Wall clock time and date at job start Tue Mar 31 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86796 * 120.00334 * 2 1 4 4 H 1.48498 * 109.47023 * 269.99785 * 3 2 1 5 5 H 1.48499 * 109.47153 * 29.99355 * 3 2 1 6 6 H 1.48499 * 109.47232 * 149.99656 * 3 2 1 7 7 C 1.39032 * 119.99423 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99667 * 185.16452 * 7 2 1 9 9 N 1.36875 * 120.00658 * 5.16323 * 7 2 1 10 10 C 1.46507 * 119.99621 * 34.07213 * 9 7 2 11 11 C 1.50700 * 109.47361 * 262.86132 * 10 9 7 12 12 O 1.20820 * 119.99982 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99751 * 179.97438 * 11 10 9 14 14 C 1.34776 * 120.00437 * 214.07859 * 9 7 2 15 15 O 1.21632 * 119.99935 * 186.13174 * 14 9 7 16 16 C 1.47454 * 119.99834 * 6.13420 * 14 9 7 17 17 C 1.40308 * 119.84252 * 26.58780 * 16 14 9 18 18 C 1.36169 * 120.37456 * 180.30173 * 17 16 14 19 19 C 1.39941 * 119.96649 * 359.68759 * 18 17 16 20 20 C 1.46251 * 133.82511 * 180.02562 * 19 18 17 21 21 C 1.34482 * 107.03164 * 179.97438 * 20 19 18 22 22 N 1.36561 * 109.97610 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.06714 * 179.97438 * 22 21 20 24 24 C 1.37830 * 109.85866 * 359.97438 * 22 21 20 25 25 C 1.38667 * 133.36661 * 179.97438 * 24 22 21 26 26 H 0.97005 * 120.00152 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47065 * 22.86770 * 10 9 7 28 28 H 1.09003 * 109.46537 * 142.86097 * 10 9 7 29 29 H 0.96693 * 116.99456 * 180.02562 * 13 11 10 30 30 H 1.08003 * 119.80639 * 359.97438 * 17 16 14 31 31 H 1.07997 * 120.01790 * 179.70897 * 18 17 16 32 32 H 1.07995 * 126.48036 * 359.97438 * 20 19 18 33 33 H 1.08001 * 125.00413 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.16801 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 2.4954 2.0463 -1.4001 5 1 1.4453 2.6527 0.6999 6 1 3.5453 1.4401 0.7001 7 6 2.0088 -1.2041 0.0005 8 1 3.0855 -1.2060 0.0847 9 7 1.3286 -2.3872 -0.1056 10 6 0.1116 -2.4620 -0.9179 11 6 -1.0959 -2.3150 -0.0284 12 8 -0.9546 -2.1628 1.1618 13 8 -2.3285 -2.3521 -0.5587 14 6 1.7782 -3.4831 0.5372 15 8 1.2401 -4.5586 0.3551 16 6 2.9225 -3.3783 1.4613 17 6 3.1908 -2.1608 2.1051 18 6 4.2482 -2.0502 2.9559 19 6 5.0702 -3.1568 3.1969 20 6 6.2532 -3.3778 4.0278 21 6 6.6201 -4.6604 3.8577 22 7 5.7685 -5.2776 2.9868 23 1 5.8315 -6.2047 2.7083 24 6 4.8060 -4.3869 2.5625 25 6 3.7272 -4.4912 1.6976 26 1 -0.4850 0.8401 -0.0004 27 1 0.1183 -1.6609 -1.6570 28 1 0.0732 -3.4253 -1.4266 29 1 -3.0720 -2.2531 0.0516 30 1 2.5581 -1.3052 1.9207 31 1 4.4522 -1.1091 3.4447 32 1 6.7400 -2.6488 4.6586 33 1 7.4634 -5.1327 4.3397 34 1 3.5154 -5.4285 1.2046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:56 Heat of formation + Delta-G solvation = -45.303555 kcal Electronic energy + Delta-G solvation = -22754.316336 eV Core-core repulsion = 19232.559817 eV Total energy + Delta-G solvation = -3521.756519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80398 -39.35631 -38.21109 -35.86664 -35.17085 -34.47377 -31.64386 -31.47749 -29.43426 -28.63317 -27.28419 -25.01210 -22.78970 -21.73283 -20.64838 -20.36435 -19.30772 -17.93624 -17.11050 -16.85424 -16.26618 -15.55251 -15.13397 -14.62583 -14.40393 -14.27814 -14.09607 -13.78029 -13.54658 -13.20666 -13.05138 -12.68244 -12.48292 -11.81032 -11.67819 -11.50416 -11.12244 -11.09728 -10.95633 -10.62735 -10.44696 -10.39045 -10.15896 -9.39869 -9.31780 -9.06089 -8.70609 -7.85490 -7.65823 -7.28474 -6.54277 -4.15349 1.42696 2.17643 2.93076 3.09356 3.16620 3.19769 3.38648 3.72497 3.77409 4.03159 4.30085 4.59193 4.72002 5.00715 5.06798 5.27205 5.55668 5.75955 5.91146 5.99742 6.06581 6.26257 6.34010 6.44291 6.53789 6.58821 6.66783 7.08268 7.09891 7.22042 7.31476 7.34097 7.59695 7.69654 7.72180 7.79940 8.21615 8.90730 9.23869 9.32199 9.71056 10.52757 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.006148 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.074699 B = 4553.456136 C = 5715.398540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.042 3.958 3 Si 0.924 3.076 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.336 4.336 8 H 0.106 0.894 9 N -0.423 5.423 10 C 0.158 3.842 11 C 0.497 3.503 12 O -0.501 6.501 13 O -0.538 6.538 14 C 0.518 3.482 15 O -0.600 6.600 16 C -0.071 4.071 17 C -0.092 4.092 18 C -0.103 4.103 19 C -0.098 4.098 20 C -0.212 4.212 21 C 0.042 3.958 22 N -0.598 5.598 23 H 0.411 0.589 24 C 0.075 3.925 25 C -0.090 4.090 26 H 0.274 0.726 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.390 0.610 30 H 0.167 0.833 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 -3.388 2.575 8.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.750 3.250 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.463 4.463 8 H 0.124 0.876 9 N -0.140 5.140 10 C 0.033 3.967 11 C 0.337 3.663 12 O -0.385 6.385 13 O -0.350 6.350 14 C 0.309 3.691 15 O -0.486 6.486 16 C -0.075 4.075 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.103 4.103 20 C -0.238 4.238 21 C -0.085 4.085 22 N -0.201 5.201 23 H 0.247 0.753 24 C -0.030 4.030 25 C -0.112 4.112 26 H 0.085 0.915 27 H 0.133 0.867 28 H 0.100 0.900 29 H 0.246 0.754 30 H 0.184 0.816 31 H 0.136 0.864 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.637 -3.855 2.499 8.913 hybrid contribution -0.103 0.683 0.408 0.802 sum 7.535 -3.172 2.907 8.677 Atomic orbital electron populations 1.69603 1.06202 1.28148 1.46161 1.25448 0.95434 0.99993 0.95607 0.85944 0.79577 0.80780 0.78692 1.20093 1.20718 1.18751 1.19688 0.92427 0.82192 1.52019 0.87631 1.43025 1.21170 1.09196 1.40658 1.20313 0.81636 1.02558 0.92242 1.23499 0.83140 0.70973 0.88647 1.90556 1.85850 1.44367 1.17775 1.84509 1.17340 1.86646 1.46468 1.18105 0.85321 0.84361 0.81325 1.90625 1.62345 1.28514 1.67137 1.19581 0.95783 0.93395 0.98779 1.21935 0.96799 0.98738 0.93593 1.20249 0.95628 0.96879 0.99438 1.19355 0.97525 0.93445 0.99971 1.21658 0.99664 0.96170 1.06299 1.21684 0.96607 0.93938 0.96257 1.41665 1.25405 1.12191 1.40844 0.75273 1.18046 0.93689 0.90185 1.01112 1.20004 0.93335 0.99077 0.98788 0.91491 0.86732 0.89959 0.75400 0.81615 0.86386 0.84144 0.81880 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.80 8.72 55.50 0.48 -21.32 16 2 C 0.04 0.99 5.12 -17.45 -0.09 0.91 16 3 Si 0.92 18.73 29.56 -169.99 -5.02 13.71 16 4 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.34 -8.14 6.11 -15.01 -0.09 -8.23 16 8 H 0.11 2.48 6.21 -52.49 -0.33 2.15 16 9 N -0.42 -10.55 2.15 -117.30 -0.25 -10.80 16 10 C 0.16 3.72 5.18 -5.19 -0.03 3.69 16 11 C 0.50 12.01 6.37 36.01 0.23 12.24 16 12 O -0.50 -13.80 16.05 -18.75 -0.30 -14.10 16 13 O -0.54 -10.72 13.42 -39.26 -0.53 -11.25 16 14 C 0.52 13.12 7.14 -12.51 -0.09 13.03 16 15 O -0.60 -16.22 16.27 5.25 0.09 -16.13 16 16 C -0.07 -1.61 5.53 -104.95 -0.58 -2.19 16 17 C -0.09 -1.97 7.70 -39.55 -0.30 -2.27 16 18 C -0.10 -1.93 10.03 -39.69 -0.40 -2.33 16 19 C -0.10 -1.74 6.37 -105.03 -0.67 -2.41 16 20 C -0.21 -2.99 11.08 -37.69 -0.42 -3.40 16 21 C 0.04 0.50 11.81 -16.77 -0.20 0.30 16 22 N -0.60 -7.92 6.07 -10.68 -0.06 -7.98 16 23 H 0.41 4.11 8.96 -40.82 -0.37 3.74 16 24 C 0.07 1.32 7.26 -84.00 -0.61 0.71 16 25 C -0.09 -1.79 9.60 -39.01 -0.37 -2.17 16 26 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 27 H 0.11 2.62 7.09 -51.93 -0.37 2.26 16 28 H 0.08 1.82 7.56 -51.93 -0.39 1.43 16 29 H 0.39 6.08 9.10 45.56 0.41 6.50 16 30 H 0.17 3.85 5.30 -52.48 -0.28 3.57 16 31 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 2.33 7.84 -52.49 -0.41 1.92 16 LS Contribution 297.42 15.07 4.48 4.48 Total: -1.00 -32.59 297.42 -6.87 -39.46 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -2.13 Total: 16.07 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -3.62 Total: 7.87 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.17 Total: -40.10 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.74 Total: -41.48 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.59 -6.87 -39.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.847 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds