Wall clock time and date at job start Tue Mar 31 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.29416 * 125.69263 * 59.69331 * 4 2 1 6 6 N 1.26403 * 116.47053 * 179.77079 * 5 4 2 7 7 C 1.29411 * 116.47490 * 0.53306 * 6 5 4 8 8 C 1.50706 * 125.69644 * 179.68222 * 7 6 5 9 9 S 1.81397 * 109.47228 * 90.03782 * 8 7 6 10 10 O 1.42094 * 109.47044 * 296.38883 * 9 8 7 11 11 C 1.81396 * 102.99810 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.47224 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47465 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99574 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00087 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00104 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 120.00132 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46609 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47144 * 119.99424 * 17 15 13 20 20 H 1.48492 * 109.47034 * 239.99812 * 17 15 13 21 21 S 1.71212 * 125.69778 * 240.00161 * 4 2 1 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.09003 * 109.47015 * 210.04243 * 8 7 6 30 30 H 1.09004 * 109.46835 * 330.03979 * 8 7 6 31 31 H 1.09007 * 109.47436 * 299.99721 * 11 9 8 32 32 H 1.08998 * 109.47671 * 60.00434 * 11 9 8 33 33 H 1.09002 * 109.47079 * 300.00273 * 12 11 9 34 34 H 1.09001 * 109.47203 * 59.99550 * 12 11 9 35 35 H 0.97003 * 119.99544 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7839 -0.3688 -2.4538 6 7 2.2999 -1.0887 -3.3557 7 6 3.0104 -2.0936 -2.9556 8 6 3.7110 -3.0858 -3.8478 9 16 5.3892 -2.4973 -4.2057 10 8 5.3186 -1.2793 -4.9341 11 6 6.0598 -3.8015 -5.2733 12 6 7.4951 -3.4489 -5.6691 13 6 8.0520 -4.5320 -6.5566 14 1 7.4433 -5.3867 -6.8123 15 6 9.3390 -4.4324 -7.0411 16 7 10.0803 -3.3918 -6.7292 17 14 10.0297 -5.7754 -8.1406 18 1 9.0026 -6.8295 -8.3390 19 1 10.4043 -5.1951 -9.4551 20 1 11.2310 -6.3695 -7.5012 21 16 3.0207 -2.1083 -1.2436 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 3.7641 -4.0518 -3.3456 30 1 3.1563 -3.1910 -4.7802 31 1 6.0542 -4.7499 -4.7358 32 1 5.4463 -3.8885 -6.1700 33 1 7.5012 -2.5005 -6.2064 34 1 8.1085 -3.3622 -4.7723 35 1 10.9859 -3.3220 -7.0699 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596039706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:37 Heat of formation + Delta-G solvation = -24.843123 kcal Electronic energy + Delta-G solvation = -17596.910020 eV Core-core repulsion = 14654.237555 eV Total energy + Delta-G solvation = -2942.672465 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.43008 -36.99519 -36.88921 -35.74504 -33.62251 -32.89775 -29.67459 -28.08253 -27.43663 -26.53937 -23.65086 -23.02348 -20.44814 -20.09751 -18.81622 -18.40165 -17.11945 -16.87198 -16.54553 -16.04023 -15.96613 -15.84900 -15.14938 -14.88796 -14.49374 -14.29936 -14.14516 -14.05737 -13.52910 -13.14988 -13.05759 -12.86086 -12.63757 -12.60605 -12.25300 -12.13432 -12.04184 -11.96427 -11.60847 -11.45415 -11.27409 -11.11319 -10.68977 -10.60892 -10.42762 -9.29932 -8.22115 -6.35130 -0.70325 -0.14882 0.26178 0.50496 1.40127 1.41305 1.51866 1.54135 1.67929 2.39957 2.70406 2.88695 3.10790 3.37353 3.77379 3.96500 4.09262 4.10182 4.26427 4.32654 4.45253 4.54469 4.63483 4.78268 4.89509 4.91776 5.00071 5.06555 5.31401 5.36711 5.42136 5.49137 5.76330 6.16047 6.80370 7.34631 7.51537 8.89294 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.051182 B = 0.002928 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.932166 B = 9559.107430 C = 9685.703764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.013 4.013 3 C -0.143 4.143 4 C -0.026 4.026 5 N -0.294 5.294 6 N -0.308 5.308 7 C -0.023 4.023 8 C -0.374 4.374 9 S 1.283 4.717 10 O -0.907 6.907 11 C -0.414 4.414 12 C 0.033 3.967 13 C -0.538 4.538 14 H 0.068 0.932 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.286 1.286 20 H -0.271 1.271 21 S 0.271 5.729 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.196 0.804 30 H 0.108 0.892 31 H 0.154 0.846 32 H 0.065 0.935 33 H -0.027 1.027 34 H 0.028 0.972 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 -0.893 22.115 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.202 4.202 4 C -0.306 4.306 5 N -0.131 5.131 6 N -0.147 5.147 7 C -0.302 4.302 8 C -0.512 4.512 9 S 1.483 4.517 10 O -0.903 6.903 11 C -0.553 4.553 12 C -0.005 4.005 13 C -0.577 4.577 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.182 1.182 19 H -0.212 1.212 20 H -0.196 1.196 21 S 0.517 5.483 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.146 0.854 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.213 0.787 30 H 0.126 0.874 31 H 0.172 0.828 32 H 0.084 0.916 33 H -0.009 1.009 34 H 0.046 0.954 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.041 0.214 22.123 27.327 hybrid contribution -0.600 -0.274 -3.405 3.468 sum -16.641 -0.060 18.718 25.046 Atomic orbital electron populations 1.21826 0.91993 1.02714 1.03257 1.20090 0.97530 0.96153 0.89775 1.21858 1.01284 0.93797 1.03265 1.30043 1.01097 0.99959 0.99492 1.71337 1.20369 1.23843 0.97549 1.71465 1.10347 1.04092 1.28795 1.28435 1.02661 0.99792 0.99276 1.26495 1.16820 1.04267 1.03666 1.69754 0.89545 0.81769 1.10592 1.93040 1.83080 1.37999 1.76145 1.27512 1.03553 1.14017 1.10180 1.18681 0.90169 0.95118 0.96524 1.21668 0.98739 1.06927 1.30396 0.91354 1.26053 0.97666 0.98369 0.98068 1.70110 1.09823 1.30942 1.46542 0.85347 0.78656 0.78841 0.77893 1.18235 1.21221 1.19639 1.83031 1.43327 1.22529 0.99442 0.93729 0.92156 0.88655 0.85393 0.88484 0.92572 0.93832 0.78686 0.87372 0.82838 0.91560 1.00879 0.95394 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.18 71.98 0.66 -0.97 16 2 C -0.01 -0.17 3.37 -11.54 -0.04 -0.21 16 3 C -0.14 -1.93 9.18 71.98 0.66 -1.27 16 4 C -0.03 -0.56 6.04 88.47 0.53 -0.02 16 5 N -0.29 -9.11 11.66 -50.85 -0.59 -9.71 16 6 N -0.31 -10.75 11.66 -50.85 -0.59 -11.34 16 7 C -0.02 -0.60 6.79 88.47 0.60 0.00 16 8 C -0.37 -8.62 6.52 71.24 0.46 -8.15 16 9 S 1.28 40.46 13.14 -56.49 -0.74 39.72 16 10 O -0.91 -43.73 18.14 -148.98 -2.70 -46.43 16 11 C -0.41 -15.17 5.86 71.98 0.42 -14.75 16 12 C 0.03 1.73 4.98 29.85 0.15 1.87 16 13 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 14 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 15 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 16 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 17 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 18 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 S 0.27 4.46 23.04 -56.49 -1.30 3.15 16 22 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.20 2.16 8.14 -2.39 -0.02 2.15 16 30 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.15 4.19 8.14 -2.39 -0.02 4.17 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 34 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -89.25 330.15 1.60 -87.65 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.08 Total: 0.84 kcal Atomic # 6 Polarization: -57.09 SS G_CDS: 4.15 Total: -52.94 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -0.90 Total: -77.65 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -2.70 Total: -46.43 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 44.91 SS G_CDS: -2.04 Total: 42.87 kcal Total: -89.25 1.60 -87.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596039706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.807 kcal (2) G-P(sol) polarization free energy of solvation -89.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds