Wall clock time and date at job start Tue Mar 31 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99955 * 2 1 4 4 H 1.48494 * 109.47024 * 270.00058 * 3 2 1 5 5 H 1.48502 * 109.47115 * 29.99894 * 3 2 1 6 6 H 1.48500 * 109.46976 * 150.00129 * 3 2 1 7 7 C 1.38697 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00241 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99986 * 180.02562 * 7 2 1 10 10 C 1.35515 * 117.00034 * 185.05111 * 9 7 2 11 11 C 1.38834 * 120.16496 * 354.39344 * 10 9 7 12 12 C 1.38013 * 120.07724 * 179.97438 * 11 10 9 13 13 C 1.38578 * 120.40203 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32181 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91983 * 359.97438 * 14 13 12 16 16 C 1.47530 * 120.19719 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00236 * 179.97438 * 16 15 14 18 18 N 1.34776 * 120.00247 * 0.02562 * 16 15 14 19 19 C 1.46500 * 120.00393 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47183 * 179.97438 * 19 18 16 21 21 C 1.34323 * 126.16728 * 95.00189 * 20 19 18 22 22 O 1.34756 * 107.11583 * 179.97438 * 21 20 19 23 23 C 1.33964 * 107.75385 * 359.97438 * 22 21 20 24 24 N 1.30262 * 108.76234 * 359.73235 * 23 22 21 25 25 H 0.97010 * 120.00030 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.95717 * 359.97438 * 11 10 9 27 27 H 1.08006 * 119.80230 * 180.28477 * 12 11 10 28 28 H 1.08001 * 119.83885 * 179.97438 * 13 12 11 29 29 H 1.07995 * 120.03668 * 179.97438 * 14 13 12 30 30 H 0.97008 * 119.99700 * 359.97438 * 18 16 15 31 31 H 1.08998 * 109.46627 * 299.99893 * 19 18 16 32 32 H 1.09002 * 109.47071 * 59.99574 * 19 18 16 33 33 H 1.08007 * 126.44474 * 0.02562 * 21 20 19 34 34 H 1.08000 * 125.61960 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0086 -1.2012 -0.0005 8 1 1.4687 -2.1365 -0.0005 9 8 3.3568 -1.2012 0.0000 10 6 3.9720 -2.4039 -0.1069 11 6 3.2243 -3.5736 -0.0936 12 6 3.8528 -4.7975 -0.2031 13 6 5.2312 -4.8695 -0.3264 14 6 5.9896 -3.7188 -0.3403 15 6 5.3676 -2.4731 -0.2304 16 6 6.1734 -1.2374 -0.2452 17 8 5.6282 -0.1548 -0.1498 18 7 7.5139 -1.3084 -0.3656 19 6 8.3142 -0.0814 -0.3798 20 6 9.7723 -0.4343 -0.5227 21 6 10.4682 -0.4795 -1.6707 22 8 11.7296 -0.8342 -1.3562 23 6 11.7883 -0.9996 -0.0281 24 7 10.6131 -0.7537 0.4771 25 1 -0.4851 0.8401 -0.0004 26 1 2.1496 -3.5257 0.0025 27 1 3.2664 -5.7045 -0.1969 28 1 5.7135 -5.8321 -0.4110 29 1 7.0635 -3.7803 -0.4362 30 1 7.9489 -2.1721 -0.4422 31 1 8.0072 0.5429 -1.2189 32 1 8.1620 0.4625 0.5525 33 1 10.0884 -0.2700 -2.6599 34 1 12.6666 -1.2849 0.5320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730764707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:33 Heat of formation + Delta-G solvation = -29.332724 kcal Electronic energy + Delta-G solvation = -21723.311231 eV Core-core repulsion = 18202.247260 eV Total energy + Delta-G solvation = -3521.063971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.32078 -41.40407 -39.94271 -38.16951 -36.70543 -35.07815 -34.51187 -32.57863 -31.23385 -30.80441 -27.85905 -27.11567 -24.59963 -23.69569 -23.02124 -22.24695 -21.66559 -19.81504 -19.66104 -18.53085 -17.91958 -17.58405 -17.03654 -16.48481 -16.39519 -16.05634 -15.86912 -15.61416 -15.57852 -15.43831 -14.99027 -14.43768 -14.22286 -14.03149 -13.80662 -13.51354 -13.10932 -12.85653 -12.58561 -12.39362 -12.33560 -12.02229 -11.57306 -11.54271 -10.96598 -10.83166 -10.22453 -9.97320 -9.85094 -9.15600 -8.57613 -6.26551 0.03858 0.48389 0.64106 1.25608 1.30521 1.48974 1.59123 1.97870 1.99964 2.30407 2.41545 2.75887 3.01397 3.15386 3.17762 3.72020 3.87418 4.00456 4.03627 4.25077 4.46646 4.48764 4.54250 4.63401 4.79238 4.81118 4.89688 5.05150 5.27928 5.29921 5.37347 5.46948 5.61163 5.68996 5.83442 6.14771 6.56205 6.73304 6.79296 7.32899 7.58654 8.52795 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.004606 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.933469 B = 6077.049692 C = 7492.214300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.404 4.404 8 H 0.093 0.907 9 O -0.209 6.209 10 C 0.163 3.837 11 C -0.250 4.250 12 C -0.041 4.041 13 C -0.189 4.189 14 C -0.030 4.030 15 C -0.234 4.234 16 C 0.557 3.443 17 O -0.571 6.571 18 N -0.711 5.711 19 C 0.207 3.793 20 C -0.058 4.058 21 C -0.028 4.028 22 O -0.205 6.205 23 C 0.188 3.812 24 N -0.521 5.521 25 H 0.286 0.714 26 H 0.116 0.884 27 H 0.152 0.848 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.410 0.590 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.248 0.752 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.769 -7.794 -3.893 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.480 4.480 8 H 0.110 0.890 9 O -0.113 6.113 10 C 0.110 3.890 11 C -0.269 4.269 12 C -0.059 4.059 13 C -0.207 4.207 14 C -0.049 4.049 15 C -0.238 4.238 16 C 0.348 3.652 17 O -0.450 6.450 18 N -0.366 5.366 19 C 0.083 3.917 20 C -0.176 4.176 21 C -0.101 4.101 22 O -0.091 6.091 23 C -0.039 4.039 24 N -0.250 5.250 25 H 0.096 0.904 26 H 0.134 0.866 27 H 0.170 0.830 28 H 0.184 0.816 29 H 0.177 0.823 30 H 0.248 0.752 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.264 0.736 34 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges 24.158 -6.660 -3.173 25.259 hybrid contribution -0.319 0.576 -0.437 0.790 sum 23.840 -6.084 -3.611 24.867 Atomic orbital electron populations 1.69684 1.06442 1.29586 1.49383 1.25037 0.95622 1.01423 0.95264 0.85418 0.79045 0.78484 0.79150 1.19906 1.19077 1.19132 1.20909 0.78353 0.96341 1.52406 0.89011 1.83766 1.20837 1.26922 1.79742 1.19743 0.91975 0.85750 0.91566 1.21337 1.00637 0.92886 1.12038 1.21448 0.95804 0.96263 0.92381 1.21225 0.93102 0.99277 1.07139 1.21298 1.00503 0.89540 0.93523 1.19238 0.90071 0.94825 1.19683 1.18361 0.82323 0.88783 0.75782 1.90846 1.72317 1.31125 1.50740 1.45647 1.05001 1.10138 1.75813 1.19255 0.82892 0.86801 1.02714 1.21448 0.96741 1.09269 0.90127 1.25415 0.80961 1.01851 1.01834 1.84570 1.30895 1.65553 1.28065 1.29117 0.98829 0.97903 0.78007 1.70351 1.02559 1.17784 1.34328 0.90429 0.86577 0.83008 0.81614 0.82279 0.75224 0.89374 0.92395 0.73639 0.69122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.99 13.96 21.62 0.30 -55.69 16 2 C 0.03 1.64 5.49 84.85 0.47 2.11 16 3 Si 0.96 51.08 28.62 68.60 1.96 53.04 16 4 H -0.27 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -15.40 7.11 99.48 0.71 -14.69 16 7 C -0.40 -24.84 9.95 67.93 0.68 -24.17 16 8 H 0.09 5.69 5.44 -2.91 -0.02 5.68 16 9 O -0.21 -12.26 6.67 0.89 0.01 -12.25 16 10 C 0.16 7.96 6.66 22.91 0.15 8.12 16 11 C -0.25 -10.69 9.16 22.36 0.20 -10.48 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 13 C -0.19 -4.76 10.03 22.25 0.22 -4.54 16 14 C -0.03 -0.84 9.53 22.52 0.21 -0.63 16 15 C -0.23 -9.35 5.89 -19.99 -0.12 -9.47 16 16 C 0.56 22.79 7.76 86.69 0.67 23.47 16 17 O -0.57 -29.62 15.17 16.90 0.26 -29.37 16 18 N -0.71 -20.65 5.50 -470.01 -2.58 -23.24 16 19 C 0.21 5.55 6.21 85.63 0.53 6.08 16 20 C -0.06 -1.20 6.47 41.26 0.27 -0.93 16 21 C -0.03 -0.40 12.08 66.92 0.81 0.41 16 22 O -0.21 -2.70 10.78 -3.74 -0.04 -2.74 16 23 C 0.19 2.28 13.23 130.48 1.73 4.01 16 24 N -0.52 -10.92 11.30 -304.07 -3.43 -14.36 16 25 H 0.29 16.17 8.31 -92.70 -0.77 15.40 16 26 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 27 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 28 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.16 2.95 6.40 -2.91 -0.02 2.93 16 30 H 0.41 9.15 6.49 -92.70 -0.60 8.55 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.25 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.29 0.30 8.06 -2.91 -0.02 0.27 16 Total: -1.00 -85.19 306.60 3.08 -82.10 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.56 Total: 9.56 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 6.05 Total: -7.06 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -5.72 Total: -93.28 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: 0.22 Total: -44.36 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 1.96 Total: 53.04 kcal Total: -85.19 3.08 -82.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730764707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.769 kcal (2) G-P(sol) polarization free energy of solvation -85.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds