Wall clock time and date at job start Tue Mar 31 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47481 * 270.00230 * 3 2 1 5 5 H 1.48504 * 109.47146 * 30.00264 * 3 2 1 6 6 H 1.48501 * 109.47229 * 150.00162 * 3 2 1 7 7 C 1.38652 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00242 * 359.97438 * 7 2 1 9 9 O 1.34830 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.35752 * 117.00277 * 185.05802 * 9 7 2 11 11 C 1.38882 * 120.06445 * 354.46157 * 10 9 7 12 12 C 1.38098 * 119.92860 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06937 * 0.02795 * 12 11 10 14 14 C 1.50698 * 119.93234 * 179.97438 * 13 12 11 15 15 O 1.45199 * 109.47197 * 89.99999 * 14 13 12 16 16 C 1.34779 * 117.00040 * 179.97438 * 15 14 13 17 17 O 1.21535 * 119.99826 * 0.02562 * 16 15 14 18 18 C 1.47234 * 119.99782 * 179.97438 * 16 15 14 19 19 C 1.47052 * 127.19852 * 180.26637 * 18 16 15 20 20 C 1.34159 * 105.94699 * 180.19306 * 19 18 16 21 21 O 1.34215 * 109.14525 * 359.60776 * 20 19 18 22 22 C 1.33627 * 110.92257 * 0.26177 * 21 20 19 23 23 C 1.38309 * 120.13844 * 0.24667 * 13 12 11 24 24 C 1.38098 * 120.06520 * 359.45449 * 23 13 12 25 25 H 0.96994 * 120.00294 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.03641 * 0.02562 * 11 10 9 27 27 H 1.07999 * 119.97027 * 179.97438 * 12 11 10 28 28 H 1.08999 * 109.47270 * 330.00039 * 14 13 12 29 29 H 1.09004 * 109.47457 * 209.99973 * 14 13 12 30 30 H 1.08001 * 127.02734 * 0.06800 * 19 18 16 31 31 H 1.08007 * 125.42530 * 179.87311 * 20 19 18 32 32 H 1.08001 * 125.80618 * 179.97438 * 22 21 20 33 33 H 1.08002 * 119.96378 * 179.70372 * 23 13 12 34 34 H 1.07999 * 120.03263 * 180.27284 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5744 -0.0952 12 6 3.8533 -4.7985 -0.2038 13 6 5.2296 -4.8613 -0.3249 14 6 5.9138 -6.1988 -0.4427 15 8 6.0164 -6.5683 -1.8431 16 6 6.6084 -7.7463 -2.1234 17 8 7.0271 -8.4456 -1.2218 18 6 6.7470 -8.1863 -3.5216 19 6 7.3563 -9.4344 -4.0046 20 6 7.2596 -9.3982 -5.3422 21 8 6.6477 -8.2613 -5.7087 22 6 6.3329 -7.5230 -4.6403 23 6 5.9798 -3.6994 -0.3325 24 6 5.3552 -2.4719 -0.2304 25 1 -0.4850 0.8400 0.0004 26 1 2.1487 -3.5260 -0.0002 27 1 3.2707 -5.7078 -0.1933 28 1 5.3335 -6.9520 0.0902 29 1 6.9121 -6.1357 -0.0095 30 1 7.7942 -10.2189 -3.4052 31 1 7.6137 -10.1642 -6.0164 32 1 5.8357 -6.5644 -4.6590 33 1 7.0547 -3.7519 -0.4224 34 1 5.9411 -1.5648 -0.2409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733425493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:59 Heat of formation + Delta-G solvation = -85.891174 kcal Electronic energy + Delta-G solvation = -20870.963377 eV Core-core repulsion = 17315.154096 eV Total energy + Delta-G solvation = -3555.809281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.54159 -41.35196 -40.82480 -38.65840 -37.30633 -34.51755 -33.99380 -32.31606 -31.87877 -30.87939 -28.03517 -26.60413 -24.91415 -23.76644 -22.43841 -22.14058 -21.52834 -19.88015 -19.34211 -19.15509 -18.23074 -17.57554 -17.11217 -16.95073 -16.55916 -16.15986 -15.80818 -15.68592 -15.44961 -15.02063 -14.55291 -14.37965 -14.14617 -14.04476 -13.86893 -13.75429 -13.41117 -13.12017 -12.66894 -12.52014 -12.34372 -11.97146 -11.75480 -11.73272 -11.30817 -10.95482 -10.92699 -9.87643 -9.81387 -9.16381 -8.51839 -6.25301 0.12724 0.35714 0.51541 1.04838 1.32748 1.35702 1.52488 1.66942 2.00827 2.08903 2.27383 2.75736 3.00516 3.11853 3.56277 3.76227 3.82571 3.88682 4.04351 4.12406 4.27573 4.37329 4.50836 4.55034 4.71255 4.73729 4.88980 4.98727 5.17004 5.26303 5.29234 5.36027 5.50811 5.63960 5.75152 5.84690 5.94259 6.15001 6.68342 6.81956 7.53463 8.59403 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.002878 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.557847 B = 9727.790589 C =10099.988758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.402 4.402 8 H 0.083 0.917 9 O -0.239 6.239 10 C 0.134 3.866 11 C -0.239 4.239 12 C -0.047 4.047 13 C -0.173 4.173 14 C 0.130 3.870 15 O -0.352 6.352 16 C 0.536 3.464 17 O -0.542 6.542 18 C -0.267 4.267 19 C -0.189 4.189 20 C -0.020 4.020 21 O -0.175 6.175 22 C 0.073 3.927 23 C -0.041 4.041 24 C -0.192 4.192 25 H 0.286 0.714 26 H 0.113 0.887 27 H 0.135 0.865 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.254 0.746 32 H 0.242 0.758 33 H 0.156 0.844 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.733 -15.766 -9.818 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.101 0.899 9 O -0.145 6.145 10 C 0.084 3.916 11 C -0.258 4.258 12 C -0.065 4.065 13 C -0.174 4.174 14 C 0.057 3.943 15 O -0.269 6.269 16 C 0.384 3.616 17 O -0.434 6.434 18 C -0.270 4.270 19 C -0.208 4.208 20 C -0.085 4.085 21 O -0.069 6.069 22 C 0.002 3.998 23 C -0.059 4.059 24 C -0.211 4.211 25 H 0.095 0.905 26 H 0.131 0.869 27 H 0.153 0.847 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.182 0.818 31 H 0.269 0.731 32 H 0.258 0.742 33 H 0.174 0.826 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.677 -15.533 -9.794 24.145 hybrid contribution -0.519 0.517 0.741 1.042 sum 15.157 -15.017 -9.054 23.178 Atomic orbital electron populations 1.69723 1.06974 1.29742 1.49667 1.25295 0.95863 1.02236 0.95325 0.85215 0.78851 0.77302 0.79367 1.18957 1.19321 1.18515 1.20726 0.77980 0.96237 1.52848 0.89922 1.83524 1.21368 1.27384 1.82270 1.19738 0.93250 0.85063 0.93556 1.21263 1.00458 0.92873 1.11253 1.20932 0.94141 0.96570 0.94837 1.19253 0.93248 0.93815 1.11042 1.21715 1.01395 0.93162 0.78023 1.86646 1.71806 1.36731 1.31742 1.20385 0.73626 0.78669 0.88945 1.90811 1.48144 1.55607 1.48844 1.20788 1.14837 1.00802 0.90528 1.22955 1.04943 0.97575 0.95358 1.24727 0.99242 0.88857 0.95654 1.83889 1.59241 1.28471 1.35325 1.25184 0.95400 0.96821 0.82408 1.20968 1.00520 0.89839 0.94577 1.20515 0.90535 0.99720 1.10332 0.90469 0.86901 0.84681 0.90198 0.89275 0.81774 0.73068 0.74235 0.82618 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.18 13.96 21.61 0.30 -53.88 16 2 C 0.01 0.66 5.49 84.83 0.47 1.13 16 3 Si 0.97 44.35 28.62 68.60 1.96 46.31 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.40 -23.15 9.95 67.92 0.68 -22.48 16 8 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 9 O -0.24 -12.57 8.59 -22.75 -0.20 -12.77 16 10 C 0.13 6.03 6.65 22.58 0.15 6.18 16 11 C -0.24 -10.18 9.17 22.39 0.21 -9.98 16 12 C -0.05 -1.59 9.69 22.25 0.22 -1.37 16 13 C -0.17 -5.16 5.52 -19.83 -0.11 -5.27 16 14 C 0.13 3.31 5.60 71.24 0.40 3.70 16 15 O -0.35 -9.23 10.06 -56.90 -0.57 -9.80 16 16 C 0.54 14.21 7.95 70.19 0.56 14.77 16 17 O -0.54 -17.03 16.77 19.72 0.33 -16.70 16 18 C -0.27 -5.63 6.31 -19.01 -0.12 -5.75 16 19 C -0.19 -3.14 11.01 23.65 0.26 -2.88 16 20 C -0.02 -0.21 12.03 66.89 0.80 0.59 16 21 O -0.18 -2.47 10.52 4.70 0.05 -2.42 16 22 C 0.07 1.15 11.94 67.41 0.80 1.96 16 23 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 24 C -0.19 -6.94 9.99 22.39 0.22 -6.72 16 25 H 0.29 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.11 5.28 5.64 -2.91 -0.02 5.27 16 27 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 28 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 29 H 0.09 2.04 8.08 -2.38 -0.02 2.02 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.25 0.25 8.06 -2.91 -0.02 0.22 16 32 H 0.24 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -71.12 314.72 7.77 -63.35 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.14 Total: 13.01 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.75 Total: -27.11 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.30 Total: -53.88 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.39 Total: -41.69 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.96 Total: 46.31 kcal Total: -71.12 7.77 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733425493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.538 kcal (2) G-P(sol) polarization free energy of solvation -71.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds