Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86793 * 120.00332 * 2 1 4 4 H 1.48494 * 109.47663 * 269.99935 * 3 2 1 5 5 H 1.48499 * 109.47029 * 30.00017 * 3 2 1 6 6 H 1.48504 * 109.47052 * 149.99864 * 3 2 1 7 7 C 1.39021 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00215 * 192.43184 * 7 2 1 9 9 N 1.36913 * 120.00025 * 12.43202 * 7 2 1 10 10 C 1.46506 * 119.99691 * 11.34806 * 9 7 2 11 11 C 1.50693 * 109.47354 * 272.64680 * 10 9 7 12 12 O 1.20833 * 119.99756 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00152 * 180.02562 * 11 10 9 14 14 C 1.34775 * 120.00483 * 191.34696 * 9 7 2 15 15 O 1.21619 * 119.99600 * 4.50567 * 14 9 7 16 16 C 1.47545 * 120.00334 * 184.51375 * 14 9 7 17 17 C 1.40256 * 119.98157 * 128.51807 * 16 14 9 18 18 C 1.36307 * 120.65955 * 179.97438 * 17 16 14 19 19 C 1.39381 * 120.24978 * 359.97438 * 18 17 16 20 20 N 1.37407 * 133.24186 * 180.02562 * 19 18 17 21 21 H 0.97004 * 125.00656 * 359.96386 * 20 19 18 22 22 C 1.36858 * 109.98069 * 180.23260 * 20 19 18 23 23 C 1.34192 * 109.96135 * 359.60899 * 22 20 19 24 24 C 1.40877 * 119.65029 * 0.02562 * 19 18 17 25 25 C 1.39226 * 119.97763 * 308.49530 * 16 14 9 26 26 H 0.97006 * 120.00022 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47246 * 32.64981 * 10 9 7 28 28 H 1.09000 * 109.46997 * 152.64620 * 10 9 7 29 29 H 0.96704 * 116.99453 * 180.02562 * 13 11 10 30 30 H 1.07999 * 119.66990 * 359.95951 * 17 16 14 31 31 H 1.08001 * 119.87294 * 180.02562 * 18 17 16 32 32 H 1.07996 * 125.01768 * 179.73640 * 22 20 19 33 33 H 1.07999 * 126.54219 * 180.12802 * 23 22 20 34 34 H 1.08002 * 120.30529 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 2.4954 2.0464 -1.4000 5 1 1.4453 2.6526 0.7000 6 1 3.5454 1.4400 0.7001 7 6 2.0089 -1.2040 0.0005 8 1 3.0698 -1.2149 0.2019 9 7 1.3483 -2.3759 -0.2542 10 6 -0.0232 -2.3468 -0.7685 11 6 -0.9908 -2.2791 0.3847 12 8 -0.5772 -2.2579 1.5199 13 8 -2.3121 -2.2435 0.1510 14 6 1.9598 -3.5562 -0.0319 15 8 3.0666 -3.5823 0.4715 16 6 1.2865 -4.8166 -0.3993 17 6 1.9564 -5.7659 -1.1850 18 6 1.3478 -6.9351 -1.5321 19 6 0.0472 -7.2025 -1.1082 20 7 -0.8037 -8.2653 -1.2941 21 1 -0.5935 -9.0641 -1.8027 22 6 -1.9936 -8.0280 -0.6611 23 6 -1.9565 -6.8347 -0.0482 24 6 -0.6367 -6.2573 -0.3186 25 6 -0.0133 -5.0631 0.0345 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1542 -1.4714 -1.4046 28 1 -0.2126 -3.2495 -1.3493 29 1 -2.8934 -2.2000 0.9227 30 1 2.9644 -5.5684 -1.5185 31 1 1.8756 -7.6573 -2.1373 32 1 -2.8371 -8.7024 -0.6539 33 1 -2.7494 -6.3839 0.5301 34 1 -0.5332 -4.3351 0.6396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739085813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = -40.174727 kcal Electronic energy + Delta-G solvation = -23027.823062 eV Core-core repulsion = 19506.288946 eV Total energy + Delta-G solvation = -3521.534116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06317 -39.50505 -38.18475 -36.14179 -35.15254 -34.38764 -32.06669 -31.49681 -29.34128 -28.60149 -27.58603 -25.06314 -22.90308 -21.90221 -21.01676 -20.65375 -19.10495 -17.90613 -17.07988 -16.93921 -16.44856 -15.81851 -15.53725 -14.92345 -14.49944 -14.34198 -14.21054 -13.97040 -13.53794 -13.07622 -13.01334 -12.79236 -12.40078 -11.98855 -11.80726 -11.60813 -11.51301 -11.15657 -10.88964 -10.63055 -10.39255 -10.30315 -10.22863 -9.57921 -9.53745 -9.04025 -8.60998 -7.98640 -7.91969 -7.51481 -6.43814 -3.89675 1.36203 1.70674 2.86482 3.15283 3.21449 3.24274 3.30594 3.52457 3.73577 4.05044 4.19089 4.36405 4.76262 4.89877 4.96892 5.18438 5.28372 5.50026 5.51302 5.73132 5.80241 6.00000 6.04830 6.15000 6.34832 6.57869 6.62263 6.78307 6.81348 6.91123 6.96888 7.33394 7.51062 7.60361 7.61673 7.96010 8.36993 9.07066 9.13829 9.30848 9.83553 10.62527 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.005783 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.907019 B = 4840.593529 C = 5700.114440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.290 4.290 8 H 0.111 0.889 9 N -0.424 5.424 10 C 0.143 3.857 11 C 0.502 3.498 12 O -0.514 6.514 13 O -0.533 6.533 14 C 0.496 3.504 15 O -0.574 6.574 16 C -0.123 4.123 17 C -0.054 4.054 18 C -0.140 4.140 19 C 0.100 3.900 20 N -0.598 5.598 21 H 0.412 0.588 22 C 0.038 3.962 23 C -0.194 4.194 24 C -0.114 4.114 25 C -0.050 4.050 26 H 0.273 0.727 27 H 0.134 0.866 28 H 0.077 0.923 29 H 0.390 0.610 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 -12.318 -5.870 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.417 4.417 8 H 0.128 0.872 9 N -0.142 5.142 10 C 0.017 3.983 11 C 0.343 3.657 12 O -0.401 6.401 13 O -0.343 6.343 14 C 0.285 3.715 15 O -0.458 6.458 16 C -0.128 4.128 17 C -0.074 4.074 18 C -0.161 4.161 19 C -0.008 4.008 20 N -0.201 5.201 21 H 0.248 0.752 22 C -0.087 4.087 23 C -0.220 4.220 24 C -0.119 4.119 25 C -0.070 4.070 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.095 0.905 29 H 0.245 0.755 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.185 0.815 33 H 0.163 0.837 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.330 -12.259 -5.693 14.925 hybrid contribution -0.287 0.584 0.479 0.808 sum -6.617 -11.675 -5.214 14.397 Atomic orbital electron populations 1.69512 1.06083 1.27826 1.50214 1.25260 0.95552 1.00092 0.96560 0.85676 0.79217 0.80052 0.78294 1.20250 1.20977 1.19316 1.19849 0.94715 0.82033 1.45105 0.87166 1.43375 1.10207 1.05299 1.55323 1.20915 0.80791 1.04007 0.92581 1.23534 0.80565 0.69976 0.91595 1.90619 1.78329 1.46381 1.24746 1.84537 1.19779 1.87039 1.42985 1.17848 0.87241 0.82709 0.83694 1.90629 1.21382 1.86541 1.47250 1.19956 0.94263 0.97046 1.01510 1.20558 0.99352 0.91784 0.95708 1.19596 0.92268 0.98904 1.05289 1.18344 0.92802 0.88881 1.00726 1.41673 1.12586 1.17967 1.47905 0.75170 1.21702 0.89300 0.98778 0.98944 1.21733 0.96997 0.96102 1.07120 1.19102 0.95100 0.95169 1.02488 1.21004 0.93242 0.95290 0.97416 0.91617 0.84841 0.90501 0.75450 0.85122 0.86224 0.81533 0.83701 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.38 8.21 55.50 0.46 -22.93 16 2 C 0.03 0.68 5.18 -17.46 -0.09 0.59 16 3 Si 0.94 20.85 29.57 -169.99 -5.03 15.82 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.29 -8.10 9.43 -14.99 -0.14 -8.24 16 8 H 0.11 3.20 7.27 -52.49 -0.38 2.82 16 9 N -0.42 -11.13 2.12 -117.27 -0.25 -11.38 16 10 C 0.14 3.31 4.80 -5.19 -0.02 3.29 16 11 C 0.50 11.61 3.83 36.00 0.14 11.75 16 12 O -0.51 -13.82 16.19 -18.76 -0.30 -14.12 16 13 O -0.53 -10.05 13.42 -39.26 -0.53 -10.58 16 14 C 0.50 12.84 7.14 -12.47 -0.09 12.75 16 15 O -0.57 -16.66 16.68 5.26 0.09 -16.57 16 16 C -0.12 -2.63 4.81 -104.98 -0.50 -3.13 16 17 C -0.05 -0.96 9.65 -39.52 -0.38 -1.34 16 18 C -0.14 -2.05 10.00 -39.85 -0.40 -2.45 16 19 C 0.10 1.48 7.27 -83.94 -0.61 0.87 16 20 N -0.60 -6.49 6.05 -10.61 -0.06 -6.56 16 21 H 0.41 2.97 8.96 -40.82 -0.37 2.61 16 22 C 0.04 0.40 11.81 -16.73 -0.20 0.20 16 23 C -0.19 -2.64 11.09 -37.65 -0.42 -3.06 16 24 C -0.11 -1.94 6.36 -105.16 -0.67 -2.61 16 25 C -0.05 -1.00 7.70 -38.83 -0.30 -1.30 16 26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.13 3.18 6.28 -51.93 -0.33 2.85 16 28 H 0.08 1.58 5.79 -51.93 -0.30 1.28 16 29 H 0.39 5.67 9.10 45.56 0.41 6.09 16 30 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.13 2.71 4.40 -52.49 -0.23 2.48 16 LS Contribution 294.99 15.07 4.45 4.45 Total: -1.00 -35.44 294.99 -6.88 -42.33 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -2.02 Total: 12.23 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -3.69 Total: 7.31 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.14 Total: -40.86 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.74 Total: -41.27 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.44 -6.88 -42.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739085813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.151 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds