Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86801 * 119.99943 * 2 1 4 4 H 1.48498 * 109.47175 * 239.99925 * 3 2 1 5 5 H 1.48495 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46643 * 120.00464 * 3 2 1 7 7 C 1.38751 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99790 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.34319 * 116.99832 * 179.97438 * 9 7 2 11 11 O 1.21210 * 119.99581 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99816 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.46800 * 183.33609 * 12 10 9 14 14 H 1.09004 * 109.46830 * 53.79053 * 13 12 10 15 15 C 1.50699 * 109.47506 * 293.78701 * 13 12 10 16 16 C 1.38235 * 120.00023 * 299.72909 * 15 13 12 17 17 C 1.38237 * 119.99683 * 179.80572 * 16 15 13 18 18 C 1.38238 * 119.99955 * 0.39856 * 17 16 15 19 19 C 1.38232 * 120.00070 * 359.85416 * 18 17 16 20 20 C 1.38233 * 119.99851 * 119.99750 * 15 13 12 21 21 C 1.53002 * 109.46899 * 173.78531 * 13 12 10 22 22 F 1.39895 * 109.46887 * 174.11759 * 21 13 12 23 23 F 1.39899 * 109.47183 * 294.11966 * 21 13 12 24 24 F 1.39907 * 109.46600 * 54.12137 * 21 13 12 25 25 H 0.97003 * 119.99830 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46915 * 63.34228 * 12 10 9 27 27 H 1.08997 * 109.47578 * 303.33828 * 12 10 9 28 28 H 1.07996 * 119.99870 * 359.97438 * 16 15 13 29 29 H 1.07997 * 119.99579 * 180.22841 * 17 16 15 30 30 H 1.08001 * 119.99321 * 179.83023 * 18 17 16 31 31 H 1.07999 * 119.99697 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.00298 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 1.2835 2.7465 0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3335 -2.3700 -0.0005 10 6 2.0650 -3.4966 -0.0016 11 8 3.2755 -3.4331 -0.0020 12 6 1.3808 -4.8393 -0.0011 13 6 2.4325 -5.9475 0.0814 14 1 3.0800 -5.7706 0.9402 15 6 3.2589 -5.9507 -1.1787 16 6 2.6523 -6.1629 -2.4026 17 6 3.4099 -6.1618 -3.5589 18 6 4.7753 -5.9567 -3.4905 19 6 5.3826 -5.7497 -2.2661 20 6 4.6244 -5.7469 -1.1102 21 6 1.7360 -7.3008 0.2380 22 9 2.6876 -8.3245 0.1789 23 9 1.0778 -7.3466 1.4716 24 9 0.8058 -7.4686 -0.7935 25 1 -0.4850 0.8401 0.0004 26 1 0.8039 -4.9534 -0.9189 27 1 0.7136 -4.9068 0.8582 28 1 1.5862 -6.3268 -2.4556 29 1 2.9354 -6.3239 -4.5154 30 1 5.3674 -5.9586 -4.3936 31 1 6.4493 -5.5899 -2.2126 32 1 5.0990 -5.5850 -0.1536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728656454.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = -212.412260 kcal Electronic energy + Delta-G solvation = -23196.412132 eV Core-core repulsion = 19093.259745 eV Total energy + Delta-G solvation = -4103.152387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.08014 -47.55666 -47.53156 -39.62423 -38.64756 -35.66632 -34.12709 -32.16901 -30.72779 -29.71244 -27.30903 -25.10789 -23.34930 -22.44108 -21.27018 -19.84881 -18.45722 -18.33639 -17.80568 -17.46322 -16.67226 -16.05147 -15.48934 -14.85837 -14.66458 -14.42101 -14.39037 -14.28172 -14.24124 -13.95413 -13.74375 -13.66475 -13.20171 -13.08421 -12.85237 -12.53095 -12.00002 -11.87238 -11.66241 -11.47743 -11.13979 -10.84932 -10.75811 -10.48248 -10.38284 -9.84246 -9.13515 -8.69208 -8.60895 -8.52357 -6.43027 -4.11092 1.43951 1.63789 2.77647 3.10672 3.17133 3.21072 3.48141 3.66523 3.82980 4.02967 4.07391 4.17769 4.68741 4.78644 4.88694 5.06581 5.10728 5.16930 5.27299 5.38094 5.62914 5.74594 5.79250 5.93886 6.12348 6.22683 6.60479 6.67975 6.69798 6.74773 7.16758 7.36831 7.92587 8.66694 9.05551 9.81329 10.74842 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.005417 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.180871 B = 5167.779272 C = 6100.990805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.381 4.381 8 H 0.096 0.904 9 O -0.212 6.212 10 C 0.403 3.597 11 O -0.546 6.546 12 C -0.103 4.103 13 C -0.075 4.075 14 H 0.129 0.871 15 C -0.078 4.078 16 C -0.112 4.112 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.066 4.066 21 C 0.459 3.541 22 F -0.179 7.179 23 F -0.181 7.181 24 F -0.180 7.180 25 H 0.270 0.730 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.650 -13.588 -2.861 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.113 0.887 9 O -0.119 6.119 10 C 0.248 3.752 11 O -0.443 6.443 12 C -0.141 4.141 13 C -0.095 4.095 14 H 0.147 0.853 15 C -0.078 4.078 16 C -0.130 4.130 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.084 4.084 21 C 0.405 3.595 22 F -0.161 7.161 23 F -0.163 7.163 24 F -0.161 7.161 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.744 -13.428 -2.854 14.524 hybrid contribution 0.209 0.680 0.040 0.713 sum 4.953 -12.747 -2.813 13.962 Atomic orbital electron populations 1.69985 1.05992 1.27818 1.46395 1.25329 0.95805 0.98848 0.96187 0.85750 0.78644 0.79495 0.79327 1.19503 1.20355 1.19489 1.21159 0.92324 0.79724 1.52561 0.88676 1.83861 1.39282 1.13294 1.75493 1.22562 0.86620 0.86782 0.79187 1.90568 1.15224 1.87879 1.50594 1.21111 0.97036 0.89855 1.06121 1.21178 0.97792 0.89301 1.01192 0.85330 1.19125 0.94007 1.02209 0.92507 1.21169 1.00278 0.99501 0.92089 1.21018 0.94106 1.01108 0.97946 1.21133 0.94944 0.99714 0.97614 1.21078 0.99836 1.00838 0.92549 1.20913 0.92658 0.95952 0.98838 1.20473 0.77264 0.88143 0.73595 1.93179 1.64226 1.62612 1.96068 1.93188 1.82149 1.96915 1.44016 1.93143 1.67545 1.96260 1.59188 0.91999 0.87710 0.87644 0.85540 0.86119 0.86343 0.86120 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.20 13.67 55.48 0.76 -24.44 16 2 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 3 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.38 -11.11 9.64 30.92 0.30 -10.81 16 8 H 0.10 2.77 6.86 -52.49 -0.36 2.41 16 9 O -0.21 -5.95 9.75 -20.72 -0.20 -6.15 16 10 C 0.40 9.42 7.69 36.01 0.28 9.70 16 11 O -0.55 -13.44 13.40 -19.05 -0.26 -13.69 16 12 C -0.10 -1.79 4.89 -27.88 -0.14 -1.92 16 13 C -0.08 -1.14 1.73 -91.77 -0.16 -1.30 16 14 H 0.13 1.90 7.70 -51.93 -0.40 1.50 16 15 C -0.08 -1.24 3.35 -104.63 -0.35 -1.59 16 16 C -0.11 -1.68 8.44 -39.58 -0.33 -2.01 16 17 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 18 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 19 C -0.12 -1.74 10.05 -39.59 -0.40 -2.14 16 20 C -0.07 -1.02 8.62 -39.58 -0.34 -1.36 16 21 C 0.46 6.29 2.66 37.16 0.10 6.39 16 22 F -0.18 -2.47 16.87 2.25 0.04 -2.43 16 23 F -0.18 -2.48 16.93 2.25 0.04 -2.44 16 24 F -0.18 -2.44 14.42 2.25 0.03 -2.41 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.10 1.70 6.93 -51.93 -0.36 1.34 16 27 H 0.11 1.65 7.82 -51.93 -0.41 1.25 16 28 H 0.13 1.74 5.95 -52.49 -0.31 1.43 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.83 7.95 -52.48 -0.42 1.41 16 LS Contribution 294.25 15.07 4.43 4.43 Total: -1.00 -31.89 294.25 -4.77 -36.67 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -2.66 Total: 2.27 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.94 Total: -7.97 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.76 Total: -24.44 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.46 Total: -19.85 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.11 Total: -7.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.89 -4.77 -36.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728656454.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.745 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds