Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86801 * 119.99943 * 2 1 4 4 H 1.48498 * 109.47175 * 239.99925 * 3 2 1 5 5 H 1.48495 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46643 * 120.00464 * 3 2 1 7 7 C 1.38751 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99790 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.34319 * 116.99832 * 179.97438 * 9 7 2 11 11 O 1.21210 * 119.99581 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99816 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.46800 * 183.33609 * 12 10 9 14 14 H 1.09004 * 109.46830 * 53.79053 * 13 12 10 15 15 C 1.50699 * 109.47506 * 293.78701 * 13 12 10 16 16 C 1.38235 * 120.00023 * 299.72909 * 15 13 12 17 17 C 1.38237 * 119.99683 * 179.80572 * 16 15 13 18 18 C 1.38238 * 119.99955 * 0.39856 * 17 16 15 19 19 C 1.38232 * 120.00070 * 359.85416 * 18 17 16 20 20 C 1.38233 * 119.99851 * 119.99750 * 15 13 12 21 21 C 1.53002 * 109.46899 * 173.78531 * 13 12 10 22 22 F 1.39895 * 109.46887 * 174.11759 * 21 13 12 23 23 F 1.39899 * 109.47183 * 294.11966 * 21 13 12 24 24 F 1.39907 * 109.46600 * 54.12137 * 21 13 12 25 25 H 0.97003 * 119.99830 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46915 * 63.34228 * 12 10 9 27 27 H 1.08997 * 109.47578 * 303.33828 * 12 10 9 28 28 H 1.07996 * 119.99870 * 359.97438 * 16 15 13 29 29 H 1.07997 * 119.99579 * 180.22841 * 17 16 15 30 30 H 1.08001 * 119.99321 * 179.83023 * 18 17 16 31 31 H 1.07999 * 119.99697 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.00298 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 1.2835 2.7465 0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3335 -2.3700 -0.0005 10 6 2.0650 -3.4966 -0.0016 11 8 3.2755 -3.4331 -0.0020 12 6 1.3808 -4.8393 -0.0011 13 6 2.4325 -5.9475 0.0814 14 1 3.0800 -5.7706 0.9402 15 6 3.2589 -5.9507 -1.1787 16 6 2.6523 -6.1629 -2.4026 17 6 3.4099 -6.1618 -3.5589 18 6 4.7753 -5.9567 -3.4905 19 6 5.3826 -5.7497 -2.2661 20 6 4.6244 -5.7469 -1.1102 21 6 1.7360 -7.3008 0.2380 22 9 2.6876 -8.3245 0.1789 23 9 1.0778 -7.3466 1.4716 24 9 0.8058 -7.4686 -0.7935 25 1 -0.4850 0.8401 0.0004 26 1 0.8039 -4.9534 -0.9189 27 1 0.7136 -4.9068 0.8582 28 1 1.5862 -6.3268 -2.4556 29 1 2.9354 -6.3239 -4.5154 30 1 5.3674 -5.9586 -4.3936 31 1 6.4493 -5.5899 -2.2126 32 1 5.0990 -5.5850 -0.1536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728656454.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = -229.590033 kcal Electronic energy + Delta-G solvation = -23197.157016 eV Core-core repulsion = 19093.259745 eV Total energy + Delta-G solvation = -4103.897271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.19708 -48.66523 -48.64462 -41.24235 -40.09211 -37.46463 -35.59713 -34.28221 -31.81228 -30.96154 -28.75001 -27.05976 -24.53913 -23.55239 -22.67624 -21.38845 -19.87366 -19.59004 -19.53075 -18.80206 -18.01609 -17.59426 -16.91831 -16.44439 -16.25208 -16.06260 -15.76023 -15.52714 -15.36906 -15.06123 -14.85814 -14.78456 -14.50266 -14.39104 -14.12276 -14.02773 -13.60819 -13.31751 -13.18480 -12.89521 -12.73650 -12.29535 -12.17517 -12.00910 -11.94888 -11.83134 -11.02477 -10.68465 -9.79321 -9.68187 -8.52506 -6.31714 0.33368 0.53356 1.32553 1.33763 1.49057 1.60504 1.65971 2.10322 2.48738 2.68880 2.88287 2.99331 3.04624 3.11265 3.62186 3.64810 3.88278 4.14930 4.18862 4.27628 4.38825 4.51033 4.63904 4.75042 4.79072 5.05105 5.15215 5.19259 5.53183 5.60718 5.62475 5.84483 6.10569 6.68126 6.93080 7.78120 8.68120 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.005417 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.180871 B = 5167.779272 C = 6100.990805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.005 4.005 3 Si 1.014 2.986 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.416 4.416 8 H 0.084 0.916 9 O -0.247 6.247 10 C 0.404 3.596 11 O -0.558 6.558 12 C -0.095 4.095 13 C -0.071 4.071 14 H 0.128 0.872 15 C -0.099 4.099 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.133 4.133 20 C -0.090 4.090 21 C 0.472 3.528 22 F -0.177 7.177 23 F -0.179 7.179 24 F -0.177 7.177 25 H 0.278 0.722 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 -13.728 -3.652 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.205 4.205 3 Si 0.833 3.167 4 H -0.187 1.187 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.102 0.898 9 O -0.155 6.155 10 C 0.251 3.749 11 O -0.455 6.455 12 C -0.132 4.132 13 C -0.090 4.090 14 H 0.146 0.854 15 C -0.099 4.099 16 C -0.147 4.147 17 C -0.147 4.147 18 C -0.136 4.136 19 C -0.151 4.151 20 C -0.108 4.108 21 C 0.418 3.582 22 F -0.159 7.159 23 F -0.161 7.161 24 F -0.158 7.158 25 H 0.087 0.913 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.312 -13.601 -3.642 15.049 hybrid contribution 0.085 0.591 0.253 0.648 sum 5.398 -13.010 -3.389 14.488 Atomic orbital electron populations 1.70073 1.07623 1.29326 1.47183 1.26486 0.96826 1.02285 0.94878 0.84731 0.77616 0.74610 0.79730 1.18724 1.18585 1.18586 1.21350 0.92147 0.81027 1.54662 0.89831 1.83884 1.40377 1.14193 1.77085 1.23663 0.86756 0.87635 0.76862 1.90547 1.16174 1.88316 1.50418 1.21171 0.97559 0.86827 1.07645 1.21092 0.97225 0.89348 1.01370 0.85392 1.19276 0.94323 1.03291 0.92975 1.21397 1.00943 1.00008 0.92357 1.21418 0.94522 1.00174 0.98633 1.21537 0.95174 0.98422 0.98435 1.21420 1.00983 1.00267 0.92450 1.21098 0.93062 0.97123 0.99538 1.20093 0.77096 0.87376 0.73676 1.93184 1.64273 1.62338 1.96072 1.93198 1.82064 1.96871 1.43926 1.93151 1.67363 1.96197 1.59083 0.91299 0.86299 0.85792 0.84833 0.83595 0.83344 0.84072 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.21 13.67 21.62 0.30 -52.91 16 2 C 0.00 -0.26 5.49 84.87 0.47 0.20 16 3 Si 1.01 43.09 29.55 68.60 2.03 45.12 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.42 -24.77 9.64 67.94 0.66 -24.11 16 8 H 0.08 5.01 6.86 -2.91 -0.02 4.99 16 9 O -0.25 -14.16 9.75 14.79 0.14 -14.02 16 10 C 0.40 19.14 7.69 71.24 0.55 19.69 16 11 O -0.56 -27.92 13.40 20.77 0.28 -27.64 16 12 C -0.09 -3.22 4.89 29.85 0.15 -3.07 16 13 C -0.07 -2.10 1.73 -11.54 -0.02 -2.12 16 14 H 0.13 3.77 7.70 -2.39 -0.02 3.76 16 15 C -0.10 -3.05 3.35 -19.87 -0.07 -3.12 16 16 C -0.13 -3.70 8.44 22.27 0.19 -3.52 16 17 C -0.13 -3.27 10.05 22.27 0.22 -3.04 16 18 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 19 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 20 C -0.09 -2.77 8.62 22.27 0.19 -2.58 16 21 C 0.47 12.30 2.66 71.98 0.19 12.49 16 22 F -0.18 -4.66 16.87 44.97 0.76 -3.90 16 23 F -0.18 -4.63 16.93 44.97 0.76 -3.87 16 24 F -0.18 -4.50 14.42 44.97 0.65 -3.85 16 25 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.12 3.74 6.93 -2.38 -0.02 3.73 16 27 H 0.12 3.77 7.82 -2.39 -0.02 3.75 16 28 H 0.13 3.50 5.95 -2.91 -0.02 3.48 16 29 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.12 3.62 7.95 -2.91 -0.02 3.60 16 Total: -1.00 -69.07 294.25 9.05 -60.02 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.17 Total: 16.17 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 2.97 Total: -15.13 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.30 Total: -52.91 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: 0.42 Total: -41.66 kcal Atomic # 9 Polarization: -13.78 SS G_CDS: 2.17 Total: -11.61 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -69.07 9.05 -60.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728656454.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.571 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds