Wall clock time and date at job start Tue Mar 31 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 S 1.81007 * 109.46853 * 269.97745 * 14 13 12 16 16 C 1.76201 * 99.99911 * 180.02562 * 15 14 13 17 17 N 1.32564 * 119.22443 * 359.73077 * 16 15 14 18 18 C 1.32261 * 120.73312 * 179.71776 * 17 16 15 19 19 C 1.38617 * 119.20414 * 0.54630 * 18 17 16 20 20 C 1.38624 * 118.56898 * 359.72916 * 19 18 17 21 21 N 1.32253 * 119.20505 * 0.02562 * 20 19 18 22 22 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 23 23 C 1.38101 * 120.07230 * 0.04164 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 28 28 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 29 29 H 1.08002 * 120.39606 * 180.27530 * 18 17 16 30 30 H 1.08006 * 120.71235 * 179.75262 * 19 18 17 31 31 H 1.08000 * 120.39525 * 180.02562 * 20 19 18 32 32 H 1.07999 * 119.96698 * 180.02562 * 22 13 12 33 33 H 1.07992 * 120.03608 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 16 4.7040 -7.7509 1.2072 16 6 5.6473 -9.1771 0.7821 17 7 5.8912 -9.4346 -0.4952 18 6 6.6006 -10.4938 -0.8477 19 6 7.0805 -11.3443 0.1361 20 6 6.8024 -11.0486 1.4615 21 7 6.0913 -9.9706 1.7467 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8156 -1.0337 28 1 5.3321 -6.8566 -0.9342 29 1 6.7998 -10.6960 -1.8898 30 1 7.6590 -12.2184 -0.1246 31 1 7.1621 -11.6908 2.2518 32 1 5.2812 -4.5470 -0.1947 33 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731155975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:45 Heat of formation + Delta-G solvation = 43.169446 kcal Electronic energy + Delta-G solvation = -18416.947754 eV Core-core repulsion = 15341.780584 eV Total energy + Delta-G solvation = -3075.167170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93334 -39.11566 -36.78024 -33.97156 -32.53617 -32.27448 -31.15527 -30.24365 -26.43329 -25.21808 -24.72243 -24.42752 -22.04906 -20.71054 -18.61531 -18.06101 -17.66762 -16.99433 -16.16699 -15.26830 -15.15742 -14.84184 -14.69756 -14.49847 -14.00312 -13.78282 -13.67225 -13.50721 -12.99480 -12.77346 -12.18952 -11.69315 -11.63555 -11.19493 -11.11749 -10.94171 -10.79686 -10.69389 -10.46780 -10.38174 -10.34017 -9.50317 -9.40559 -8.88627 -8.27133 -7.74683 -7.25021 -6.52235 -4.10009 0.55720 0.85874 1.14080 2.00460 2.16202 2.62906 3.10051 3.11118 3.16687 3.45840 3.91556 3.98549 4.30541 4.46364 4.52966 4.82372 4.85921 5.02996 5.12777 5.18282 5.24720 5.46952 5.65578 5.76897 5.85526 5.99765 6.14431 6.33673 6.60788 6.68826 6.81806 6.97671 7.15600 7.27277 7.36353 7.67565 7.72330 7.92840 8.93195 9.61440 10.65316 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.045632 B = 0.002757 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.460561 B =10154.277904 C =10344.873457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.095 0.905 9 O -0.172 6.172 10 C 0.162 3.838 11 C -0.193 4.193 12 C -0.052 4.052 13 C -0.190 4.190 14 C -0.035 4.035 15 S 0.003 5.997 16 C 0.294 3.706 17 N -0.527 5.527 18 C 0.162 3.838 19 C -0.249 4.249 20 C 0.161 3.839 21 N -0.507 5.507 22 C -0.048 4.048 23 C -0.235 4.235 24 H 0.271 0.729 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.146 0.854 31 H 0.170 0.830 32 H 0.110 0.890 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.621 -18.472 -1.122 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.212 4.212 12 C -0.072 4.072 13 C -0.194 4.194 14 C -0.183 4.183 15 S 0.244 5.756 16 C -0.080 4.080 17 N -0.245 5.245 18 C -0.007 4.007 19 C -0.275 4.275 20 C -0.009 4.009 21 N -0.224 5.224 22 C -0.068 4.068 23 C -0.254 4.254 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.186 0.814 30 H 0.164 0.836 31 H 0.187 0.813 32 H 0.128 0.872 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.259 -16.965 0.257 20.363 hybrid contribution 1.534 -0.626 -1.453 2.204 sum 12.793 -17.590 -1.196 21.784 Atomic orbital electron populations 1.70045 1.06020 1.27788 1.45418 1.25332 0.95869 0.98963 0.96350 0.85620 0.79180 0.80167 0.78323 1.19000 1.20073 1.20053 1.21427 0.91943 0.80695 1.52748 0.88796 1.83975 1.34546 1.11578 1.77309 1.19441 0.90317 0.88034 0.91569 1.20193 0.99706 0.90171 1.11165 1.20512 0.92528 0.97030 0.97108 1.18634 0.93264 0.92103 1.15372 1.22268 1.03371 0.98242 0.94438 1.86560 1.58742 1.16449 1.13887 1.25506 0.96206 0.99184 0.87083 1.68890 1.16605 1.20455 1.18522 1.23228 0.88746 0.88109 1.00639 1.22770 1.05803 1.03588 0.95383 1.23271 0.89778 0.91864 0.95950 1.68604 1.12163 1.05243 1.36417 1.20621 0.98512 0.91525 0.96126 1.21144 0.93749 0.98918 1.11615 0.91910 0.86197 0.86765 0.88858 0.88914 0.81413 0.83604 0.81335 0.87205 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.17 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 9 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 10 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 11 C -0.19 -3.98 9.99 -39.39 -0.39 -4.38 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.19 -3.22 5.14 -104.58 -0.54 -3.75 16 14 C -0.04 -0.51 4.93 36.00 0.18 -0.33 16 15 S 0.00 0.04 22.23 -107.50 -2.39 -2.35 16 16 C 0.29 4.12 7.85 -90.83 -0.71 3.41 16 17 N -0.53 -6.65 9.14 -13.44 -0.12 -6.77 16 18 C 0.16 1.46 11.30 -17.23 -0.19 1.26 16 19 C -0.25 -1.83 10.16 -39.30 -0.40 -2.23 16 20 C 0.16 1.47 11.30 -17.23 -0.19 1.27 16 21 N -0.51 -6.70 10.40 -13.44 -0.14 -6.84 16 22 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 23 C -0.23 -4.99 9.17 -39.39 -0.36 -5.35 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.09 1.27 8.05 -51.91 -0.42 0.85 16 28 H 0.09 1.27 8.06 -51.91 -0.42 0.86 16 29 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 31 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -31.80 310.54 -8.76 -40.57 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.08 Total: 2.92 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -3.45 Total: -18.54 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.50 Total: -37.62 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.00 Total: -4.80 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.39 Total: -2.35 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.80 -8.76 -40.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731155975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.735 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds