Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86806 * 120.00149 * 2 1 4 4 H 1.48500 * 109.47222 * 240.00580 * 3 2 1 5 5 H 1.48498 * 109.46787 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47113 * 120.00562 * 3 2 1 7 7 C 1.38752 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00325 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.34311 * 116.99871 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00331 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99850 * 179.97438 * 10 9 7 13 13 C 1.53005 * 109.47125 * 186.27701 * 12 10 9 14 14 H 1.08998 * 109.47154 * 306.02753 * 13 12 10 15 15 C 1.50698 * 109.46551 * 66.02626 * 13 12 10 16 16 C 1.38234 * 120.00309 * 59.72577 * 15 13 12 17 17 C 1.38233 * 120.00025 * 179.78607 * 16 15 13 18 18 C 1.38233 * 120.00190 * 0.43700 * 17 16 15 19 19 C 1.38233 * 120.00058 * 359.82062 * 18 17 16 20 20 C 1.38236 * 120.00107 * 239.99493 * 15 13 12 21 21 C 1.52998 * 109.47019 * 186.02205 * 13 12 10 22 22 F 1.39899 * 109.47220 * 305.20218 * 21 13 12 23 23 F 1.39904 * 109.46998 * 65.20427 * 21 13 12 24 24 F 1.39902 * 109.46938 * 185.20023 * 21 13 12 25 25 H 0.97000 * 120.00056 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46909 * 66.28463 * 12 10 9 27 27 H 1.08992 * 109.47570 * 306.28287 * 12 10 9 28 28 H 1.08006 * 119.99943 * 359.97438 * 16 15 13 29 29 H 1.08004 * 119.99946 * 180.27939 * 17 16 15 30 30 H 1.07999 * 119.99990 * 179.83056 * 18 17 16 31 31 H 1.07993 * 120.00444 * 179.97438 * 19 18 17 32 32 H 1.08007 * 119.99721 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 3.1021 1.6965 -1.2126 5 1 1.2834 2.7464 0.0006 6 1 3.1023 1.6963 1.2124 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2755 -3.4331 -0.0020 12 6 1.3809 -4.8392 -0.0011 13 6 2.4271 -5.9447 0.1552 14 1 3.1927 -5.8315 -0.6123 15 6 3.0630 -5.8452 1.5178 16 6 2.2834 -5.9537 2.6541 17 6 2.8674 -5.8669 3.9040 18 6 4.2299 -5.6625 4.0176 19 6 5.0088 -5.5487 2.8813 20 6 4.4253 -5.6399 1.6314 21 6 1.7528 -7.3099 0.0056 22 9 0.6923 -7.4082 0.9128 23 9 1.2653 -7.4488 -1.2985 24 9 2.6841 -8.3210 0.2654 25 1 -0.4850 0.8400 0.0004 26 1 0.8466 -4.9751 -0.9414 27 1 0.6750 -4.8871 0.8280 28 1 1.2183 -6.1094 2.5654 29 1 2.2589 -5.9562 4.7918 30 1 4.6857 -5.5920 4.9941 31 1 6.0731 -5.3886 2.9700 32 1 5.0340 -5.5512 0.7436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728656453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = -213.057606 kcal Electronic energy + Delta-G solvation = -23209.203564 eV Core-core repulsion = 19106.023192 eV Total energy + Delta-G solvation = -4103.180372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.07703 -47.55405 -47.52861 -39.62616 -38.65573 -35.66724 -34.13836 -32.16932 -30.73735 -29.71037 -27.31515 -25.10682 -23.35139 -22.44759 -21.28238 -19.83397 -18.45768 -18.33129 -17.80690 -17.46450 -16.68910 -16.04120 -15.47292 -14.85692 -14.69162 -14.42140 -14.39025 -14.28191 -14.25394 -13.95176 -13.74404 -13.66260 -13.20633 -13.09398 -12.84260 -12.52545 -12.02878 -11.87588 -11.64095 -11.47327 -11.14339 -10.85530 -10.75653 -10.48222 -10.38328 -9.84330 -9.11904 -8.70227 -8.62170 -8.55978 -6.42991 -4.11048 1.42439 1.62526 2.77865 3.10734 3.17149 3.21089 3.48155 3.67127 3.82194 4.03167 4.07354 4.17715 4.68942 4.78109 4.88253 5.06791 5.11170 5.16525 5.27223 5.39258 5.62252 5.73910 5.78495 5.94614 6.11543 6.21981 6.59908 6.67251 6.69460 6.73458 7.15649 7.36833 7.92571 8.66492 9.05573 9.81216 10.74877 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.005459 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.275277 B = 5127.838173 C = 6012.057502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.382 4.382 8 H 0.096 0.904 9 O -0.212 6.212 10 C 0.404 3.596 11 O -0.548 6.548 12 C -0.103 4.103 13 C -0.076 4.076 14 H 0.131 0.869 15 C -0.083 4.083 16 C -0.110 4.110 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.125 4.125 20 C -0.069 4.069 21 C 0.459 3.541 22 F -0.180 7.180 23 F -0.182 7.182 24 F -0.180 7.180 25 H 0.270 0.730 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -13.317 3.781 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.113 0.887 9 O -0.119 6.119 10 C 0.250 3.750 11 O -0.445 6.445 12 C -0.141 4.141 13 C -0.095 4.095 14 H 0.149 0.851 15 C -0.083 4.083 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.133 4.133 19 C -0.143 4.143 20 C -0.087 4.087 21 C 0.405 3.595 22 F -0.161 7.161 23 F -0.163 7.163 24 F -0.161 7.161 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.238 -13.156 3.774 14.328 hybrid contribution 0.220 0.668 -0.059 0.706 sum 4.458 -12.488 3.715 13.771 Atomic orbital electron populations 1.69980 1.05992 1.27822 1.46380 1.25327 0.95803 0.98843 0.96179 0.85753 0.78651 0.79497 0.79332 1.19476 1.20350 1.19505 1.21161 0.92322 0.79721 1.52567 0.88681 1.83860 1.39269 1.13293 1.75452 1.22546 0.86590 0.86788 0.79101 1.90557 1.15285 1.87914 1.50730 1.21113 0.97195 0.89918 1.05918 1.21180 0.99458 0.89080 0.99774 0.85143 1.19166 0.94292 1.02722 0.92160 1.21185 1.00070 0.99312 0.92238 1.21033 0.95054 1.00940 0.97120 1.21145 0.94117 0.99620 0.98421 1.21088 0.99883 1.00901 0.92453 1.20952 0.93724 0.96163 0.97847 1.20471 0.77064 0.88391 0.73537 1.93143 1.58705 1.96751 1.67527 1.93187 1.88696 1.96521 1.37891 1.93180 1.65580 1.63504 1.93830 0.91996 0.87587 0.87770 0.85462 0.86049 0.86288 0.86070 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.19 5.49 -17.53 -0.10 1.10 16 3 Si 0.94 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.38 -11.13 9.65 30.92 0.30 -10.83 16 8 H 0.10 2.78 6.86 -52.49 -0.36 2.42 16 9 O -0.21 -5.95 9.75 -20.71 -0.20 -6.15 16 10 C 0.40 9.48 7.59 36.01 0.27 9.75 16 11 O -0.55 -13.55 13.74 -19.05 -0.26 -13.81 16 12 C -0.10 -1.80 4.89 -27.88 -0.14 -1.93 16 13 C -0.08 -1.15 1.73 -91.77 -0.16 -1.31 16 14 H 0.13 1.95 7.56 -51.93 -0.39 1.55 16 15 C -0.08 -1.32 3.48 -104.63 -0.36 -1.69 16 16 C -0.11 -1.66 8.42 -39.58 -0.33 -1.99 16 17 C -0.12 -1.69 10.05 -39.59 -0.40 -2.09 16 18 C -0.11 -1.51 10.05 -39.59 -0.40 -1.91 16 19 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 20 C -0.07 -1.07 8.84 -39.58 -0.35 -1.42 16 21 C 0.46 6.30 2.66 37.16 0.10 6.40 16 22 F -0.18 -2.45 14.43 2.25 0.03 -2.41 16 23 F -0.18 -2.48 16.91 2.25 0.04 -2.44 16 24 F -0.18 -2.47 16.89 2.25 0.04 -2.43 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.11 1.65 7.80 -51.93 -0.40 1.24 16 27 H 0.10 1.70 6.91 -51.93 -0.36 1.34 16 28 H 0.13 1.77 5.95 -52.48 -0.31 1.46 16 29 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.85 7.95 -52.48 -0.42 1.44 16 LS Contribution 294.65 15.07 4.44 4.44 Total: -1.00 -31.95 294.65 -4.79 -36.74 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.65 Total: 2.41 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.96 Total: -8.06 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.76 Total: -24.45 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.46 Total: -19.96 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.11 Total: -7.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.95 -4.79 -36.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728656453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.319 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds