Wall clock time and date at job start Tue Mar 31 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86793 * 120.00105 * 2 1 4 4 H 1.48506 * 109.46964 * 239.99692 * 3 2 1 5 5 H 1.48501 * 109.47303 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47422 * 119.99764 * 3 2 1 7 7 C 1.38653 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99832 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00323 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00486 * 185.05792 * 9 7 2 11 11 C 1.38880 * 120.06524 * 354.46666 * 10 9 7 12 12 C 1.38096 * 119.93002 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06982 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.93188 * 179.97438 * 13 12 11 15 15 O 1.45202 * 109.47141 * 89.99270 * 14 13 12 16 16 C 1.34894 * 116.99800 * 179.97438 * 15 14 13 17 17 O 1.21623 * 119.99947 * 0.02562 * 16 15 14 18 18 C 1.46470 * 119.99990 * 179.72501 * 16 15 14 19 19 C 1.36637 * 125.99820 * 180.27568 * 18 16 15 20 20 C 1.40308 * 106.70627 * 179.97438 * 19 18 16 21 21 C 1.35174 * 107.12291 * 359.97438 * 20 19 18 22 22 O 1.33908 * 108.78313 * 359.75995 * 21 20 19 23 23 C 1.38298 * 120.13604 * 0.24652 * 13 12 11 24 24 C 1.38096 * 120.06791 * 359.45399 * 23 13 12 25 25 H 0.96998 * 119.99403 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.03496 * 359.97438 * 11 10 9 27 27 H 1.08007 * 119.96697 * 179.97438 * 12 11 10 28 28 H 1.08998 * 109.46590 * 329.99526 * 14 13 12 29 29 H 1.08997 * 109.46701 * 209.99348 * 14 13 12 30 30 H 1.08004 * 126.65049 * 0.02562 * 19 18 16 31 31 H 1.07996 * 126.44029 * 179.97438 * 20 19 18 32 32 H 1.08003 * 125.60885 * 180.02562 * 21 20 19 33 33 H 1.07997 * 119.96395 * 179.71309 * 23 13 12 34 34 H 1.08003 * 120.03491 * 180.26972 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6962 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4570 -3.4395 0.0953 12 6 4.2021 -4.5972 0.2040 13 6 3.5682 -5.8205 0.3245 14 6 4.3844 -7.0819 0.4423 15 8 4.6527 -7.3558 1.8428 16 6 5.3773 -8.4585 2.1233 17 8 5.7742 -9.1710 1.2211 18 6 5.6917 -8.7941 3.5139 19 6 6.4172 -9.8725 3.9355 20 6 6.4700 -9.8005 5.3358 21 6 5.7839 -8.6955 5.7037 22 8 5.3213 -8.0889 4.6032 23 6 2.1870 -5.8891 0.3315 24 6 1.4363 -4.7345 0.2294 25 1 -0.4849 0.8401 -0.0004 26 1 3.9525 -2.4847 0.0000 27 1 5.2809 -4.5473 0.1940 28 1 5.3270 -6.9557 -0.0902 29 1 3.8307 -7.9147 0.0088 30 1 6.8642 -10.6325 3.3118 31 1 6.9656 -10.4971 5.9956 32 1 5.6369 -8.3553 6.7181 33 1 1.6949 -6.8463 0.4211 34 1 0.3577 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733389734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:59 Heat of formation + Delta-G solvation = -65.927610 kcal Electronic energy + Delta-G solvation = -20898.285618 eV Core-core repulsion = 17343.342022 eV Total energy + Delta-G solvation = -3554.943596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.96866 -40.22608 -39.06627 -37.05422 -36.08581 -33.41137 -32.45322 -30.98308 -30.28194 -30.02175 -26.24364 -25.13182 -23.70620 -22.09966 -22.06544 -20.78259 -20.59201 -18.72371 -18.08440 -17.30401 -17.02720 -16.82957 -16.25267 -15.81533 -14.78915 -14.63929 -14.45423 -13.77727 -13.71040 -13.55674 -13.32409 -13.14266 -13.02306 -12.85153 -12.77297 -12.31139 -11.74326 -11.42229 -11.14748 -10.84434 -10.83129 -10.66773 -10.54735 -10.47591 -10.40733 -9.42204 -9.08741 -8.91029 -8.27113 -7.34447 -6.52848 -4.11522 0.63823 1.84470 1.98124 2.15503 2.39850 2.73387 3.02541 3.09698 3.13192 3.14030 3.90937 4.38798 4.52768 4.54408 4.79930 5.02470 5.13040 5.16990 5.21915 5.23858 5.39303 5.47148 5.61934 5.64359 5.76067 5.93974 6.12403 6.30936 6.32679 6.54311 6.58973 6.80345 6.96046 7.14221 7.26169 7.35035 7.60682 7.71458 7.91914 8.92241 9.59997 10.64535 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.002893 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.310983 B = 9675.482782 C =10124.333672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.164 3.836 11 C -0.238 4.238 12 C -0.043 4.043 13 C -0.207 4.207 14 C 0.129 3.871 15 O -0.338 6.338 16 C 0.548 3.452 17 O -0.495 6.495 18 C -0.060 4.060 19 C -0.113 4.113 20 C -0.231 4.231 21 C 0.005 3.995 22 O -0.146 6.146 23 C -0.047 4.047 24 C -0.196 4.196 25 H 0.272 0.728 26 H 0.130 0.870 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.214 0.786 33 H 0.114 0.886 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.142 -15.397 8.460 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.073 6.073 10 C 0.109 3.891 11 C -0.257 4.257 12 C -0.062 4.062 13 C -0.208 4.208 14 C 0.057 3.943 15 O -0.255 6.255 16 C 0.392 3.608 17 O -0.385 6.385 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.250 4.250 21 C -0.066 4.066 22 O -0.040 6.040 23 C -0.065 4.065 24 C -0.215 4.215 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.230 0.770 33 H 0.132 0.868 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.600 -15.051 8.086 20.106 hybrid contribution 0.646 0.626 0.060 0.901 sum 11.245 -14.425 8.146 20.022 Atomic orbital electron populations 1.70031 1.06025 1.28020 1.45229 1.25328 0.95871 0.98956 0.96281 0.85753 0.78722 0.79533 0.79292 1.19405 1.20195 1.19378 1.21331 0.91897 0.80714 1.53058 0.88901 1.83976 1.34533 1.11565 1.77260 1.19440 0.90323 0.88040 0.91299 1.21139 0.93775 0.98861 1.11956 1.20626 0.98459 0.91496 0.95571 1.18836 0.93350 0.92774 1.15797 1.21823 0.99252 0.96158 0.77034 1.86839 1.64733 1.41276 1.32617 1.19244 0.75923 0.79609 0.86015 1.90928 1.51251 1.51014 1.45320 1.20951 1.08193 0.96621 0.85320 1.22005 0.98324 0.97522 0.95379 1.21870 1.06726 1.01282 0.95120 1.24601 0.97265 0.93789 0.90900 1.84221 1.60019 1.45883 1.13881 1.20513 0.92584 0.97036 0.96412 1.20193 0.99721 0.90116 1.11490 0.91794 0.85232 0.87267 0.90834 0.90787 0.81880 0.82259 0.76991 0.86825 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.14 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.83 9.49 30.89 0.29 -10.54 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.80 9.76 0.06 0.00 -4.80 16 10 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 11 C -0.24 -5.12 9.17 -39.40 -0.36 -5.48 16 12 C -0.04 -0.80 9.69 -39.61 -0.38 -1.18 16 13 C -0.21 -3.64 5.52 -104.57 -0.58 -4.22 16 14 C 0.13 1.96 5.60 36.01 0.20 2.16 16 15 O -0.34 -5.40 10.22 -42.47 -0.43 -5.84 16 16 C 0.55 8.05 7.93 34.05 0.27 8.32 16 17 O -0.49 -7.81 16.66 -19.36 -0.32 -8.13 16 18 C -0.06 -0.77 7.18 -36.85 -0.26 -1.03 16 19 C -0.11 -1.12 10.62 -39.38 -0.42 -1.54 16 20 C -0.23 -1.75 10.87 -39.89 -0.43 -2.18 16 21 C 0.01 0.04 12.08 29.64 0.36 0.40 16 22 O -0.15 -1.76 10.67 4.74 0.05 -1.71 16 23 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 24 C -0.20 -4.10 9.99 -39.40 -0.39 -4.49 16 25 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 26 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 27 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.21 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 315.48 15.07 4.75 4.75 Total: -1.00 -32.21 315.48 -5.75 -37.96 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.08 Total: 3.05 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.45 Total: -16.36 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.76 Total: -24.04 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.71 Total: -20.48 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.21 -5.75 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733389734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.968 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds