Wall clock time and date at job start Tue Mar 31 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47481 * 270.00230 * 3 2 1 5 5 H 1.48504 * 109.47146 * 30.00264 * 3 2 1 6 6 H 1.48501 * 109.47229 * 150.00162 * 3 2 1 7 7 C 1.38652 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00242 * 359.97438 * 7 2 1 9 9 O 1.34830 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.35752 * 117.00277 * 185.05802 * 9 7 2 11 11 C 1.38882 * 120.06445 * 354.46157 * 10 9 7 12 12 C 1.38098 * 119.92860 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06937 * 0.02795 * 12 11 10 14 14 C 1.50698 * 119.93234 * 179.97438 * 13 12 11 15 15 O 1.45199 * 109.47197 * 89.99999 * 14 13 12 16 16 C 1.34779 * 117.00040 * 179.97438 * 15 14 13 17 17 O 1.21535 * 119.99826 * 0.02562 * 16 15 14 18 18 C 1.47234 * 119.99782 * 179.97438 * 16 15 14 19 19 C 1.47052 * 127.19852 * 180.26637 * 18 16 15 20 20 C 1.34159 * 105.94699 * 180.19306 * 19 18 16 21 21 O 1.34215 * 109.14525 * 359.60776 * 20 19 18 22 22 C 1.33627 * 110.92257 * 0.26177 * 21 20 19 23 23 C 1.38309 * 120.13844 * 0.24667 * 13 12 11 24 24 C 1.38098 * 120.06520 * 359.45449 * 23 13 12 25 25 H 0.96994 * 120.00294 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.03641 * 0.02562 * 11 10 9 27 27 H 1.07999 * 119.97027 * 179.97438 * 12 11 10 28 28 H 1.08999 * 109.47270 * 330.00039 * 14 13 12 29 29 H 1.09004 * 109.47457 * 209.99973 * 14 13 12 30 30 H 1.08001 * 127.02734 * 0.06800 * 19 18 16 31 31 H 1.08007 * 125.42530 * 179.87311 * 20 19 18 32 32 H 1.08001 * 125.80618 * 179.97438 * 22 21 20 33 33 H 1.08002 * 119.96378 * 179.70372 * 23 13 12 34 34 H 1.07999 * 120.03263 * 180.27284 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5744 -0.0952 12 6 3.8533 -4.7985 -0.2038 13 6 5.2296 -4.8613 -0.3249 14 6 5.9138 -6.1988 -0.4427 15 8 6.0164 -6.5683 -1.8431 16 6 6.6084 -7.7463 -2.1234 17 8 7.0271 -8.4456 -1.2218 18 6 6.7470 -8.1863 -3.5216 19 6 7.3563 -9.4344 -4.0046 20 6 7.2596 -9.3982 -5.3422 21 8 6.6477 -8.2613 -5.7087 22 6 6.3329 -7.5230 -4.6403 23 6 5.9798 -3.6994 -0.3325 24 6 5.3552 -2.4719 -0.2304 25 1 -0.4850 0.8400 0.0004 26 1 2.1487 -3.5260 -0.0002 27 1 3.2707 -5.7078 -0.1933 28 1 5.3335 -6.9520 0.0902 29 1 6.9121 -6.1357 -0.0095 30 1 7.7942 -10.2189 -3.4052 31 1 7.6137 -10.1642 -6.0164 32 1 5.8357 -6.5644 -4.6590 33 1 7.0547 -3.7519 -0.4224 34 1 5.9411 -1.5648 -0.2409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733425493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:59 Heat of formation + Delta-G solvation = -67.667716 kcal Electronic energy + Delta-G solvation = -20870.173149 eV Core-core repulsion = 17315.154096 eV Total energy + Delta-G solvation = -3555.019053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.85748 -40.16803 -39.23253 -37.12319 -36.04462 -33.24214 -32.53468 -30.95763 -30.37801 -30.06587 -26.46657 -25.03427 -23.82128 -22.20862 -21.78237 -20.72070 -20.52136 -18.54853 -18.01136 -17.45194 -17.11155 -16.61168 -16.11506 -15.99539 -15.03202 -14.88706 -14.39675 -14.12713 -13.92010 -13.68114 -13.27314 -13.10780 -13.01515 -12.79447 -12.57221 -12.31156 -12.21578 -11.50946 -11.08284 -10.87057 -10.79610 -10.59883 -10.52594 -10.22715 -10.19090 -9.48881 -9.15774 -8.96579 -8.38424 -7.51048 -6.51029 -4.17895 0.97297 1.69575 1.80648 2.03105 2.57116 2.92497 2.95524 3.16943 3.20651 3.34493 4.16023 4.32148 4.33789 4.47856 4.72692 4.87464 5.01236 5.10941 5.15584 5.16354 5.32599 5.52903 5.56062 5.65483 5.67409 5.91558 6.02051 6.20901 6.43038 6.43639 6.60830 6.66435 6.90066 7.09820 7.17052 7.48078 7.69663 7.76494 7.93070 8.83379 9.43685 10.56070 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.002878 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.557847 B = 9727.790589 C =10099.988758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.211 6.211 10 C 0.170 3.830 11 C -0.225 4.225 12 C -0.046 4.046 13 C -0.197 4.197 14 C 0.130 3.870 15 O -0.349 6.349 16 C 0.534 3.466 17 O -0.512 6.512 18 C -0.232 4.232 19 C -0.164 4.164 20 C -0.042 4.042 21 O -0.174 6.174 22 C 0.059 3.941 23 C -0.050 4.050 24 C -0.196 4.196 25 H 0.281 0.719 26 H 0.136 0.864 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.211 0.789 32 H 0.224 0.776 33 H 0.115 0.885 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.917 -14.526 -8.385 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.126 0.874 9 O -0.115 6.115 10 C 0.116 3.884 11 C -0.244 4.244 12 C -0.064 4.064 13 C -0.198 4.198 14 C 0.058 3.942 15 O -0.266 6.266 16 C 0.379 3.621 17 O -0.403 6.403 18 C -0.234 4.234 19 C -0.183 4.183 20 C -0.108 4.108 21 O -0.068 6.068 22 C -0.012 4.012 23 C -0.068 4.068 24 C -0.215 4.215 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.179 0.821 31 H 0.227 0.773 32 H 0.240 0.760 33 H 0.133 0.867 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.832 -14.253 -8.347 20.916 hybrid contribution 0.137 0.515 0.384 0.657 sum 12.969 -13.738 -7.963 20.502 Atomic orbital electron populations 1.69638 1.05623 1.28720 1.47187 1.24493 0.95046 0.98952 0.95429 0.86170 0.80346 0.81277 0.79070 1.19762 1.20670 1.18288 1.20801 0.76741 0.96769 1.52411 0.87443 1.83574 1.22801 1.25833 1.79305 1.19186 0.91739 0.85493 0.91948 1.21265 1.01282 0.91647 1.10231 1.20686 0.93107 0.97012 0.95609 1.18929 0.93818 0.92460 1.14551 1.21731 1.00560 0.94404 0.77512 1.86681 1.71528 1.36231 1.32201 1.20007 0.74608 0.79416 0.88088 1.90828 1.46675 1.54946 1.47817 1.20689 1.12339 0.98989 0.91408 1.22758 1.03594 0.97714 0.94200 1.23952 1.01689 0.89322 0.95821 1.83843 1.59386 1.27997 1.35592 1.24872 0.96747 0.96602 0.82958 1.20522 0.98505 0.91136 0.96670 1.20193 0.91949 0.97820 1.11543 0.90870 0.84629 0.86992 0.90953 0.90972 0.82119 0.77277 0.75985 0.86666 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.66 13.96 55.48 0.77 -23.89 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.06 28.62 -169.99 -4.86 16.20 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.39 -10.72 9.95 30.89 0.31 -10.41 16 8 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 9 O -0.21 -5.38 8.59 0.05 0.00 -5.38 16 10 C 0.17 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.23 -4.67 9.17 -39.39 -0.36 -5.03 16 12 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 13 C -0.20 -3.22 5.52 -104.57 -0.58 -3.80 16 14 C 0.13 1.87 5.60 36.00 0.20 2.07 16 15 O -0.35 -5.04 10.06 -40.71 -0.41 -5.45 16 16 C 0.53 7.55 7.95 34.39 0.27 7.82 16 17 O -0.51 -8.41 16.77 -19.29 -0.32 -8.73 16 18 C -0.23 -2.67 6.31 -103.30 -0.65 -3.32 16 19 C -0.16 -1.53 11.01 -37.45 -0.41 -1.94 16 20 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 21 O -0.17 -1.50 10.52 7.72 0.08 -1.42 16 22 C 0.06 0.54 11.94 30.10 0.36 0.90 16 23 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 24 C -0.20 -3.71 9.99 -39.40 -0.39 -4.11 16 25 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.14 2.95 5.64 -52.49 -0.30 2.65 16 27 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 30 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.21 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.22 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -31.36 314.72 -5.12 -36.48 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.09 Total: 2.42 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.03 Total: -14.97 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.77 Total: -23.89 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.65 Total: -20.98 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.36 -5.12 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733425493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.189 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds