C -0.524 4.524 9 S 1.427 4.573 10 O -0.821 6.821 11 C -0.555 4.555 12 C -0.001 4.001 13 C -0.559 4.559 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 S 0.412 5.588 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.203 2.670 19.416 24.804 hybrid contribution -0.733 -1.056 -2.755 3.040 sum -15.935 1.614 16.661 23.111 Atomic orbital electron populations 1.21830 0.92631 1.02462 1.03118 1.19760 0.96980 0.96151 0.90334 1.21847 1.01557 0.93719 1.03109 1.29267 1.02012 0.99356 0.99401 1.71370 1.18572 1.22702 0.96203 1.71498 1.08709 1.02656 1.26571 1.28237 1.02039 0.99880 0.96061 1.26653 1.20563 1.02149 1.03068 1.70806 0.87919 0.84831 1.13715 1.93160 1.79725 1.33762 1.75417 1.27623 1.07669 1.10833 1.09342 1.18818 0.85935 0.97979 0.97404 1.21159 0.98339 1.06221 1.30142 0.92324 1.25052 0.97063 0.95912 0.96460 1.69970 1.09339 1.28737 1.45024 0.86474 0.78994 0.81780 0.80402 1.19717 1.20945 1.20794 1.83524 1.45943 1.25058 1.04280 0.91362 0.92462 0.91291 0.88875 0.91283 0.92157 0.91328 0.84357 0.86448 0.87223 0.90384 0.95771 0.95239 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 2 C -0.01 -0.07 3.37 -91.77 -0.31 -0.38 16 3 C -0.14 -1.08 9.18 37.16 0.34 -0.74 16 4 C -0.02 -0.24 6.04 -13.29 -0.08 -0.32 16 5 N -0.25 -3.87 11.66 32.58 0.38 -3.49 16 6 N -0.26 -4.42 11.66 32.58 0.38 -4.04 16 7 C 0.02 0.23 6.79 -13.29 -0.09 0.14 16 8 C -0.39 -4.90 6.52 36.01 0.23 -4.67 16 9 S 1.23 19.54 13.14 -107.50 -1.41 18.12 16 10 O -0.83 -18.96 18.14 -35.23 -0.64 -19.60 16 11 C -0.41 -7.72 5.86 37.16 0.22 -7.50 16 12 C 0.04 0.93 4.98 -27.88 -0.14 0.80 16 13 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 S 0.17 1.65 23.04 -107.50 -2.48 -0.83 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.14 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.12 1.60 8.14 -51.92 -0.42 1.18 16 31 H 0.11 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -37.98 330.15 -8.01 -45.99 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -5.04 Total: -5.19 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 0.11 Total: -26.45 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 1.50 Total: -33.28 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.64 Total: -19.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 21.18 SS G_CDS: -3.89 Total: 17.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.98 -8.01 -45.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596039706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.838 kcal (2) G-P(sol) polarization free energy of solvation -37.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds