Wall clock time and date at job start Tue Mar 31 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99596 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99449 * 3 2 1 5 5 H 1.48499 * 109.47519 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47306 * 119.99935 * 3 2 1 7 7 C 1.38652 * 120.00647 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00190 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99679 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00391 * 185.05353 * 9 7 2 11 11 C 1.38881 * 120.06278 * 354.47383 * 10 9 7 12 12 C 1.38099 * 119.92826 * 180.02562 * 11 10 9 13 13 C 1.38307 * 120.06873 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.92936 * 179.97438 * 13 12 11 15 15 O 1.45198 * 109.47558 * 90.00034 * 14 13 12 16 16 C 1.34728 * 117.00037 * 180.02562 * 15 14 13 17 17 O 1.21482 * 120.00364 * 359.97438 * 16 15 14 18 18 C 1.47589 * 119.99563 * 179.97438 * 16 15 14 19 19 C 1.41541 * 126.52058 * 179.97438 * 18 16 15 20 20 C 1.35350 * 105.50392 * 180.02562 * 19 18 16 21 21 N 1.35050 * 107.23620 * 0.02562 * 20 19 18 22 22 H 0.96999 * 124.87625 * 179.97438 * 21 20 19 23 23 N 1.28461 * 110.24343 * 359.97438 * 21 20 19 24 24 C 1.38297 * 120.13859 * 0.25278 * 13 12 11 25 25 C 1.38110 * 120.06741 * 359.45057 * 24 13 12 26 26 H 0.96991 * 120.00077 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.03774 * 359.97438 * 11 10 9 28 28 H 1.08004 * 119.96706 * 179.97438 * 12 11 10 29 29 H 1.09005 * 109.47305 * 329.99663 * 14 13 12 30 30 H 1.09003 * 109.46841 * 209.99921 * 14 13 12 31 31 H 1.08006 * 127.25331 * 0.06109 * 19 18 16 32 32 H 1.07998 * 126.38078 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.96732 * 179.70449 * 24 13 12 34 34 H 1.08002 * 120.03331 * 180.27407 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6966 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0016 10 6 2.0702 -3.5045 0.1086 11 6 3.4574 -3.4392 0.0952 12 6 4.2027 -4.5968 0.2037 13 6 3.5691 -5.8201 0.3251 14 6 4.3854 -7.0813 0.4428 15 8 4.6547 -7.3549 1.8431 16 6 5.3796 -8.4555 2.1229 17 8 5.7756 -9.1674 1.2218 18 6 5.6927 -8.7961 3.5244 19 6 6.4383 -9.9122 3.9736 20 6 6.4639 -9.8108 5.3231 21 7 5.7725 -8.6989 5.6540 22 1 5.6304 -8.3833 6.5602 23 7 5.3302 -8.1193 4.5964 24 6 2.1878 -5.8889 0.3330 25 6 1.4369 -4.7343 0.2310 26 1 -0.4850 0.8400 -0.0004 27 1 3.9528 -2.4843 -0.0009 28 1 5.2816 -4.5468 0.1929 29 1 5.3277 -6.9553 -0.0906 30 1 3.8315 -7.9143 0.0098 31 1 6.8920 -10.6823 3.3673 32 1 6.9471 -10.4922 6.0076 33 1 1.6959 -6.8461 0.4232 34 1 0.3583 -4.7883 0.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733441906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:27 Heat of formation + Delta-G solvation = -30.001632 kcal Electronic energy + Delta-G solvation = -20858.796711 eV Core-core repulsion = 17337.703734 eV Total energy + Delta-G solvation = -3521.092977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.64675 -41.32458 -40.72106 -38.55839 -37.30947 -34.37828 -33.11538 -32.11561 -31.85419 -31.64180 -27.93846 -26.90287 -25.23921 -23.69986 -22.75718 -22.20514 -21.46198 -19.90820 -19.46653 -18.91855 -18.56176 -17.64341 -17.53771 -16.53285 -16.37931 -16.10093 -15.96138 -15.57283 -15.19616 -14.68220 -14.62529 -14.35141 -14.19951 -13.98924 -13.80259 -13.51060 -13.03829 -12.63291 -12.45463 -12.28147 -12.15427 -11.99803 -11.83099 -11.69879 -11.21777 -10.81736 -10.57490 -10.20918 -9.84970 -9.07478 -8.49388 -6.18067 0.23842 0.41043 0.54735 1.18115 1.35333 1.44174 1.51616 1.61545 2.06986 2.16798 2.23159 2.81727 3.12848 3.42414 3.45267 3.83747 3.91156 4.00983 4.11363 4.17167 4.29442 4.43058 4.53673 4.70628 4.72721 4.73141 4.97799 5.11079 5.21302 5.26246 5.31968 5.49543 5.64516 5.68080 5.99382 6.10564 6.12605 6.57969 6.89325 6.94802 7.72588 8.73216 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.002877 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.491256 B = 9728.402948 C =10177.539373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.104 0.896 9 O -0.225 6.225 10 C 0.127 3.873 11 C -0.245 4.245 12 C -0.043 4.043 13 C -0.182 4.182 14 C 0.128 3.872 15 O -0.350 6.350 16 C 0.551 3.449 17 O -0.524 6.524 18 C -0.036 4.036 19 C -0.196 4.196 20 C 0.018 3.982 21 N -0.362 5.362 22 H 0.466 0.534 23 N -0.265 5.265 24 C -0.041 4.041 25 C -0.206 4.206 26 H 0.274 0.726 27 H 0.125 0.875 28 H 0.141 0.859 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.176 0.824 32 H 0.242 0.758 33 H 0.149 0.851 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.673 -18.745 11.346 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.493 4.493 8 H 0.121 0.879 9 O -0.131 6.131 10 C 0.075 3.925 11 C -0.264 4.264 12 C -0.061 4.061 13 C -0.183 4.183 14 C 0.056 3.944 15 O -0.265 6.265 16 C 0.394 3.606 17 O -0.412 6.412 18 C -0.192 4.192 19 C -0.223 4.223 20 C -0.126 4.126 21 N -0.080 5.080 22 H 0.315 0.685 23 N -0.105 5.105 24 C -0.059 4.059 25 C -0.225 4.225 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.159 0.841 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.193 0.807 32 H 0.258 0.742 33 H 0.167 0.833 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.765 -17.809 11.281 25.177 hybrid contribution 0.226 0.478 -0.151 0.550 sum 13.992 -17.331 11.130 24.900 Atomic orbital electron populations 1.70172 1.08055 1.29041 1.48324 1.26614 0.96851 1.02779 0.95605 0.84643 0.77417 0.74155 0.79989 1.18046 1.19556 1.18170 1.21830 0.92651 0.81331 1.53512 0.87896 1.83949 1.35977 1.12615 1.80587 1.19976 0.91586 0.88000 0.92895 1.21245 0.93087 0.99956 1.12123 1.20968 0.99996 0.90726 0.94423 1.19246 0.93556 0.93738 1.11768 1.21780 0.99693 0.95076 0.77875 1.86761 1.65353 1.42585 1.31843 1.19974 0.74554 0.78210 0.87826 1.90814 1.51791 1.51259 1.47380 1.20962 1.08649 0.99686 0.89939 1.22114 1.04813 1.00010 0.95378 1.23733 0.99773 0.92509 0.96564 1.43662 1.36936 1.18562 1.08886 0.68535 1.73744 1.19503 1.23258 0.93980 1.20908 0.92922 0.97408 0.94676 1.20444 1.00233 0.90236 1.11557 0.91690 0.85701 0.84134 0.89503 0.89248 0.80651 0.74207 0.83301 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.35 13.67 21.61 0.30 -56.05 16 2 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 3 Si 1.02 42.73 29.55 68.60 2.03 44.76 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.42 -24.35 9.49 67.92 0.64 -23.70 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 9 O -0.23 -13.62 9.76 -22.77 -0.22 -13.84 16 10 C 0.13 6.39 6.65 22.58 0.15 6.54 16 11 C -0.24 -10.87 9.17 22.39 0.21 -10.67 16 12 C -0.04 -1.57 9.69 22.25 0.22 -1.35 16 13 C -0.18 -6.22 5.52 -19.83 -0.11 -6.33 16 14 C 0.13 3.70 5.60 71.24 0.40 4.10 16 15 O -0.35 -11.07 10.21 -56.38 -0.58 -11.65 16 16 C 0.55 16.28 7.97 70.29 0.56 16.84 16 17 O -0.52 -16.58 16.72 19.89 0.33 -16.24 16 18 C -0.04 -0.88 7.17 42.42 0.30 -0.58 16 19 C -0.20 -3.16 10.81 22.42 0.24 -2.92 16 20 C 0.02 0.15 12.02 83.53 1.00 1.15 16 21 N -0.36 -4.20 6.83 -57.51 -0.39 -4.60 16 22 H 0.47 1.61 8.96 -220.00 -1.97 -0.36 16 23 N -0.27 -6.12 12.24 -48.22 -0.59 -6.71 16 24 C -0.04 -1.46 9.69 22.25 0.22 -1.24 16 25 C -0.21 -8.92 9.99 22.39 0.22 -8.69 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 27 H 0.13 5.55 5.64 -2.91 -0.02 5.53 16 28 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 29 H 0.09 2.28 8.08 -2.38 -0.02 2.26 16 30 H 0.09 2.31 8.08 -2.39 -0.02 2.29 16 31 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.24 -0.80 8.06 -2.91 -0.02 -0.82 16 33 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -80.76 314.11 4.59 -76.17 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.81 Total: 15.73 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 4.52 Total: -27.56 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.69 Total: -67.36 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.47 Total: -41.74 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -80.76 4.59 -76.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733441906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.172 kcal (2) G-P(sol) polarization free energy of solvation -80.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds