Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86793 * 120.00332 * 2 1 4 4 H 1.48494 * 109.47663 * 269.99935 * 3 2 1 5 5 H 1.48499 * 109.47029 * 30.00017 * 3 2 1 6 6 H 1.48504 * 109.47052 * 149.99864 * 3 2 1 7 7 C 1.39021 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00215 * 192.43184 * 7 2 1 9 9 N 1.36913 * 120.00025 * 12.43202 * 7 2 1 10 10 C 1.46506 * 119.99691 * 11.34806 * 9 7 2 11 11 C 1.50693 * 109.47354 * 272.64680 * 10 9 7 12 12 O 1.20833 * 119.99756 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00152 * 180.02562 * 11 10 9 14 14 C 1.34775 * 120.00483 * 191.34696 * 9 7 2 15 15 O 1.21619 * 119.99600 * 4.50567 * 14 9 7 16 16 C 1.47545 * 120.00334 * 184.51375 * 14 9 7 17 17 C 1.40256 * 119.98157 * 128.51807 * 16 14 9 18 18 C 1.36307 * 120.65955 * 179.97438 * 17 16 14 19 19 C 1.39381 * 120.24978 * 359.97438 * 18 17 16 20 20 N 1.37407 * 133.24186 * 180.02562 * 19 18 17 21 21 H 0.97004 * 125.00656 * 359.96386 * 20 19 18 22 22 C 1.36858 * 109.98069 * 180.23260 * 20 19 18 23 23 C 1.34192 * 109.96135 * 359.60899 * 22 20 19 24 24 C 1.40877 * 119.65029 * 0.02562 * 19 18 17 25 25 C 1.39226 * 119.97763 * 308.49530 * 16 14 9 26 26 H 0.97006 * 120.00022 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47246 * 32.64981 * 10 9 7 28 28 H 1.09000 * 109.46997 * 152.64620 * 10 9 7 29 29 H 0.96704 * 116.99453 * 180.02562 * 13 11 10 30 30 H 1.07999 * 119.66990 * 359.95951 * 17 16 14 31 31 H 1.08001 * 119.87294 * 180.02562 * 18 17 16 32 32 H 1.07996 * 125.01768 * 179.73640 * 22 20 19 33 33 H 1.07999 * 126.54219 * 180.12802 * 23 22 20 34 34 H 1.08002 * 120.30529 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 2.4954 2.0464 -1.4000 5 1 1.4453 2.6526 0.7000 6 1 3.5454 1.4400 0.7001 7 6 2.0089 -1.2040 0.0005 8 1 3.0698 -1.2149 0.2019 9 7 1.3483 -2.3759 -0.2542 10 6 -0.0232 -2.3468 -0.7685 11 6 -0.9908 -2.2791 0.3847 12 8 -0.5772 -2.2579 1.5199 13 8 -2.3121 -2.2435 0.1510 14 6 1.9598 -3.5562 -0.0319 15 8 3.0666 -3.5823 0.4715 16 6 1.2865 -4.8166 -0.3993 17 6 1.9564 -5.7659 -1.1850 18 6 1.3478 -6.9351 -1.5321 19 6 0.0472 -7.2025 -1.1082 20 7 -0.8037 -8.2653 -1.2941 21 1 -0.5935 -9.0641 -1.8027 22 6 -1.9936 -8.0280 -0.6611 23 6 -1.9565 -6.8347 -0.0482 24 6 -0.6367 -6.2573 -0.3186 25 6 -0.0133 -5.0631 0.0345 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1542 -1.4714 -1.4046 28 1 -0.2126 -3.2495 -1.3493 29 1 -2.8934 -2.2000 0.9227 30 1 2.9644 -5.5684 -1.5185 31 1 1.8756 -7.6573 -2.1373 32 1 -2.8371 -8.7024 -0.6539 33 1 -2.7494 -6.3839 0.5301 34 1 -0.5332 -4.3351 0.6396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739085813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = -65.711932 kcal Electronic energy + Delta-G solvation = -23028.930438 eV Core-core repulsion = 19506.288946 eV Total energy + Delta-G solvation = -3522.641492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.24554 -41.28017 -40.01477 -37.54767 -37.01087 -36.33362 -33.86111 -32.89605 -30.73377 -29.80492 -29.40277 -26.98100 -24.33217 -23.30361 -22.75639 -21.75579 -20.71237 -19.16317 -18.97080 -18.75256 -18.14801 -17.40019 -17.12205 -16.74581 -16.23936 -15.98134 -15.64255 -15.30565 -14.99709 -14.66535 -14.56121 -14.00028 -13.68683 -13.64772 -13.49372 -13.36534 -13.27807 -12.75989 -12.59073 -12.28676 -12.16769 -12.14192 -11.81523 -11.54099 -11.00593 -10.74278 -10.59728 -9.99972 -9.16842 -8.66841 -8.45468 -6.00758 0.07394 0.37681 1.37013 1.40314 1.53854 1.70917 1.85934 1.92785 2.21136 2.28125 2.51517 2.82552 2.92766 3.18510 3.73743 3.83248 3.99892 4.24449 4.27963 4.36056 4.43412 4.74675 4.79239 4.81851 4.93464 4.97031 5.12745 5.34556 5.40162 5.54395 5.66540 5.77024 5.93845 5.96204 6.15155 6.34514 6.79337 7.02448 7.23846 7.45601 7.84553 8.58582 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.005783 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.907019 B = 4840.593529 C = 5700.114440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.004 4.004 3 Si 1.006 2.994 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.333 4.333 8 H 0.083 0.917 9 N -0.434 5.434 10 C 0.147 3.853 11 C 0.514 3.486 12 O -0.558 6.558 13 O -0.516 6.516 14 C 0.484 3.516 15 O -0.625 6.625 16 C -0.151 4.151 17 C -0.076 4.076 18 C -0.113 4.113 19 C 0.097 3.903 20 N -0.577 5.577 21 H 0.435 0.565 22 C 0.081 3.919 23 C -0.234 4.234 24 C -0.134 4.134 25 C -0.066 4.066 26 H 0.278 0.722 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.412 0.588 30 H 0.130 0.870 31 H 0.164 0.836 32 H 0.222 0.778 33 H 0.153 0.847 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 -14.755 -7.545 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.204 4.204 3 Si 0.828 3.172 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.461 4.461 8 H 0.101 0.899 9 N -0.151 5.151 10 C 0.022 3.978 11 C 0.357 3.643 12 O -0.449 6.449 13 O -0.328 6.328 14 C 0.275 3.725 15 O -0.513 6.513 16 C -0.155 4.155 17 C -0.096 4.096 18 C -0.133 4.133 19 C -0.012 4.012 20 N -0.181 5.181 21 H 0.276 0.724 22 C -0.046 4.046 23 C -0.258 4.258 24 C -0.139 4.139 25 C -0.086 4.086 26 H 0.089 0.911 27 H 0.144 0.856 28 H 0.118 0.882 29 H 0.271 0.729 30 H 0.148 0.852 31 H 0.182 0.818 32 H 0.239 0.761 33 H 0.171 0.829 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.710 -14.731 -7.414 18.650 hybrid contribution 0.225 1.162 0.987 1.541 sum -8.485 -13.569 -6.427 17.246 Atomic orbital electron populations 1.69595 1.06787 1.28795 1.49023 1.26086 0.96534 1.02590 0.95140 0.84749 0.77456 0.75842 0.79117 1.18191 1.20062 1.20303 1.19800 0.94203 0.83822 1.48244 0.89874 1.43530 1.11309 1.05132 1.55155 1.20912 0.79666 1.04607 0.92643 1.23357 0.81586 0.68668 0.90641 1.90600 1.79376 1.48605 1.26308 1.84451 1.18187 1.86161 1.44036 1.18698 0.86853 0.84222 0.82714 1.90551 1.23598 1.87604 1.49536 1.19682 0.95327 0.95912 1.04617 1.20585 0.99625 0.92710 0.96675 1.19891 0.92117 0.97798 1.03493 1.18416 0.93066 0.89646 1.00057 1.41746 1.11827 1.17532 1.47025 0.72385 1.22487 0.89594 0.97636 0.94833 1.21988 0.96198 0.97844 1.09807 1.19417 0.97087 0.94530 1.02820 1.20769 0.92890 0.96616 0.98301 0.91119 0.85648 0.88241 0.72888 0.85238 0.81841 0.76121 0.82918 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.91 8.21 21.68 0.18 -47.73 16 2 C 0.00 -0.21 5.18 84.95 0.44 0.23 16 3 Si 1.01 43.61 29.57 68.60 2.03 45.64 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.33 -19.82 9.43 84.09 0.79 -19.03 16 8 H 0.08 5.25 7.27 -2.91 -0.02 5.23 16 9 N -0.43 -24.29 2.12 -643.20 -1.36 -25.65 16 10 C 0.15 7.09 4.80 85.63 0.41 7.50 16 11 C 0.51 24.47 3.83 71.23 0.27 24.74 16 12 O -0.56 -31.36 16.19 21.94 0.36 -31.01 16 13 O -0.52 -19.29 13.42 -51.42 -0.69 -19.98 16 14 C 0.48 26.97 7.14 86.70 0.62 27.59 16 15 O -0.62 -39.37 16.68 -4.09 -0.07 -39.43 16 16 C -0.15 -6.77 4.81 -20.09 -0.10 -6.87 16 17 C -0.08 -2.74 9.65 22.31 0.22 -2.52 16 18 C -0.11 -3.02 10.00 22.09 0.22 -2.80 16 19 C 0.10 2.57 7.27 39.19 0.28 2.86 16 20 N -0.58 -9.36 6.05 -187.47 -1.13 -10.49 16 21 H 0.44 3.44 8.96 -92.71 -0.83 2.61 16 22 C 0.08 1.23 11.81 82.99 0.98 2.21 16 23 C -0.23 -5.68 11.09 23.52 0.26 -5.42 16 24 C -0.13 -4.37 6.36 -20.21 -0.13 -4.50 16 25 C -0.07 -2.74 7.70 22.75 0.18 -2.56 16 26 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 27 H 0.13 6.17 6.28 -2.39 -0.01 6.16 16 28 H 0.10 4.26 5.79 -2.39 -0.01 4.25 16 29 H 0.41 11.60 9.10 -74.05 -0.67 10.93 16 30 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 31 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.22 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 34 H 0.10 4.58 4.40 -2.91 -0.01 4.57 16 Total: -1.00 -84.21 294.99 3.44 -80.77 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.31 Total: 26.45 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 4.45 Total: 21.43 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.32 Total: -83.87 kcal Atomic # 8 Polarization: -90.02 SS G_CDS: -0.40 Total: -90.42 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -84.21 3.44 -80.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739085813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.055 kcal (2) G-P(sol) polarization free energy of solvation -84.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds