Wall clock time and date at job start Tue Mar 31 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86806 * 120.00149 * 2 1 4 4 H 1.48500 * 109.47222 * 240.00580 * 3 2 1 5 5 H 1.48498 * 109.46787 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47113 * 120.00562 * 3 2 1 7 7 C 1.38752 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00325 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.34311 * 116.99871 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00331 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99850 * 179.97438 * 10 9 7 13 13 C 1.53005 * 109.47125 * 186.27701 * 12 10 9 14 14 H 1.08998 * 109.47154 * 306.02753 * 13 12 10 15 15 C 1.50698 * 109.46551 * 66.02626 * 13 12 10 16 16 C 1.38234 * 120.00309 * 59.72577 * 15 13 12 17 17 C 1.38233 * 120.00025 * 179.78607 * 16 15 13 18 18 C 1.38233 * 120.00190 * 0.43700 * 17 16 15 19 19 C 1.38233 * 120.00058 * 359.82062 * 18 17 16 20 20 C 1.38236 * 120.00107 * 239.99493 * 15 13 12 21 21 C 1.52998 * 109.47019 * 186.02205 * 13 12 10 22 22 F 1.39899 * 109.47220 * 305.20218 * 21 13 12 23 23 F 1.39904 * 109.46998 * 65.20427 * 21 13 12 24 24 F 1.39902 * 109.46938 * 185.20023 * 21 13 12 25 25 H 0.97000 * 120.00056 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46909 * 66.28463 * 12 10 9 27 27 H 1.08992 * 109.47570 * 306.28287 * 12 10 9 28 28 H 1.08006 * 119.99943 * 359.97438 * 16 15 13 29 29 H 1.08004 * 119.99946 * 180.27939 * 17 16 15 30 30 H 1.07999 * 119.99990 * 179.83056 * 18 17 16 31 31 H 1.07993 * 120.00444 * 179.97438 * 19 18 17 32 32 H 1.08007 * 119.99721 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 3.1021 1.6965 -1.2126 5 1 1.2834 2.7464 0.0006 6 1 3.1023 1.6963 1.2124 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2755 -3.4331 -0.0020 12 6 1.3809 -4.8392 -0.0011 13 6 2.4271 -5.9447 0.1552 14 1 3.1927 -5.8315 -0.6123 15 6 3.0630 -5.8452 1.5178 16 6 2.2834 -5.9537 2.6541 17 6 2.8674 -5.8669 3.9040 18 6 4.2299 -5.6625 4.0176 19 6 5.0088 -5.5487 2.8813 20 6 4.4253 -5.6399 1.6314 21 6 1.7528 -7.3099 0.0056 22 9 0.6923 -7.4082 0.9128 23 9 1.2653 -7.4488 -1.2985 24 9 2.6841 -8.3210 0.2654 25 1 -0.4850 0.8400 0.0004 26 1 0.8466 -4.9751 -0.9414 27 1 0.6750 -4.8871 0.8280 28 1 1.2183 -6.1094 2.5654 29 1 2.2589 -5.9562 4.7918 30 1 4.6857 -5.5920 4.9941 31 1 6.0731 -5.3886 2.9700 32 1 5.0340 -5.5512 0.7436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728656453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:38 Heat of formation + Delta-G solvation = -230.276585 kcal Electronic energy + Delta-G solvation = -23209.950235 eV Core-core repulsion = 19106.023192 eV Total energy + Delta-G solvation = -4103.927043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.19640 -48.66448 -48.64432 -41.24799 -40.10562 -37.47482 -35.61055 -34.28554 -31.82743 -30.96347 -28.76180 -27.06143 -24.54411 -23.56460 -22.69626 -21.37471 -19.87998 -19.59593 -19.52732 -18.80310 -18.05970 -17.55374 -16.93285 -16.44801 -16.25461 -16.08853 -15.76649 -15.52942 -15.37427 -15.06133 -14.86012 -14.78500 -14.50681 -14.40186 -14.13338 -14.02813 -13.61838 -13.34399 -13.15485 -12.92148 -12.72280 -12.30336 -12.17542 -12.01273 -11.96141 -11.83613 -11.03414 -10.68729 -9.80944 -9.71782 -8.52685 -6.31953 0.31329 0.51521 1.32240 1.33708 1.48950 1.60078 1.66117 2.10203 2.48751 2.67984 2.88163 2.99064 3.03965 3.10940 3.61869 3.63616 3.89116 4.13818 4.18774 4.26713 4.38095 4.50627 4.62844 4.74394 4.78358 5.03694 5.13942 5.18920 5.52014 5.59367 5.60604 5.84220 6.08968 6.67463 6.92838 7.77560 8.67923 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.005459 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.275277 B = 5127.838173 C = 6012.057502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.004 4.004 3 Si 1.014 2.986 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.416 4.416 8 H 0.084 0.916 9 O -0.246 6.246 10 C 0.405 3.595 11 O -0.561 6.561 12 C -0.095 4.095 13 C -0.071 4.071 14 H 0.130 0.870 15 C -0.103 4.103 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.117 4.117 19 C -0.133 4.133 20 C -0.093 4.093 21 C 0.472 3.528 22 F -0.177 7.177 23 F -0.179 7.179 24 F -0.177 7.177 25 H 0.278 0.722 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.599 -13.381 4.594 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.204 4.204 3 Si 0.833 3.167 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.101 0.899 9 O -0.155 6.155 10 C 0.252 3.748 11 O -0.458 6.458 12 C -0.132 4.132 13 C -0.090 4.090 14 H 0.148 0.852 15 C -0.104 4.104 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.135 4.135 19 C -0.151 4.151 20 C -0.111 4.111 21 C 0.418 3.582 22 F -0.158 7.158 23 F -0.160 7.160 24 F -0.159 7.159 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.135 0.865 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.697 -13.254 4.585 14.791 hybrid contribution 0.124 0.559 -0.277 0.636 sum 4.821 -12.695 4.308 14.247 Atomic orbital electron populations 1.70068 1.07620 1.29340 1.47134 1.26485 0.96827 1.02276 0.94856 0.84735 0.77628 0.74608 0.79738 1.18571 1.18557 1.18726 1.21351 0.92141 0.81026 1.54705 0.89854 1.83882 1.40357 1.14191 1.77030 1.23647 0.86714 0.87650 0.76755 1.90534 1.16264 1.88358 1.50605 1.21179 0.97660 0.86882 1.07528 1.21090 0.98849 0.89159 0.99940 0.85239 1.19318 0.94698 1.03797 0.92544 1.21409 1.00528 0.99896 0.92708 1.21431 0.95780 0.99992 0.97540 1.21551 0.94026 0.98323 0.99554 1.21435 1.01239 1.00267 0.92164 1.21139 0.93966 0.97338 0.98688 1.20087 0.76918 0.87591 0.73622 1.93151 1.58497 1.96694 1.67463 1.93197 1.88629 1.96464 1.37746 1.93185 1.65627 1.63228 1.93837 0.91285 0.85517 0.86524 0.84823 0.83561 0.83266 0.83970 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.18 13.67 21.62 0.30 -52.88 16 2 C 0.00 -0.24 5.49 84.87 0.47 0.22 16 3 Si 1.01 43.10 29.55 68.60 2.03 45.12 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.42 -24.83 9.65 67.94 0.66 -24.18 16 8 H 0.08 5.00 6.86 -2.91 -0.02 4.98 16 9 O -0.25 -14.15 9.75 14.83 0.14 -14.00 16 10 C 0.41 19.27 7.59 71.24 0.54 19.81 16 11 O -0.56 -28.19 13.74 20.78 0.29 -27.91 16 12 C -0.09 -3.25 4.89 29.85 0.15 -3.10 16 13 C -0.07 -2.11 1.73 -11.54 -0.02 -2.13 16 14 H 0.13 3.85 7.56 -2.39 -0.02 3.83 16 15 C -0.10 -3.23 3.48 -19.87 -0.07 -3.30 16 16 C -0.13 -3.70 8.42 22.27 0.19 -3.51 16 17 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 18 C -0.12 -2.82 10.05 22.27 0.22 -2.60 16 19 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 20 C -0.09 -2.88 8.84 22.27 0.20 -2.68 16 21 C 0.47 12.34 2.66 71.98 0.19 12.53 16 22 F -0.18 -4.53 14.43 44.97 0.65 -3.88 16 23 F -0.18 -4.61 16.91 44.97 0.76 -3.85 16 24 F -0.18 -4.67 16.89 44.97 0.76 -3.91 16 25 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.13 3.81 7.80 -2.39 -0.02 3.79 16 27 H 0.12 3.72 6.91 -2.39 -0.02 3.71 16 28 H 0.13 3.56 5.95 -2.91 -0.02 3.55 16 29 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.12 3.67 7.95 -2.91 -0.02 3.65 16 Total: -1.00 -69.22 294.65 9.05 -60.16 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.17 Total: 16.48 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 2.97 Total: -15.34 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.30 Total: -52.88 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: 0.43 Total: -41.91 kcal Atomic # 9 Polarization: -13.81 SS G_CDS: 2.17 Total: -11.64 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -69.22 9.05 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728656453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.112 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds