Wall clock time and date at job start Tue Mar 31 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 S 1.81007 * 109.46853 * 269.97745 * 14 13 12 16 16 C 1.76201 * 99.99911 * 180.02562 * 15 14 13 17 17 N 1.32564 * 119.22443 * 359.73077 * 16 15 14 18 18 C 1.32261 * 120.73312 * 179.71776 * 17 16 15 19 19 C 1.38617 * 119.20414 * 0.54630 * 18 17 16 20 20 C 1.38624 * 118.56898 * 359.72916 * 19 18 17 21 21 N 1.32253 * 119.20505 * 0.02562 * 20 19 18 22 22 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 23 23 C 1.38101 * 120.07230 * 0.04164 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 28 28 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 29 29 H 1.08002 * 120.39606 * 180.27530 * 18 17 16 30 30 H 1.08006 * 120.71235 * 179.75262 * 19 18 17 31 31 H 1.08000 * 120.39525 * 180.02562 * 20 19 18 32 32 H 1.07999 * 119.96698 * 180.02562 * 22 13 12 33 33 H 1.07992 * 120.03608 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 16 4.7040 -7.7509 1.2072 16 6 5.6473 -9.1771 0.7821 17 7 5.8912 -9.4346 -0.4952 18 6 6.6006 -10.4938 -0.8477 19 6 7.0805 -11.3443 0.1361 20 6 6.8024 -11.0486 1.4615 21 7 6.0913 -9.9706 1.7467 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8156 -1.0337 28 1 5.3321 -6.8566 -0.9342 29 1 6.7998 -10.6960 -1.8898 30 1 7.6590 -12.2184 -0.1246 31 1 7.1621 -11.6908 2.2518 32 1 5.2812 -4.5470 -0.1947 33 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731155975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:45 Heat of formation + Delta-G solvation = 23.734426 kcal Electronic energy + Delta-G solvation = -18417.790520 eV Core-core repulsion = 15341.780584 eV Total energy + Delta-G solvation = -3076.009936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.71289 -40.82318 -38.48712 -34.79464 -34.41081 -33.05531 -32.66195 -31.83663 -28.04206 -26.85789 -25.49510 -25.36149 -23.67610 -22.28004 -19.89805 -19.49035 -18.82762 -18.45339 -16.94945 -16.54897 -16.39491 -16.07223 -16.01545 -15.98129 -15.52439 -15.22268 -14.90692 -14.56427 -14.36782 -14.33545 -13.74392 -13.39045 -13.05951 -12.65857 -12.40928 -12.35193 -12.09369 -11.98364 -11.95247 -11.43943 -11.23207 -11.11856 -10.79486 -10.31150 -9.83595 -8.94997 -8.80411 -8.48623 -6.16345 -0.20796 -0.00753 0.15189 0.56344 0.73217 1.31464 1.36166 1.46637 1.54379 2.17239 2.69506 2.82656 3.15552 3.27751 3.46680 3.63792 3.77948 3.81772 3.92417 4.15049 4.23982 4.30422 4.39206 4.54683 4.67712 4.74921 4.84634 5.02043 5.12918 5.24029 5.37477 5.50852 5.67085 5.69013 5.96982 6.01055 6.12994 6.87811 6.96093 7.74814 8.74465 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.045632 B = 0.002757 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.460561 B =10154.277904 C =10344.873457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.227 6.227 10 C 0.124 3.876 11 C -0.202 4.202 12 C -0.045 4.045 13 C -0.164 4.164 14 C -0.023 4.023 15 S -0.031 6.031 16 C 0.275 3.725 17 N -0.545 5.545 18 C 0.148 3.852 19 C -0.222 4.222 20 C 0.146 3.854 21 N -0.538 5.538 22 C -0.047 4.047 23 C -0.242 4.242 24 H 0.273 0.727 25 H 0.119 0.881 26 H 0.149 0.851 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.204 0.796 30 H 0.191 0.809 31 H 0.203 0.797 32 H 0.141 0.859 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.947 -21.742 -1.860 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.133 6.133 10 C 0.072 3.928 11 C -0.222 4.222 12 C -0.065 4.065 13 C -0.167 4.167 14 C -0.171 4.171 15 S 0.209 5.791 16 C -0.100 4.100 17 N -0.263 5.263 18 C -0.020 4.020 19 C -0.247 4.247 20 C -0.021 4.021 21 N -0.255 5.255 22 C -0.067 4.067 23 C -0.261 4.261 24 H 0.082 0.918 25 H 0.137 0.863 26 H 0.167 0.833 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.220 0.780 30 H 0.208 0.792 31 H 0.220 0.780 32 H 0.158 0.842 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.633 -20.313 -0.497 25.040 hybrid contribution 0.773 -0.231 -1.253 1.490 sum 15.406 -20.544 -1.750 25.738 Atomic orbital electron populations 1.70185 1.08041 1.28843 1.48574 1.26603 0.96849 1.02769 0.95751 0.84520 0.78295 0.74790 0.78556 1.17398 1.19317 1.19382 1.21892 0.92614 0.81316 1.53147 0.87886 1.83947 1.36016 1.12636 1.80699 1.19974 0.91585 0.87981 0.93243 1.20437 1.00179 0.90306 1.11248 1.20880 0.92898 0.97266 0.95466 1.19010 0.93364 0.93089 1.11196 1.22132 1.03426 0.96793 0.94753 1.86506 1.60553 1.18592 1.13489 1.25048 0.97659 0.99285 0.87990 1.68839 1.17594 1.22128 1.17771 1.23950 0.87949 0.87300 1.02820 1.23268 1.03587 1.03740 0.94073 1.23968 0.89004 0.91073 0.98087 1.68522 1.13362 1.06649 1.36993 1.20936 0.99960 0.90747 0.95048 1.21236 0.93046 0.99994 1.11809 0.91756 0.86328 0.83344 0.87622 0.87858 0.77977 0.79184 0.78031 0.84170 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.20 13.67 21.62 0.30 -55.90 16 2 C -0.02 -1.24 5.49 84.84 0.47 -0.77 16 3 Si 1.02 42.69 29.55 68.60 2.03 44.71 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.41 -23.95 9.49 67.92 0.64 -23.31 16 8 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 9 O -0.23 -13.59 9.76 -22.72 -0.22 -13.81 16 10 C 0.12 6.13 6.65 22.58 0.15 6.28 16 11 C -0.20 -8.56 9.99 22.39 0.22 -8.34 16 12 C -0.05 -1.53 9.69 22.25 0.22 -1.32 16 13 C -0.16 -5.21 5.14 -19.84 -0.10 -5.32 16 14 C -0.02 -0.60 4.93 71.24 0.35 -0.25 16 15 S -0.03 -0.86 22.23 -56.49 -1.26 -2.11 16 16 C 0.28 7.13 7.85 180.42 1.42 8.55 16 17 N -0.54 -12.08 9.14 -196.43 -1.80 -13.88 16 18 C 0.15 2.01 11.30 84.72 0.96 2.97 16 19 C -0.22 -2.15 10.16 22.45 0.23 -1.92 16 20 C 0.15 2.12 11.30 84.72 0.96 3.07 16 21 N -0.54 -13.00 10.40 -196.43 -2.04 -15.04 16 22 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 23 C -0.24 -10.46 9.17 22.39 0.21 -10.26 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 26 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.11 2.53 8.05 -2.39 -0.02 2.51 16 28 H 0.10 2.51 8.06 -2.39 -0.02 2.49 16 29 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 30 H 0.19 0.15 8.06 -2.91 -0.02 0.12 16 31 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 Total: -1.00 -75.52 310.54 4.08 -71.45 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.14 Total: 16.61 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 5.93 Total: -32.03 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.54 Total: -84.82 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.22 Total: -13.81 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -1.26 Total: -2.11 kcal Total: -75.52 4.08 -71.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731155975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.182 kcal (2) G-P(sol) polarization free energy of solvation -75.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds