Wall clock time and date at job start Tue Mar 31 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99955 * 2 1 4 4 H 1.48494 * 109.47024 * 270.00058 * 3 2 1 5 5 H 1.48502 * 109.47115 * 29.99894 * 3 2 1 6 6 H 1.48500 * 109.46976 * 150.00129 * 3 2 1 7 7 C 1.38697 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00241 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99986 * 180.02562 * 7 2 1 10 10 C 1.35515 * 117.00034 * 185.05111 * 9 7 2 11 11 C 1.38834 * 120.16496 * 354.39344 * 10 9 7 12 12 C 1.38013 * 120.07724 * 179.97438 * 11 10 9 13 13 C 1.38578 * 120.40203 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32181 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91983 * 359.97438 * 14 13 12 16 16 C 1.47530 * 120.19719 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00236 * 179.97438 * 16 15 14 18 18 N 1.34776 * 120.00247 * 0.02562 * 16 15 14 19 19 C 1.46500 * 120.00393 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47183 * 179.97438 * 19 18 16 21 21 C 1.34323 * 126.16728 * 95.00189 * 20 19 18 22 22 O 1.34756 * 107.11583 * 179.97438 * 21 20 19 23 23 C 1.33964 * 107.75385 * 359.97438 * 22 21 20 24 24 N 1.30262 * 108.76234 * 359.73235 * 23 22 21 25 25 H 0.97010 * 120.00030 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.95717 * 359.97438 * 11 10 9 27 27 H 1.08006 * 119.80230 * 180.28477 * 12 11 10 28 28 H 1.08001 * 119.83885 * 179.97438 * 13 12 11 29 29 H 1.07995 * 120.03668 * 179.97438 * 14 13 12 30 30 H 0.97008 * 119.99700 * 359.97438 * 18 16 15 31 31 H 1.08998 * 109.46627 * 299.99893 * 19 18 16 32 32 H 1.09002 * 109.47071 * 59.99574 * 19 18 16 33 33 H 1.08007 * 126.44474 * 0.02562 * 21 20 19 34 34 H 1.08000 * 125.61960 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0086 -1.2012 -0.0005 8 1 1.4687 -2.1365 -0.0005 9 8 3.3568 -1.2012 0.0000 10 6 3.9720 -2.4039 -0.1069 11 6 3.2243 -3.5736 -0.0936 12 6 3.8528 -4.7975 -0.2031 13 6 5.2312 -4.8695 -0.3264 14 6 5.9896 -3.7188 -0.3403 15 6 5.3676 -2.4731 -0.2304 16 6 6.1734 -1.2374 -0.2452 17 8 5.6282 -0.1548 -0.1498 18 7 7.5139 -1.3084 -0.3656 19 6 8.3142 -0.0814 -0.3798 20 6 9.7723 -0.4343 -0.5227 21 6 10.4682 -0.4795 -1.6707 22 8 11.7296 -0.8342 -1.3562 23 6 11.7883 -0.9996 -0.0281 24 7 10.6131 -0.7537 0.4771 25 1 -0.4851 0.8401 -0.0004 26 1 2.1496 -3.5257 0.0025 27 1 3.2664 -5.7045 -0.1969 28 1 5.7135 -5.8321 -0.4110 29 1 7.0635 -3.7803 -0.4362 30 1 7.9489 -2.1721 -0.4422 31 1 8.0072 0.5429 -1.2189 32 1 8.1620 0.4625 0.5525 33 1 10.0884 -0.2700 -2.6599 34 1 12.6666 -1.2849 0.5320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730764707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:34 Heat of formation + Delta-G solvation = -1.443296 kcal Electronic energy + Delta-G solvation = -21722.101855 eV Core-core repulsion = 18202.247260 eV Total energy + Delta-G solvation = -3519.854595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.63473 -39.77740 -38.30160 -36.52930 -35.67751 -33.92563 -32.44859 -31.28890 -30.15481 -29.20024 -26.67540 -25.23581 -23.14473 -23.04954 -21.66367 -21.11745 -20.14099 -18.32016 -17.89986 -17.46334 -16.86215 -16.36167 -15.64346 -15.46779 -15.00520 -14.67887 -14.42203 -14.19766 -14.04679 -13.72084 -13.60413 -12.92895 -12.66226 -12.35467 -12.33452 -12.16232 -11.55049 -11.39370 -11.26847 -10.85421 -10.81934 -10.71371 -10.04261 -9.66602 -9.39779 -8.98845 -8.88775 -8.79226 -8.38117 -7.47895 -6.46760 -4.11865 1.14431 1.57231 2.19029 2.27525 2.56835 3.32531 3.38322 3.55826 3.64420 3.67488 3.88323 4.36319 4.49868 4.54364 4.67714 4.73804 5.09427 5.26338 5.30532 5.38653 5.47123 5.60041 5.67364 5.78623 5.95031 5.97326 6.03973 6.37625 6.54407 6.69698 6.83009 7.00741 7.14800 7.40766 7.48077 7.67657 7.91397 7.95291 8.82921 8.89260 9.51857 10.58302 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.004606 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.933469 B = 6077.049692 C = 7492.214300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.397 4.397 8 H 0.108 0.892 9 O -0.165 6.165 10 C 0.202 3.798 11 C -0.227 4.227 12 C -0.050 4.050 13 C -0.221 4.221 14 C -0.040 4.040 15 C -0.226 4.226 16 C 0.563 3.437 17 O -0.517 6.517 18 N -0.737 5.737 19 C 0.205 3.795 20 C -0.030 4.030 21 C -0.050 4.050 22 O -0.206 6.206 23 C 0.169 3.831 24 N -0.475 5.475 25 H 0.282 0.718 26 H 0.139 0.861 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.395 0.605 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.219 0.781 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.519 -4.976 -2.983 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.472 4.472 8 H 0.126 0.874 9 O -0.065 6.065 10 C 0.144 3.856 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.240 4.240 14 C -0.059 4.059 15 C -0.231 4.231 16 C 0.353 3.647 17 O -0.393 6.393 18 N -0.392 5.392 19 C 0.081 3.919 20 C -0.149 4.149 21 C -0.122 4.122 22 O -0.091 6.091 23 C -0.058 4.058 24 N -0.204 5.204 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.235 0.765 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 19.842 -3.781 -2.257 20.325 hybrid contribution 0.570 0.105 -0.697 0.906 sum 20.412 -3.675 -2.954 20.949 Atomic orbital electron populations 1.69641 1.05822 1.28955 1.46114 1.24494 0.94961 0.99309 0.94592 0.86202 0.81345 0.80403 0.79582 1.19939 1.21246 1.16055 1.20931 0.77120 0.96777 1.52342 0.87434 1.83778 1.22087 1.24954 1.75699 1.19010 0.90243 0.85830 0.90503 1.21284 1.01380 0.91633 1.10278 1.20966 0.94358 0.96782 0.94780 1.20537 0.94022 0.97301 1.12169 1.20755 0.98051 0.91318 0.95730 1.18810 0.91142 0.92743 1.20395 1.18186 0.80830 0.89489 0.76184 1.90863 1.70917 1.29322 1.48192 1.45865 1.06647 1.08583 1.78144 1.19330 0.81110 0.87728 1.03746 1.21825 0.97926 1.06322 0.88836 1.24982 0.81368 1.04266 1.01559 1.84516 1.31244 1.65718 1.27669 1.28170 0.98792 1.00620 0.78250 1.70406 1.01001 1.15664 1.33309 0.90824 0.84386 0.86809 0.87020 0.86977 0.76993 0.89851 0.89901 0.76457 0.73401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.31 13.96 55.48 0.77 -24.54 16 2 C 0.07 2.07 5.49 -17.52 -0.10 1.98 16 3 Si 0.90 23.21 28.62 -169.99 -4.86 18.35 16 4 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.24 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.40 -11.37 9.95 30.90 0.31 -11.06 16 8 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 9 O -0.17 -4.55 6.67 -21.04 -0.14 -4.69 16 10 C 0.20 4.79 6.66 -38.60 -0.26 4.53 16 11 C -0.23 -4.79 9.16 -39.44 -0.36 -5.15 16 12 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 13 C -0.22 -3.46 10.03 -39.61 -0.40 -3.86 16 14 C -0.04 -0.64 9.53 -39.20 -0.37 -1.02 16 15 C -0.23 -4.62 5.89 -104.81 -0.62 -5.24 16 16 C 0.56 11.45 7.76 -12.47 -0.10 11.35 16 17 O -0.52 -12.82 15.17 -16.57 -0.25 -13.07 16 18 N -0.74 -11.21 5.50 -62.53 -0.34 -11.56 16 19 C 0.20 2.79 6.21 -5.19 -0.03 2.75 16 20 C -0.03 -0.34 6.47 -82.81 -0.54 -0.87 16 21 C -0.05 -0.44 12.08 29.35 0.35 -0.08 16 22 O -0.21 -1.76 10.78 5.36 0.06 -1.70 16 23 C 0.17 1.33 13.23 52.10 0.69 2.02 16 24 N -0.48 -5.52 11.30 -11.18 -0.13 -5.65 16 25 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.14 3.02 5.64 -52.48 -0.30 2.73 16 27 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 28 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.11 1.41 6.40 -52.49 -0.34 1.08 16 30 H 0.40 5.07 6.49 -40.82 -0.27 4.81 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.22 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.25 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 306.60 15.07 4.62 4.62 Total: -1.00 -35.14 306.60 -4.94 -40.08 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -2.85 Total: 4.06 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.81 Total: -5.91 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.30 Total: -41.74 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.33 Total: -19.46 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.86 Total: 18.35 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.14 -4.94 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730764707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.636 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds