Wall clock time and date at job start Tue Mar 31 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86794 * 120.00023 * 2 1 4 4 H 1.48500 * 109.46801 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47309 * 300.00441 * 3 2 1 6 6 H 1.48509 * 109.47191 * 60.00527 * 3 2 1 7 7 C 1.39916 * 119.99242 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99375 * 197.07164 * 7 2 1 9 9 C 1.41121 * 120.00641 * 17.07830 * 7 2 1 10 10 C 1.40885 * 120.16519 * 205.77399 * 9 7 2 11 11 C 1.36356 * 119.83387 * 180.20833 * 10 9 7 12 12 C 1.39515 * 120.16406 * 359.51593 * 11 10 9 13 13 N 1.39113 * 119.83574 * 180.23387 * 12 11 10 14 14 C 1.34779 * 119.99484 * 35.92343 * 13 12 11 15 15 O 1.21503 * 120.00343 * 355.49738 * 14 13 12 16 16 C 1.48278 * 119.99495 * 175.50453 * 14 13 12 17 17 C 1.42292 * 126.93911 * 179.71026 * 16 14 13 18 18 C 1.35307 * 103.92181 * 179.91006 * 17 16 14 19 19 C 1.50701 * 126.66119 * 180.12934 * 18 17 16 20 20 O 1.42901 * 109.46900 * 90.28370 * 19 18 17 21 21 O 1.34020 * 106.67173 * 0.34083 * 18 17 16 22 22 N 1.20901 * 111.85295 * 359.77199 * 21 18 17 23 23 C 1.39518 * 120.32861 * 0.25524 * 12 11 10 24 24 C 1.36358 * 120.16546 * 359.97438 * 23 12 11 25 25 H 0.97008 * 119.99750 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.08080 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.91302 * 179.79812 * 11 10 9 28 28 H 0.96994 * 120.00454 * 215.91599 * 13 12 11 29 29 H 1.08002 * 128.03679 * 0.02562 * 17 16 14 30 30 H 1.08999 * 109.46596 * 210.27999 * 19 18 17 31 31 H 1.08999 * 109.47078 * 330.28013 * 19 18 17 32 32 H 0.96702 * 113.99610 * 179.97438 * 20 19 18 33 33 H 1.07998 * 119.91669 * 179.97438 * 23 12 11 34 34 H 1.07996 * 120.08376 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3462 -0.0006 5 1 1.8839 2.3964 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0081 -1.2118 -0.0005 8 1 3.0524 -1.2325 0.2740 9 6 1.3492 -2.4068 -0.3600 10 6 1.8128 -3.6449 0.1268 11 6 1.1736 -4.7958 -0.2282 12 6 0.0569 -4.7486 -1.0632 13 7 -0.5930 -5.9265 -1.4171 14 6 -0.6958 -6.9331 -0.5267 15 8 -0.1509 -6.8448 0.5557 16 6 -1.4736 -8.1484 -0.8683 17 6 -1.6732 -9.2943 -0.0487 18 6 -2.4440 -10.1071 -0.8077 19 6 -2.9628 -11.4695 -0.4259 20 8 -4.2371 -11.3339 0.2065 21 8 -2.6526 -9.4672 -1.9666 22 7 -2.1112 -8.3864 -1.9877 23 6 -0.4110 -3.5258 -1.5453 24 6 0.2208 -2.3671 -1.2026 25 1 -0.4850 0.8401 0.0004 26 1 2.6743 -3.6826 0.7772 27 1 1.5299 -5.7459 0.1416 28 1 -0.9723 -6.0234 -2.3046 29 1 -1.2982 -9.4729 0.9482 30 1 -3.0649 -12.0832 -1.3209 31 1 -2.2641 -11.9445 0.2627 32 1 -4.6320 -12.1733 0.4794 33 1 -1.2758 -3.4970 -2.1916 34 1 -0.1428 -1.4213 -1.5762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610488313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:49 Heat of formation + Delta-G solvation = 5.549967 kcal Electronic energy + Delta-G solvation = -21116.077471 eV Core-core repulsion = 17596.526127 eV Total energy + Delta-G solvation = -3519.551344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.20668 -39.63792 -37.45540 -37.29223 -34.57640 -34.09382 -33.09426 -32.43212 -29.61527 -29.01997 -27.01110 -25.80413 -24.00926 -22.73401 -21.52478 -20.70028 -19.48429 -18.40534 -17.93657 -17.43778 -17.38101 -16.74701 -16.28874 -15.30178 -15.20980 -14.78047 -14.59954 -14.03236 -13.87734 -13.67740 -13.09152 -12.72415 -12.47630 -12.14929 -11.89861 -11.78211 -11.39185 -11.15959 -11.08418 -10.79263 -10.65759 -10.48590 -10.18520 -9.84691 -9.64829 -9.54522 -9.20720 -8.97777 -7.58000 -7.05383 -6.78836 -4.34441 0.97732 1.49835 2.61655 2.67018 3.04707 3.06854 3.09322 3.12196 3.28728 3.57209 3.88679 3.90398 4.10306 4.43321 4.58572 4.61177 4.81355 4.90864 5.23991 5.30511 5.65504 5.71382 6.18172 6.40126 6.69836 6.88179 7.00074 7.05216 7.12733 7.23626 7.55940 7.63138 7.77865 7.90044 7.99845 8.20922 8.23829 8.52430 8.61971 8.83999 8.94408 10.13303 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.050748 B = 0.002793 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.613129 B =10023.702593 C =10162.428844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.108 3.892 10 C -0.217 4.217 11 C -0.072 4.072 12 C -0.019 4.019 13 N -0.627 5.627 14 C 0.577 3.423 15 O -0.514 6.514 16 C -0.016 4.016 17 C -0.155 4.155 18 C -0.049 4.049 19 C 0.163 3.837 20 O -0.565 6.565 21 O 0.127 5.873 22 N -0.328 5.328 23 C -0.106 4.106 24 C -0.154 4.154 25 H 0.281 0.719 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.401 0.599 29 H 0.183 0.817 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.390 0.610 33 H 0.092 0.908 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -18.467 -2.713 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.106 3.894 10 C -0.238 4.238 11 C -0.092 4.092 12 C -0.111 4.111 13 N -0.269 5.269 14 C 0.361 3.639 15 O -0.389 6.389 16 C -0.176 4.176 17 C -0.177 4.177 18 C -0.112 4.112 19 C 0.084 3.916 20 O -0.372 6.372 21 O 0.050 5.950 22 N -0.028 5.028 23 C -0.126 4.126 24 C -0.174 4.174 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.235 0.765 29 H 0.200 0.800 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.239 0.761 33 H 0.110 0.890 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.654 -16.852 -3.134 18.049 hybrid contribution 0.088 -0.092 0.471 0.488 sum -5.567 -16.943 -2.663 18.032 Atomic orbital electron populations 1.69855 1.07621 1.29281 1.34691 1.25965 0.94770 1.01484 0.92256 0.86233 0.80995 0.80767 0.78589 1.18325 1.19666 1.19942 1.19617 0.97971 0.91133 1.39632 0.90172 1.17700 0.91158 0.92228 0.88353 1.20667 1.04092 0.92558 1.06436 1.20366 0.93464 0.97990 0.97377 1.17149 0.98769 0.83504 1.11674 1.42762 1.54907 1.14278 1.14987 1.16874 0.80988 0.81410 0.84637 1.90788 1.46307 1.79061 1.22713 1.23762 1.02856 0.99039 0.91918 1.22512 1.01249 0.91672 1.02239 1.23974 1.01764 0.98306 0.87181 1.20231 0.86087 0.87539 0.97698 1.86567 1.33649 1.36400 1.80562 1.84766 1.54388 1.21579 1.34253 1.74183 1.09197 0.98053 1.21415 1.20242 0.99026 0.91628 1.01741 1.20892 0.99339 0.96313 1.00866 0.90792 0.88505 0.87562 0.76460 0.79986 0.90746 0.89613 0.76055 0.89027 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.38 10.97 55.55 0.61 -19.77 16 2 C 0.07 1.84 5.14 -17.33 -0.09 1.75 16 3 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.45 -12.05 9.04 -37.86 -0.34 -12.39 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 9 C 0.11 2.92 5.57 -106.80 -0.59 2.33 16 10 C -0.22 -5.57 9.74 -39.26 -0.38 -5.95 16 11 C -0.07 -1.77 8.61 -39.78 -0.34 -2.11 16 12 C -0.02 -0.44 6.29 -83.60 -0.53 -0.97 16 13 N -0.63 -12.39 5.29 -10.47 -0.06 -12.44 16 14 C 0.58 11.33 7.67 -12.13 -0.09 11.24 16 15 O -0.51 -11.57 14.40 5.36 0.08 -11.50 16 16 C -0.02 -0.26 7.19 -82.53 -0.59 -0.86 16 17 C -0.15 -1.99 10.92 -39.07 -0.43 -2.41 16 18 C -0.05 -0.52 7.10 -35.35 -0.25 -0.77 16 19 C 0.16 0.96 7.60 36.01 0.27 1.23 16 20 O -0.56 -3.95 13.64 -35.23 -0.48 -4.43 16 21 O 0.13 1.61 11.18 17.23 0.19 1.80 16 22 N -0.33 -4.90 11.84 33.29 0.39 -4.51 16 23 C -0.11 -2.51 9.90 -39.78 -0.39 -2.91 16 24 C -0.15 -4.01 8.63 -39.26 -0.34 -4.35 16 25 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 26 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 27 H 0.11 2.55 6.26 -52.49 -0.33 2.22 16 28 H 0.40 6.84 8.58 -40.82 -0.35 6.49 16 29 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.39 0.53 9.12 45.56 0.42 0.94 16 33 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.12 3.22 6.20 -52.49 -0.33 2.90 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -32.71 308.46 -6.00 -38.70 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -2.25 Total: 10.17 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -4.10 Total: -16.18 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.95 Total: -36.72 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.21 Total: -14.13 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.71 -6.00 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610488313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.252 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds