Wall clock time and date at job start Tue Mar 31 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 120.00672 * 2 1 4 4 H 1.48504 * 109.47049 * 270.00248 * 3 2 1 5 5 H 1.48497 * 109.46950 * 29.99675 * 3 2 1 6 6 H 1.48492 * 109.47685 * 149.99959 * 3 2 1 7 7 C 1.39941 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99989 * 197.88539 * 7 2 1 9 9 C 1.41403 * 119.99704 * 17.89205 * 7 2 1 10 10 C 1.40782 * 120.21354 * 24.46101 * 9 7 2 11 11 C 1.37643 * 119.89818 * 179.97438 * 10 9 7 12 12 C 1.38515 * 120.32620 * 0.27831 * 11 10 9 13 13 C 1.39297 * 120.42287 * 359.44690 * 12 11 10 14 14 N 1.39686 * 119.95506 * 180.29973 * 13 12 11 15 15 C 1.46500 * 119.99823 * 0.25078 * 14 13 12 16 16 C 1.50694 * 109.47015 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.60223 * 94.99731 * 16 15 14 18 18 C 1.38606 * 119.17734 * 179.97438 * 17 16 15 19 19 C 1.38780 * 118.40780 * 0.02562 * 18 17 16 20 20 Cl 1.73605 * 120.43309 * 179.97438 * 19 18 17 21 21 C 1.38306 * 119.13934 * 359.97438 * 19 18 17 22 22 N 1.31854 * 119.60790 * 274.73023 * 16 15 14 23 23 C 1.38316 * 120.09441 * 0.54837 * 13 12 11 24 24 H 0.97003 * 119.99228 * 359.97438 * 1 2 3 25 25 H 1.08010 * 120.04932 * 359.96006 * 10 9 7 26 26 H 1.08006 * 119.83550 * 179.97438 * 11 10 9 27 27 H 1.08004 * 119.79221 * 179.70002 * 12 11 10 28 28 H 0.97003 * 119.99933 * 180.24512 * 14 13 12 29 29 H 1.08994 * 109.46895 * 299.99714 * 15 14 13 30 30 H 1.09000 * 109.47207 * 59.99717 * 15 14 13 31 31 H 1.07999 * 120.41348 * 359.97438 * 17 16 15 32 32 H 1.08002 * 120.79893 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.62998 * 180.02562 * 21 19 18 34 34 H 1.08001 * 120.16256 * 179.70794 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4400 2.6526 0.7000 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0487 -1.2345 0.2878 9 6 1.3521 -2.4070 -0.3752 10 6 0.2217 -2.3615 -1.2132 11 6 -0.4114 -3.5288 -1.5752 12 6 0.0546 -4.7492 -1.1145 13 6 1.1752 -4.8103 -0.2893 14 7 1.6404 -6.0467 0.1646 15 6 0.9532 -7.2784 -0.2316 16 6 1.6491 -8.4632 0.3870 17 6 1.1869 -8.9784 1.5836 18 6 1.8333 -10.0687 2.1445 19 6 2.9269 -10.6028 1.4775 20 17 3.7759 -11.9679 2.1329 21 6 3.3316 -10.0334 0.2838 22 7 2.6883 -8.9994 -0.2222 23 6 1.8249 -3.6482 0.0854 24 1 -0.4849 0.8401 0.0004 25 1 -0.1482 -1.4120 -1.5712 26 1 -1.2787 -3.4927 -2.2179 27 1 -0.4517 -5.6594 -1.4001 28 1 2.4186 -6.0898 0.7421 29 1 -0.0808 -7.2439 0.1115 30 1 0.9727 -7.3721 -1.3174 31 1 0.3327 -8.5369 2.0754 32 1 1.4941 -10.4925 3.0782 33 1 4.1814 -10.4430 -0.2421 34 1 2.6910 -3.6940 0.7289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703856130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:14 Heat of formation + Delta-G solvation = 31.392638 kcal Electronic energy + Delta-G solvation = -18632.986994 eV Core-core repulsion = 15555.265436 eV Total energy + Delta-G solvation = -3077.721557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44426 -39.57970 -37.77723 -36.75809 -35.02637 -33.58187 -32.69456 -31.65972 -29.61898 -27.15162 -26.72021 -24.82179 -23.43248 -22.52159 -21.84316 -19.20218 -18.25755 -17.83663 -17.41858 -17.23337 -16.38994 -16.22693 -16.04350 -15.23310 -14.90750 -14.75946 -14.53833 -14.32820 -14.04809 -13.91724 -13.39821 -13.08796 -13.02757 -12.85801 -12.74745 -12.46407 -12.24803 -12.08245 -11.68077 -11.19521 -11.06527 -10.95049 -10.64579 -10.48471 -9.99507 -9.32512 -8.59924 -7.96503 -6.31356 -0.28411 0.08454 0.92754 1.06089 1.35389 1.40081 1.52790 1.60603 2.23460 2.35661 2.81374 2.96692 3.16333 3.55853 3.68263 3.84033 3.87952 4.08621 4.50613 4.52406 4.61104 4.64369 4.74518 4.82017 4.96560 5.15050 5.17953 5.22920 5.37985 5.42172 5.57712 5.92980 6.03165 6.21462 6.31628 6.61930 6.76136 6.89148 6.97128 7.03784 7.22397 8.38359 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033706 B = 0.002719 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.522785 B =10296.805233 C =10765.663291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.112 3.888 10 C -0.232 4.232 11 C -0.074 4.074 12 C -0.301 4.301 13 C 0.236 3.764 14 N -0.747 5.747 15 C 0.187 3.813 16 C 0.106 3.894 17 C -0.137 4.137 18 C -0.062 4.062 19 C -0.089 4.089 20 Cl -0.045 7.045 21 C 0.106 3.894 22 N -0.482 5.482 23 C -0.311 4.311 24 H 0.287 0.713 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.392 0.608 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -19.290 4.396 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.088 0.912 9 C 0.109 3.891 10 C -0.252 4.252 11 C -0.093 4.093 12 C -0.324 4.324 13 C 0.135 3.865 14 N -0.379 5.379 15 C 0.062 3.938 16 C -0.031 4.031 17 C -0.157 4.157 18 C -0.088 4.088 19 C -0.118 4.118 20 Cl -0.017 7.017 21 C -0.053 4.053 22 N -0.192 5.192 23 C -0.335 4.335 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.226 0.774 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.184 0.816 32 H 0.192 0.808 33 H 0.197 0.803 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.495 -19.048 3.587 19.542 hybrid contribution 0.440 0.368 0.983 1.138 sum 2.935 -18.680 4.569 19.454 Atomic orbital electron populations 1.69915 1.08954 1.30358 1.35586 1.26745 0.95496 1.04399 0.91221 0.85223 0.79040 0.76027 0.79484 1.18727 1.19076 1.18398 1.19794 0.98186 0.92684 1.42613 0.91160 1.17692 0.91095 0.92338 0.87927 1.21128 1.01772 0.97025 1.05296 1.20740 0.98002 0.92574 0.97988 1.20175 1.02890 0.97224 1.12080 1.17468 0.92381 0.84513 0.92127 1.44298 1.34596 1.01874 1.57157 1.19991 0.95120 0.79719 0.98975 1.21368 0.92665 0.96063 0.92984 1.22283 1.01972 0.96274 0.95186 1.21888 0.92318 0.94188 1.00428 1.22231 0.97796 0.94292 0.97507 1.98393 1.76364 1.41601 1.85302 1.23100 0.98867 0.91239 0.92086 1.67640 1.07590 1.09811 1.34145 1.20493 1.07296 0.92077 1.13633 0.90243 0.88538 0.87175 0.86549 0.77410 0.89683 0.91908 0.81591 0.80829 0.80272 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.29 10.96 21.83 0.24 -44.05 16 2 C 0.04 1.90 5.14 85.25 0.44 2.34 16 3 Si 0.98 39.40 29.60 68.60 2.03 41.43 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.34 9.05 23.46 0.21 -28.13 16 8 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 9 C 0.11 6.35 5.57 -21.31 -0.12 6.24 16 10 C -0.23 -12.70 8.70 22.75 0.20 -12.51 16 11 C -0.07 -3.54 10.01 22.20 0.22 -3.32 16 12 C -0.30 -13.17 9.32 22.59 0.21 -12.96 16 13 C 0.24 10.48 6.64 38.16 0.25 10.73 16 14 N -0.75 -26.04 5.72 -343.31 -1.96 -28.00 16 15 C 0.19 5.16 5.21 85.63 0.45 5.61 16 16 C 0.11 2.52 6.15 42.55 0.26 2.78 16 17 C -0.14 -2.44 9.72 22.36 0.22 -2.22 16 18 C -0.06 -0.93 9.98 22.49 0.22 -0.71 16 19 C -0.09 -1.50 6.34 22.42 0.14 -1.36 16 20 Cl -0.05 -0.65 28.99 -2.72 -0.08 -0.73 16 21 C 0.11 2.09 10.99 84.70 0.93 3.02 16 22 N -0.48 -12.15 10.27 -183.79 -1.89 -14.04 16 23 C -0.31 -15.93 9.63 22.86 0.22 -15.71 16 24 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 25 H 0.10 5.53 6.15 -2.91 -0.02 5.51 16 26 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.12 4.33 6.70 -2.91 -0.02 4.31 16 28 H 0.39 13.17 8.47 -92.71 -0.79 12.39 16 29 H 0.09 2.11 7.83 -2.39 -0.02 2.09 16 30 H 0.06 1.86 7.95 -2.39 -0.02 1.84 16 31 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -63.90 312.92 2.55 -61.36 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.35 Total: 30.23 kcal Atomic # 6 Polarization: -50.05 SS G_CDS: 3.86 Total: -46.19 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -3.61 Total: -86.09 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -63.90 2.55 -61.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703856130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.750 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds