Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 120.00570 * 2 1 4 4 H 1.48494 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47249 * 300.00231 * 3 2 1 6 6 H 1.48499 * 109.47086 * 60.00074 * 3 2 1 7 7 C 1.38656 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00089 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.35747 * 117.00054 * 185.05855 * 9 7 2 11 11 C 1.38880 * 120.06932 * 354.46588 * 10 9 7 12 12 C 1.38097 * 119.93186 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.07258 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93597 * 179.97438 * 13 12 11 15 15 N 1.46502 * 109.46947 * 90.00175 * 14 13 12 16 16 C 1.34782 * 119.99631 * 180.02562 * 15 14 13 17 17 O 1.21611 * 120.00302 * 359.97438 * 16 15 14 18 18 C 1.47420 * 119.99529 * 179.97438 * 16 15 14 19 19 C 1.36096 * 126.44648 * 179.97438 * 18 16 15 20 20 O 1.34255 * 106.94893 * 180.29819 * 19 18 16 21 21 C 1.34054 * 108.22677 * 359.57930 * 20 19 18 22 22 N 1.29933 * 109.24415 * 0.43309 * 21 20 19 23 23 C 1.38303 * 120.13501 * 0.25464 * 13 12 11 24 24 C 1.38106 * 120.06945 * 359.45295 * 23 13 12 25 25 H 0.97005 * 119.99340 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.03667 * 0.02562 * 11 10 9 27 27 H 1.08004 * 119.96459 * 180.02562 * 12 11 10 28 28 H 1.09001 * 109.47205 * 330.00536 * 14 13 12 29 29 H 1.08999 * 109.47523 * 210.00146 * 14 13 12 30 30 H 0.97000 * 120.00449 * 0.02562 * 15 14 13 31 31 H 1.07995 * 126.52686 * 0.03989 * 19 18 16 32 32 H 1.08007 * 125.37978 * 180.17100 * 21 20 19 33 33 H 1.07999 * 119.96712 * 179.70443 * 23 13 12 34 34 H 1.07999 * 120.03584 * 180.27632 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7096 1.3462 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8911 2.3963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3345 -2.3685 -0.0005 10 6 2.0697 -3.5047 0.1056 11 6 3.4570 -3.4397 0.0921 12 6 4.2021 -4.5974 0.1997 13 6 3.5684 -5.8207 0.3203 14 6 4.3845 -7.0821 0.4369 15 7 4.6560 -7.3591 1.8496 16 6 5.3754 -8.4446 2.1973 17 8 5.7987 -9.1943 1.3383 18 6 5.6491 -8.7231 3.6188 19 6 6.3562 -9.7747 4.1152 20 8 6.3576 -9.6494 5.4518 21 6 5.6748 -8.5404 5.7697 22 7 5.2417 -7.9775 4.6817 23 6 2.1871 -5.8894 0.3281 24 6 1.4363 -4.7346 0.2269 25 1 -0.4849 0.8401 -0.0004 26 1 3.9525 -2.4847 -0.0023 27 1 5.2809 -4.5474 0.1898 28 1 5.3268 -6.9558 -0.0962 29 1 3.8305 -7.9147 0.0033 30 1 4.3182 -6.7614 2.5348 31 1 6.8233 -10.5626 3.5430 32 1 5.5071 -8.1751 6.7722 33 1 1.6950 -6.8466 0.4176 34 1 0.3577 -4.7884 0.2376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729369415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = -14.102626 kcal Electronic energy + Delta-G solvation = -20873.620859 eV Core-core repulsion = 17353.217314 eV Total energy + Delta-G solvation = -3520.403545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.70065 -39.64647 -38.97076 -36.86712 -35.14623 -34.40822 -32.36495 -30.80855 -30.27512 -29.82677 -26.20080 -25.14633 -23.60491 -22.91676 -22.05002 -20.70318 -20.61757 -18.72718 -18.06549 -17.10255 -17.02100 -16.68377 -16.03373 -15.29532 -15.22201 -14.63241 -14.54508 -14.36893 -13.95033 -13.71275 -13.64844 -13.33974 -12.82030 -12.77046 -12.15508 -11.72033 -11.60581 -11.41203 -11.13185 -11.00773 -10.79097 -10.68305 -10.47502 -10.27759 -9.50671 -9.41741 -8.98434 -8.91303 -8.27534 -7.32599 -6.52718 -4.11428 0.85630 1.79620 2.05236 2.14255 2.39469 3.07082 3.10007 3.15687 3.19785 3.24969 3.80544 3.90877 4.48237 4.55321 4.71850 5.02149 5.16397 5.20785 5.23476 5.31706 5.40812 5.66324 5.74143 5.80042 5.90267 6.13039 6.35146 6.43232 6.60519 6.81021 6.95974 7.10440 7.15535 7.27688 7.35789 7.58406 7.72398 7.92290 8.12486 8.92837 9.61113 10.64937 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002888 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.174299 B = 9692.753551 C =10169.955625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.162 3.838 11 C -0.237 4.237 12 C -0.049 4.049 13 C -0.216 4.216 14 C 0.178 3.822 15 N -0.701 5.701 16 C 0.595 3.405 17 O -0.545 6.545 18 C -0.071 4.071 19 C 0.012 3.988 20 O -0.202 6.202 21 C 0.178 3.822 22 N -0.464 5.464 23 C -0.053 4.053 24 C -0.195 4.195 25 H 0.271 0.729 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.411 0.589 31 H 0.230 0.770 32 H 0.255 0.745 33 H 0.113 0.887 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 -14.860 9.143 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.107 3.893 11 C -0.256 4.256 12 C -0.068 4.068 13 C -0.217 4.217 14 C 0.056 3.944 15 N -0.351 5.351 16 C 0.380 3.620 17 O -0.424 6.424 18 C -0.191 4.191 19 C -0.062 4.062 20 O -0.087 6.087 21 C -0.051 4.051 22 N -0.193 5.193 23 C -0.072 4.072 24 C -0.214 4.214 25 H 0.081 0.919 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.247 0.753 31 H 0.246 0.754 32 H 0.271 0.729 33 H 0.131 0.869 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.289 -14.592 8.460 19.757 hybrid contribution 0.645 0.654 0.455 1.025 sum 10.934 -13.938 8.915 19.832 Atomic orbital electron populations 1.70050 1.06014 1.27749 1.45560 1.25324 0.95864 0.98944 0.96360 0.85625 0.79165 0.80199 0.78326 1.19026 1.20074 1.20057 1.21412 0.91907 0.80714 1.52863 0.88853 1.83978 1.34523 1.11567 1.77527 1.19437 0.90312 0.88045 0.91524 1.21157 0.93779 0.98940 1.11729 1.20640 0.98397 0.91617 0.96156 1.19173 0.93580 0.93528 1.15456 1.20065 0.98725 0.95157 0.80424 1.46199 1.52990 1.25921 1.10037 1.16812 0.78688 0.81572 0.84889 1.90813 1.53129 1.48601 1.49855 1.21924 1.05651 0.96619 0.94907 1.25311 1.00166 1.00793 0.79975 1.84445 1.58769 1.41493 1.23965 1.28176 0.93088 0.83099 1.00725 1.70811 1.21693 1.29015 0.97791 1.20533 0.92730 0.96878 0.97036 1.20215 0.99684 0.90224 1.11314 0.91933 0.85382 0.87374 0.91247 0.91202 0.75270 0.75366 0.72905 0.86931 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 9 O -0.17 -4.84 9.76 0.06 0.00 -4.84 16 10 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.24 -4.97 9.17 -39.40 -0.36 -5.33 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.22 -3.54 5.25 -104.58 -0.55 -4.09 16 14 C 0.18 2.55 5.80 -5.20 -0.03 2.52 16 15 N -0.70 -9.70 5.55 -62.57 -0.35 -10.05 16 16 C 0.60 8.36 7.81 -12.52 -0.10 8.26 16 17 O -0.55 -8.81 16.89 5.27 0.09 -8.72 16 18 C -0.07 -0.84 6.99 -83.02 -0.58 -1.42 16 19 C 0.01 0.10 11.95 29.96 0.36 0.46 16 20 O -0.20 -1.58 10.73 6.50 0.07 -1.51 16 21 C 0.18 1.30 13.19 51.96 0.69 1.98 16 22 N -0.46 -5.14 11.06 -11.48 -0.13 -5.27 16 23 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 24 C -0.20 -3.98 9.99 -39.39 -0.39 -4.37 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 27 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.41 5.65 8.19 -40.82 -0.33 5.31 16 31 H 0.23 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.26 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -32.99 313.49 -4.65 -37.64 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -2.99 Total: 7.43 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.80 Total: -10.48 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.28 Total: -39.33 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.16 Total: -15.07 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.99 -4.65 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729369415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.533 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds