Wall clock time and date at job start Tue Mar 31 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99596 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99449 * 3 2 1 5 5 H 1.48499 * 109.47519 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47306 * 119.99935 * 3 2 1 7 7 C 1.38652 * 120.00647 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00190 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99679 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00391 * 185.05353 * 9 7 2 11 11 C 1.38881 * 120.06278 * 354.47383 * 10 9 7 12 12 C 1.38099 * 119.92826 * 180.02562 * 11 10 9 13 13 C 1.38307 * 120.06873 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.92936 * 179.97438 * 13 12 11 15 15 O 1.45198 * 109.47558 * 90.00034 * 14 13 12 16 16 C 1.34728 * 117.00037 * 180.02562 * 15 14 13 17 17 O 1.21482 * 120.00364 * 359.97438 * 16 15 14 18 18 C 1.47589 * 119.99563 * 179.97438 * 16 15 14 19 19 C 1.41541 * 126.52058 * 179.97438 * 18 16 15 20 20 C 1.35350 * 105.50392 * 180.02562 * 19 18 16 21 21 N 1.35050 * 107.23620 * 0.02562 * 20 19 18 22 22 H 0.96999 * 124.87625 * 179.97438 * 21 20 19 23 23 N 1.28461 * 110.24343 * 359.97438 * 21 20 19 24 24 C 1.38297 * 120.13859 * 0.25278 * 13 12 11 25 25 C 1.38110 * 120.06741 * 359.45057 * 24 13 12 26 26 H 0.96991 * 120.00077 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.03774 * 359.97438 * 11 10 9 28 28 H 1.08004 * 119.96706 * 179.97438 * 12 11 10 29 29 H 1.09005 * 109.47305 * 329.99663 * 14 13 12 30 30 H 1.09003 * 109.46841 * 209.99921 * 14 13 12 31 31 H 1.08006 * 127.25331 * 0.06109 * 19 18 16 32 32 H 1.07998 * 126.38078 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.96732 * 179.70449 * 24 13 12 34 34 H 1.08002 * 120.03331 * 180.27407 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6966 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0016 10 6 2.0702 -3.5045 0.1086 11 6 3.4574 -3.4392 0.0952 12 6 4.2027 -4.5968 0.2037 13 6 3.5691 -5.8201 0.3251 14 6 4.3854 -7.0813 0.4428 15 8 4.6547 -7.3549 1.8431 16 6 5.3796 -8.4555 2.1229 17 8 5.7756 -9.1674 1.2218 18 6 5.6927 -8.7961 3.5244 19 6 6.4383 -9.9122 3.9736 20 6 6.4639 -9.8108 5.3231 21 7 5.7725 -8.6989 5.6540 22 1 5.6304 -8.3833 6.5602 23 7 5.3302 -8.1193 4.5964 24 6 2.1878 -5.8889 0.3330 25 6 1.4369 -4.7343 0.2310 26 1 -0.4850 0.8400 -0.0004 27 1 3.9528 -2.4843 -0.0009 28 1 5.2816 -4.5468 0.1929 29 1 5.3277 -6.9553 -0.0906 30 1 3.8315 -7.9143 0.0098 31 1 6.8920 -10.6823 3.3673 32 1 6.9471 -10.4922 6.0076 33 1 1.6959 -6.8461 0.4232 34 1 0.3583 -4.7883 0.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733441906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:27 Heat of formation + Delta-G solvation = -6.722062 kcal Electronic energy + Delta-G solvation = -20857.787233 eV Core-core repulsion = 17337.703734 eV Total energy + Delta-G solvation = -3520.083500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.94016 -40.06927 -39.00385 -36.93116 -35.92636 -32.45555 -32.26123 -31.13980 -30.42171 -30.17451 -26.32103 -25.25131 -24.04192 -22.09259 -22.01350 -20.61747 -20.40186 -18.83706 -18.04152 -17.49621 -17.11101 -16.46104 -16.32355 -15.51198 -14.70695 -14.58137 -14.39098 -14.04628 -13.72081 -13.65139 -13.51785 -13.03241 -12.74525 -12.69207 -12.23877 -11.70451 -11.36578 -11.23074 -11.04405 -10.78467 -10.73076 -10.54958 -10.48452 -10.38209 -9.80598 -9.56660 -9.37799 -8.87452 -8.21662 -7.29148 -6.49315 -4.07935 1.20650 1.76353 1.95411 2.20546 2.50433 3.04607 3.07315 3.11823 3.15345 3.16325 3.93846 4.23300 4.47927 4.58654 5.00047 5.07956 5.20306 5.25561 5.26387 5.29993 5.35781 5.65998 5.70399 5.81872 5.98104 6.17392 6.37926 6.49746 6.60459 6.64331 6.85621 7.00742 7.19362 7.31789 7.39436 7.45034 7.76294 7.87867 7.95622 8.95908 9.64367 10.68230 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.002877 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.491256 B = 9728.402948 C =10177.539373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.044 4.044 13 C -0.203 4.203 14 C 0.129 3.871 15 O -0.334 6.334 16 C 0.551 3.449 17 O -0.507 6.507 18 C -0.001 4.001 19 C -0.177 4.177 20 C -0.017 4.017 21 N -0.380 5.380 22 H 0.449 0.551 23 N -0.225 5.225 24 C -0.047 4.047 25 C -0.196 4.196 26 H 0.272 0.728 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.188 0.812 33 H 0.114 0.886 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -16.538 9.723 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.109 3.891 11 C -0.257 4.257 12 C -0.062 4.062 13 C -0.204 4.204 14 C 0.056 3.944 15 O -0.250 6.250 16 C 0.393 3.607 17 O -0.394 6.394 18 C -0.159 4.159 19 C -0.204 4.204 20 C -0.161 4.161 21 N -0.095 5.095 22 H 0.294 0.706 23 N -0.063 5.063 24 C -0.066 4.066 25 C -0.215 4.215 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.205 0.795 33 H 0.132 0.868 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.981 -15.553 9.642 21.342 hybrid contribution 0.926 0.215 0.220 0.976 sum 11.907 -15.338 9.862 21.779 Atomic orbital electron populations 1.70027 1.06008 1.27952 1.45461 1.25315 0.95857 0.98918 0.96355 0.85762 0.78715 0.79601 0.79268 1.19425 1.20229 1.19412 1.21323 0.91884 0.80746 1.52982 0.88936 1.83977 1.34490 1.11546 1.77483 1.19436 0.90319 0.88031 0.91344 1.21136 0.93771 0.98848 1.11956 1.20625 0.98451 0.91506 0.95622 1.18852 0.93341 0.92846 1.15330 1.21779 0.99093 0.95987 0.77523 1.86801 1.64660 1.41556 1.31960 1.19590 0.75343 0.79071 0.86713 1.90838 1.51032 1.50914 1.46575 1.20973 1.06369 0.97695 0.90907 1.21805 1.04434 1.00432 0.93739 1.22991 1.02471 0.93547 0.97072 1.43539 1.38282 1.18721 1.08980 0.70585 1.73844 1.17757 1.21743 0.92966 1.20516 0.92618 0.97008 0.96436 1.20191 0.99683 0.90134 1.11519 0.91846 0.85285 0.87288 0.91004 0.90960 0.81611 0.79466 0.86845 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.08 13.67 55.48 0.76 -24.32 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.17 -4.91 9.76 0.04 0.00 -4.91 16 10 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.24 -5.21 9.17 -39.39 -0.36 -5.57 16 12 C -0.04 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.20 -3.67 5.52 -104.58 -0.58 -4.25 16 14 C 0.13 2.03 5.60 36.00 0.20 2.23 16 15 O -0.33 -5.59 10.21 -40.57 -0.41 -6.00 16 16 C 0.55 8.50 7.97 34.55 0.28 8.78 16 17 O -0.51 -8.36 16.72 -19.25 -0.32 -8.68 16 18 C 0.00 -0.01 7.17 -82.78 -0.59 -0.60 16 19 C -0.18 -1.67 10.81 -39.35 -0.43 -2.09 16 20 C -0.02 -0.11 12.02 -17.17 -0.21 -0.31 16 21 N -0.38 -2.81 6.83 30.47 0.21 -2.60 16 22 H 0.45 1.54 8.96 -190.45 -1.71 -0.17 16 23 N -0.23 -2.80 12.24 33.41 0.41 -2.39 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 25 C -0.20 -4.18 9.99 -39.39 -0.39 -4.58 16 26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 28 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.17 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.19 0.30 8.06 -52.49 -0.42 -0.12 16 33 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -34.54 314.11 -6.93 -41.46 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.36 Total: 2.17 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.91 Total: -14.81 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 1.38 Total: -29.31 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.74 Total: -19.59 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.54 -6.93 -41.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733441906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.740 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds