Wall clock time and date at job start Tue Mar 31 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86793 * 120.00105 * 2 1 4 4 H 1.48506 * 109.46964 * 239.99692 * 3 2 1 5 5 H 1.48501 * 109.47303 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47422 * 119.99764 * 3 2 1 7 7 C 1.38653 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99832 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00323 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00486 * 185.05792 * 9 7 2 11 11 C 1.38880 * 120.06524 * 354.46666 * 10 9 7 12 12 C 1.38096 * 119.93002 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06982 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.93188 * 179.97438 * 13 12 11 15 15 O 1.45202 * 109.47141 * 89.99270 * 14 13 12 16 16 C 1.34894 * 116.99800 * 179.97438 * 15 14 13 17 17 O 1.21623 * 119.99947 * 0.02562 * 16 15 14 18 18 C 1.46470 * 119.99990 * 179.72501 * 16 15 14 19 19 C 1.36637 * 125.99820 * 180.27568 * 18 16 15 20 20 C 1.40308 * 106.70627 * 179.97438 * 19 18 16 21 21 C 1.35174 * 107.12291 * 359.97438 * 20 19 18 22 22 O 1.33908 * 108.78313 * 359.75995 * 21 20 19 23 23 C 1.38298 * 120.13604 * 0.24652 * 13 12 11 24 24 C 1.38096 * 120.06791 * 359.45399 * 23 13 12 25 25 H 0.96998 * 119.99403 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.03496 * 359.97438 * 11 10 9 27 27 H 1.08007 * 119.96697 * 179.97438 * 12 11 10 28 28 H 1.08998 * 109.46590 * 329.99526 * 14 13 12 29 29 H 1.08997 * 109.46701 * 209.99348 * 14 13 12 30 30 H 1.08004 * 126.65049 * 0.02562 * 19 18 16 31 31 H 1.07996 * 126.44029 * 179.97438 * 20 19 18 32 32 H 1.08003 * 125.60885 * 180.02562 * 21 20 19 33 33 H 1.07997 * 119.96395 * 179.71309 * 23 13 12 34 34 H 1.08003 * 120.03491 * 180.26972 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6962 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4570 -3.4395 0.0953 12 6 4.2021 -4.5972 0.2040 13 6 3.5682 -5.8205 0.3245 14 6 4.3844 -7.0819 0.4423 15 8 4.6527 -7.3558 1.8428 16 6 5.3773 -8.4585 2.1233 17 8 5.7742 -9.1710 1.2211 18 6 5.6917 -8.7941 3.5139 19 6 6.4172 -9.8725 3.9355 20 6 6.4700 -9.8005 5.3358 21 6 5.7839 -8.6955 5.7037 22 8 5.3213 -8.0889 4.6032 23 6 2.1870 -5.8891 0.3315 24 6 1.4363 -4.7345 0.2294 25 1 -0.4849 0.8401 -0.0004 26 1 3.9525 -2.4847 0.0000 27 1 5.2809 -4.5473 0.1940 28 1 5.3270 -6.9557 -0.0902 29 1 3.8307 -7.9147 0.0088 30 1 6.8642 -10.6325 3.3118 31 1 6.9656 -10.4971 5.9956 32 1 5.6369 -8.3553 6.7181 33 1 1.6949 -6.8463 0.4211 34 1 0.3577 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733389734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:59 Heat of formation + Delta-G solvation = -85.260967 kcal Electronic energy + Delta-G solvation = -20899.123975 eV Core-core repulsion = 17343.342022 eV Total energy + Delta-G solvation = -3555.781953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.71575 -41.40616 -40.75260 -38.60532 -37.43826 -34.38627 -34.13908 -32.33323 -31.87120 -31.04601 -27.88271 -26.74961 -24.76024 -23.71384 -22.79955 -22.22990 -21.64283 -19.92659 -19.62727 -18.94363 -18.25179 -17.84772 -17.19016 -16.87634 -16.39615 -16.22766 -15.98683 -15.58598 -15.23069 -14.69680 -14.38088 -14.32208 -14.10911 -13.97903 -13.85413 -13.61024 -13.52831 -13.05420 -12.65261 -12.46995 -12.32080 -12.15890 -11.97146 -11.77968 -11.22983 -11.11019 -10.82379 -9.86498 -9.81457 -9.09220 -8.50022 -6.18746 -0.22865 0.37642 0.53449 1.30998 1.35376 1.38899 1.48491 1.51707 1.79760 2.09239 2.16711 2.80732 3.12456 3.43540 3.66853 3.84310 3.88268 3.88892 4.02841 4.12309 4.27091 4.34424 4.51168 4.52935 4.71518 4.85813 4.88538 4.96380 5.10059 5.16745 5.20680 5.35078 5.47463 5.63517 5.65973 5.82630 5.98657 6.09283 6.52758 6.94197 7.71632 8.72494 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.002893 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.310983 B = 9675.482782 C =10124.333672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.418 4.418 8 H 0.104 0.896 9 O -0.225 6.225 10 C 0.127 3.873 11 C -0.245 4.245 12 C -0.043 4.043 13 C -0.185 4.185 14 C 0.129 3.871 15 O -0.353 6.353 16 C 0.549 3.451 17 O -0.514 6.514 18 C -0.108 4.108 19 C -0.099 4.099 20 C -0.232 4.232 21 C 0.019 3.981 22 O -0.173 6.173 23 C -0.041 4.041 24 C -0.206 4.206 25 H 0.274 0.726 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.174 0.826 31 H 0.194 0.806 32 H 0.255 0.745 33 H 0.150 0.850 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.799 -17.474 10.061 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.121 0.879 9 O -0.131 6.131 10 C 0.076 3.924 11 C -0.265 4.265 12 C -0.061 4.061 13 C -0.186 4.186 14 C 0.057 3.943 15 O -0.270 6.270 16 C 0.396 3.604 17 O -0.406 6.406 18 C -0.157 4.157 19 C -0.118 4.118 20 C -0.250 4.250 21 C -0.051 4.051 22 O -0.068 6.068 23 C -0.059 4.059 24 C -0.225 4.225 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.159 0.841 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.192 0.808 31 H 0.211 0.789 32 H 0.271 0.729 33 H 0.168 0.832 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.293 -17.192 9.691 23.795 hybrid contribution -0.009 0.828 -0.282 0.874 sum 13.284 -16.364 9.409 23.082 Atomic orbital electron populations 1.70176 1.08059 1.29056 1.48243 1.26616 0.96850 1.02789 0.95579 0.84642 0.77419 0.74145 0.80001 1.18061 1.19586 1.18127 1.21831 0.92658 0.81308 1.53544 0.87854 1.83949 1.36011 1.12628 1.80482 1.19988 0.91606 0.88010 0.92817 1.21250 0.93083 0.99993 1.12130 1.20976 1.00035 0.90702 0.94346 1.19241 0.93562 0.93707 1.12083 1.21820 0.99871 0.95196 0.77419 1.86787 1.65479 1.42314 1.32423 1.19489 0.75161 0.78754 0.86984 1.90904 1.52160 1.51409 1.46150 1.20803 1.11535 0.98600 0.84799 1.22373 0.96284 0.96309 0.96878 1.22296 1.06630 1.01812 0.94251 1.25594 0.95036 0.93070 0.91356 1.84197 1.61022 1.46888 1.14717 1.20913 0.92908 0.97433 0.94613 1.20448 1.00263 0.90235 1.11552 0.91679 0.85682 0.84052 0.89285 0.89025 0.80828 0.78905 0.72901 0.83220 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.89 13.67 21.61 0.30 -55.60 16 2 C -0.02 -1.14 5.49 84.83 0.47 -0.67 16 3 Si 1.02 42.30 29.55 68.60 2.03 44.32 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.42 -24.10 9.49 67.92 0.64 -23.46 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 9 O -0.22 -13.44 9.76 -22.72 -0.22 -13.66 16 10 C 0.13 6.31 6.65 22.58 0.15 6.46 16 11 C -0.25 -10.67 9.17 22.39 0.21 -10.46 16 12 C -0.04 -1.50 9.69 22.25 0.22 -1.29 16 13 C -0.19 -6.10 5.52 -19.83 -0.11 -6.21 16 14 C 0.13 3.54 5.60 71.24 0.40 3.93 16 15 O -0.35 -10.60 10.22 -56.70 -0.58 -11.18 16 16 C 0.55 15.36 7.93 69.97 0.55 15.92 16 17 O -0.51 -15.45 16.66 19.43 0.32 -15.13 16 18 C -0.11 -2.56 7.18 24.04 0.17 -2.39 16 19 C -0.10 -1.72 10.62 22.40 0.24 -1.48 16 20 C -0.23 -2.60 10.87 22.07 0.24 -2.36 16 21 C 0.02 0.23 12.08 67.11 0.81 1.04 16 22 O -0.17 -3.82 10.67 -4.88 -0.05 -3.88 16 23 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 24 C -0.21 -8.74 9.99 22.39 0.22 -8.52 16 25 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.13 5.45 5.64 -2.91 -0.02 5.44 16 27 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 28 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 29 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 30 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 31 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.26 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -75.29 315.48 7.36 -67.93 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.14 Total: 17.85 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 4.43 Total: -30.67 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.30 Total: -55.60 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.53 Total: -43.84 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -75.29 7.36 -67.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733389734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.332 kcal (2) G-P(sol) polarization free energy of solvation -75.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds