Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 120.00570 * 2 1 4 4 H 1.48494 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47249 * 300.00231 * 3 2 1 6 6 H 1.48499 * 109.47086 * 60.00074 * 3 2 1 7 7 C 1.38656 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00089 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.35747 * 117.00054 * 185.05855 * 9 7 2 11 11 C 1.38880 * 120.06932 * 354.46588 * 10 9 7 12 12 C 1.38097 * 119.93186 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.07258 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93597 * 179.97438 * 13 12 11 15 15 N 1.46502 * 109.46947 * 90.00175 * 14 13 12 16 16 C 1.34782 * 119.99631 * 180.02562 * 15 14 13 17 17 O 1.21611 * 120.00302 * 359.97438 * 16 15 14 18 18 C 1.47420 * 119.99529 * 179.97438 * 16 15 14 19 19 C 1.36096 * 126.44648 * 179.97438 * 18 16 15 20 20 O 1.34255 * 106.94893 * 180.29819 * 19 18 16 21 21 C 1.34054 * 108.22677 * 359.57930 * 20 19 18 22 22 N 1.29933 * 109.24415 * 0.43309 * 21 20 19 23 23 C 1.38303 * 120.13501 * 0.25464 * 13 12 11 24 24 C 1.38106 * 120.06945 * 359.45295 * 23 13 12 25 25 H 0.97005 * 119.99340 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.03667 * 0.02562 * 11 10 9 27 27 H 1.08004 * 119.96459 * 180.02562 * 12 11 10 28 28 H 1.09001 * 109.47205 * 330.00536 * 14 13 12 29 29 H 1.08999 * 109.47523 * 210.00146 * 14 13 12 30 30 H 0.97000 * 120.00449 * 0.02562 * 15 14 13 31 31 H 1.07995 * 126.52686 * 0.03989 * 19 18 16 32 32 H 1.08007 * 125.37978 * 180.17100 * 21 20 19 33 33 H 1.07999 * 119.96712 * 179.70443 * 23 13 12 34 34 H 1.07999 * 120.03584 * 180.27632 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7096 1.3462 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8911 2.3963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3345 -2.3685 -0.0005 10 6 2.0697 -3.5047 0.1056 11 6 3.4570 -3.4397 0.0921 12 6 4.2021 -4.5974 0.1997 13 6 3.5684 -5.8207 0.3203 14 6 4.3845 -7.0821 0.4369 15 7 4.6560 -7.3591 1.8496 16 6 5.3754 -8.4446 2.1973 17 8 5.7987 -9.1943 1.3383 18 6 5.6491 -8.7231 3.6188 19 6 6.3562 -9.7747 4.1152 20 8 6.3576 -9.6494 5.4518 21 6 5.6748 -8.5404 5.7697 22 7 5.2417 -7.9775 4.6817 23 6 2.1871 -5.8894 0.3281 24 6 1.4363 -4.7346 0.2269 25 1 -0.4849 0.8401 -0.0004 26 1 3.9525 -2.4847 -0.0023 27 1 5.2809 -4.5474 0.1898 28 1 5.3268 -6.9558 -0.0962 29 1 3.8305 -7.9147 0.0033 30 1 4.3182 -6.7614 2.5348 31 1 6.8233 -10.5626 3.5430 32 1 5.5071 -8.1751 6.7722 33 1 1.6950 -6.8466 0.4176 34 1 0.3577 -4.7884 0.2376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729369415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = -40.097410 kcal Electronic energy + Delta-G solvation = -20874.748077 eV Core-core repulsion = 17353.217314 eV Total energy + Delta-G solvation = -3521.530763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.36112 -41.00120 -40.41709 -38.50710 -35.94160 -35.60216 -34.28013 -31.88840 -31.73108 -31.05723 -27.80645 -26.71225 -24.59048 -23.66701 -23.58071 -22.16410 -21.62024 -19.91179 -19.59093 -18.84077 -17.69962 -17.56801 -17.12738 -16.62462 -16.34991 -16.01166 -15.91316 -15.68504 -15.53836 -15.15065 -14.81836 -14.47142 -14.39353 -14.24946 -13.69870 -13.34694 -13.05696 -12.60029 -12.41790 -12.36195 -12.26586 -12.09716 -11.84447 -11.40427 -11.21468 -10.82038 -10.31843 -10.01597 -9.82716 -9.03495 -8.49208 -6.17473 0.12631 0.51610 0.56153 1.08578 1.35746 1.42989 1.53807 1.77809 2.16445 2.21471 2.25004 2.82816 3.11017 3.20820 3.46912 3.78136 3.89625 3.94667 4.00714 4.15446 4.42682 4.54514 4.56406 4.65885 4.72473 4.78471 5.01976 5.13302 5.18804 5.24575 5.31484 5.50357 5.67423 5.72570 6.00674 6.13679 6.32131 6.61612 6.95694 7.05990 7.74554 8.73913 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002888 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.174299 B = 9692.753551 C =10169.955625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.244 4.244 12 C -0.046 4.046 13 C -0.185 4.185 14 C 0.183 3.817 15 N -0.702 5.702 16 C 0.597 3.403 17 O -0.571 6.571 18 C -0.108 4.108 19 C 0.032 3.968 20 O -0.197 6.197 21 C 0.198 3.802 22 N -0.504 5.504 23 C -0.044 4.044 24 C -0.204 4.204 25 H 0.273 0.727 26 H 0.121 0.879 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.412 0.588 31 H 0.253 0.747 32 H 0.300 0.700 33 H 0.147 0.853 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.308 -16.785 10.498 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.263 4.263 12 C -0.064 4.064 13 C -0.186 4.186 14 C 0.061 3.939 15 N -0.352 5.352 16 C 0.384 3.616 17 O -0.452 6.452 18 C -0.226 4.226 19 C -0.043 4.043 20 O -0.082 6.082 21 C -0.031 4.031 22 N -0.233 5.233 23 C -0.062 4.062 24 C -0.224 4.224 25 H 0.082 0.918 26 H 0.139 0.861 27 H 0.157 0.843 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.248 0.752 31 H 0.269 0.731 32 H 0.315 0.685 33 H 0.165 0.835 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.824 -16.567 9.820 23.138 hybrid contribution 0.012 0.843 0.141 0.854 sum 12.836 -15.724 9.962 22.611 Atomic orbital electron populations 1.70189 1.08044 1.28830 1.48614 1.26593 0.96836 1.02758 0.95748 0.84525 0.78286 0.74827 0.78564 1.17416 1.19389 1.19323 1.21882 0.92587 0.81332 1.53186 0.87914 1.83948 1.36049 1.12659 1.80779 1.19978 0.91590 0.87959 0.93160 1.21243 0.93047 1.00026 1.11972 1.20944 0.99825 0.90770 0.94870 1.19488 0.93545 0.94165 1.11433 1.20012 0.98797 0.93952 0.81171 1.46060 1.53299 1.26223 1.09573 1.17050 0.77860 0.80877 0.85833 1.90792 1.54161 1.49324 1.50928 1.21723 1.08300 0.98539 0.94081 1.25735 0.98256 0.99995 0.80329 1.84500 1.58679 1.41698 1.23372 1.29179 0.90601 0.81798 1.01488 1.70766 1.23579 1.30323 0.98615 1.20889 0.93053 0.97081 0.95177 1.20453 1.00126 0.90371 1.11423 0.91764 0.86108 0.84343 0.90439 0.90178 0.75168 0.73080 0.68535 0.83498 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.81 13.67 21.61 0.30 -55.52 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 3 Si 1.02 42.26 29.55 68.60 2.03 44.29 16 4 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.41 -23.72 9.49 67.92 0.64 -23.08 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -13.51 9.76 -22.71 -0.22 -13.73 16 10 C 0.12 6.02 6.65 22.58 0.15 6.17 16 11 C -0.24 -10.28 9.17 22.39 0.21 -10.07 16 12 C -0.05 -1.52 9.69 22.25 0.22 -1.30 16 13 C -0.19 -5.58 5.25 -19.84 -0.10 -5.69 16 14 C 0.18 4.65 5.80 85.63 0.50 5.15 16 15 N -0.70 -17.71 5.55 -470.11 -2.61 -20.32 16 16 C 0.60 15.55 7.81 86.66 0.68 16.23 16 17 O -0.57 -17.33 16.89 -4.07 -0.07 -17.40 16 18 C -0.11 -2.32 6.99 40.41 0.28 -2.04 16 19 C 0.03 0.47 11.95 67.32 0.80 1.27 16 20 O -0.20 -2.43 10.73 0.36 0.00 -2.43 16 21 C 0.20 2.22 13.19 130.52 1.72 3.94 16 22 N -0.50 -9.99 11.06 -305.13 -3.37 -13.36 16 23 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 24 C -0.20 -8.41 9.99 22.39 0.22 -8.19 16 25 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 26 H 0.12 5.20 5.64 -2.91 -0.02 5.19 16 27 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 28 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 29 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 30 H 0.41 10.43 8.19 -92.71 -0.76 9.67 16 31 H 0.25 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.30 -0.02 8.06 -2.91 -0.02 -0.04 16 33 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 34 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -76.45 313.49 2.46 -73.99 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.40 Total: 24.02 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 6.00 Total: -19.54 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -5.69 Total: -89.20 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.29 Total: -33.56 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -76.45 2.46 -73.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729369415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.895 kcal (2) G-P(sol) polarization free energy of solvation -76.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds