Wall clock time and date at job start Tue Mar 31 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86796 * 120.00334 * 2 1 4 4 H 1.48498 * 109.47023 * 269.99785 * 3 2 1 5 5 H 1.48499 * 109.47153 * 29.99355 * 3 2 1 6 6 H 1.48499 * 109.47232 * 149.99656 * 3 2 1 7 7 C 1.39032 * 119.99423 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99667 * 185.16452 * 7 2 1 9 9 N 1.36875 * 120.00658 * 5.16323 * 7 2 1 10 10 C 1.46507 * 119.99621 * 34.07213 * 9 7 2 11 11 C 1.50700 * 109.47361 * 262.86132 * 10 9 7 12 12 O 1.20820 * 119.99982 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99751 * 179.97438 * 11 10 9 14 14 C 1.34776 * 120.00437 * 214.07859 * 9 7 2 15 15 O 1.21632 * 119.99935 * 186.13174 * 14 9 7 16 16 C 1.47454 * 119.99834 * 6.13420 * 14 9 7 17 17 C 1.40308 * 119.84252 * 26.58780 * 16 14 9 18 18 C 1.36169 * 120.37456 * 180.30173 * 17 16 14 19 19 C 1.39941 * 119.96649 * 359.68759 * 18 17 16 20 20 C 1.46251 * 133.82511 * 180.02562 * 19 18 17 21 21 C 1.34482 * 107.03164 * 179.97438 * 20 19 18 22 22 N 1.36561 * 109.97610 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.06714 * 179.97438 * 22 21 20 24 24 C 1.37830 * 109.85866 * 359.97438 * 22 21 20 25 25 C 1.38667 * 133.36661 * 179.97438 * 24 22 21 26 26 H 0.97005 * 120.00152 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47065 * 22.86770 * 10 9 7 28 28 H 1.09003 * 109.46537 * 142.86097 * 10 9 7 29 29 H 0.96693 * 116.99456 * 180.02562 * 13 11 10 30 30 H 1.08003 * 119.80639 * 359.97438 * 17 16 14 31 31 H 1.07997 * 120.01790 * 179.70897 * 18 17 16 32 32 H 1.07995 * 126.48036 * 359.97438 * 20 19 18 33 33 H 1.08001 * 125.00413 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.16801 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 2.4954 2.0463 -1.4001 5 1 1.4453 2.6527 0.6999 6 1 3.5453 1.4401 0.7001 7 6 2.0088 -1.2041 0.0005 8 1 3.0855 -1.2060 0.0847 9 7 1.3286 -2.3872 -0.1056 10 6 0.1116 -2.4620 -0.9179 11 6 -1.0959 -2.3150 -0.0284 12 8 -0.9546 -2.1628 1.1618 13 8 -2.3285 -2.3521 -0.5587 14 6 1.7782 -3.4831 0.5372 15 8 1.2401 -4.5586 0.3551 16 6 2.9225 -3.3783 1.4613 17 6 3.1908 -2.1608 2.1051 18 6 4.2482 -2.0502 2.9559 19 6 5.0702 -3.1568 3.1969 20 6 6.2532 -3.3778 4.0278 21 6 6.6201 -4.6604 3.8577 22 7 5.7685 -5.2776 2.9868 23 1 5.8315 -6.2047 2.7083 24 6 4.8060 -4.3869 2.5625 25 6 3.7272 -4.4912 1.6976 26 1 -0.4850 0.8401 -0.0004 27 1 0.1183 -1.6609 -1.6570 28 1 0.0732 -3.4253 -1.4266 29 1 -3.0720 -2.2531 0.0516 30 1 2.5581 -1.3052 1.9207 31 1 4.4522 -1.1091 3.4447 32 1 6.7400 -2.6488 4.6586 33 1 7.4634 -5.1327 4.3397 34 1 3.5154 -5.4285 1.2046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:55 Heat of formation + Delta-G solvation = -67.419350 kcal Electronic energy + Delta-G solvation = -22755.275349 eV Core-core repulsion = 19232.559817 eV Total energy + Delta-G solvation = -3522.715531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.09444 -41.18389 -40.02503 -37.35662 -37.04319 -36.36417 -33.52384 -32.81085 -30.99975 -29.98037 -28.93514 -26.86532 -24.31677 -23.21969 -22.39077 -21.49507 -21.09876 -19.47325 -18.82844 -18.53068 -17.82713 -17.38311 -16.81022 -16.37274 -16.15760 -16.04286 -15.55405 -15.26523 -14.98342 -14.71197 -14.60180 -14.08994 -13.83273 -13.63857 -13.35017 -13.22054 -12.84002 -12.79306 -12.43806 -12.24382 -12.10465 -12.04169 -11.86932 -11.32867 -10.93652 -10.65640 -10.56927 -9.75510 -9.07239 -8.56013 -8.37719 -6.04340 -0.02098 0.69093 1.46003 1.49066 1.60977 1.74388 1.85197 2.09387 2.21084 2.35215 2.59374 2.93801 2.97939 3.26618 3.89974 4.07414 4.19627 4.41074 4.44994 4.49969 4.57170 4.65327 4.81241 4.90293 4.99566 5.14417 5.16386 5.40753 5.65091 5.75213 5.79217 5.83154 5.89599 5.97941 6.27773 6.35297 6.79512 7.03882 7.37571 7.48445 7.82675 8.69094 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.006148 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.074699 B = 4553.456136 C = 5715.398540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.342 4.342 8 H 0.108 0.892 9 N -0.431 5.431 10 C 0.153 3.847 11 C 0.502 3.498 12 O -0.542 6.542 13 O -0.524 6.524 14 C 0.504 3.496 15 O -0.632 6.632 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.103 4.103 19 C -0.107 4.107 20 C -0.235 4.235 21 C 0.078 3.922 22 N -0.586 5.586 23 H 0.429 0.571 24 C 0.061 3.939 25 C -0.087 4.087 26 H 0.273 0.727 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.411 0.589 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.167 0.833 33 H 0.221 0.779 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.622 -3.593 3.906 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.199 4.199 3 Si 0.812 3.188 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.469 4.469 8 H 0.126 0.874 9 N -0.148 5.148 10 C 0.028 3.972 11 C 0.343 3.657 12 O -0.430 6.430 13 O -0.337 6.337 14 C 0.297 3.703 15 O -0.522 6.522 16 C -0.115 4.115 17 C -0.128 4.128 18 C -0.121 4.121 19 C -0.112 4.112 20 C -0.259 4.259 21 C -0.049 4.049 22 N -0.190 5.190 23 H 0.268 0.732 24 C -0.046 4.046 25 C -0.109 4.109 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.108 0.892 29 H 0.270 0.730 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.184 0.816 33 H 0.237 0.763 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.573 -4.081 3.806 11.955 hybrid contribution -0.935 0.612 0.079 1.120 sum 9.638 -3.469 3.885 10.956 Atomic orbital electron populations 1.69703 1.07461 1.28569 1.47112 1.26223 0.96082 1.02731 0.94915 0.84970 0.78531 0.76485 0.78857 1.19293 1.21278 1.17760 1.19874 0.92651 0.82255 1.52150 0.87415 1.43226 1.21449 1.09488 1.40591 1.20406 0.81552 1.02973 0.92268 1.23543 0.84227 0.69885 0.87997 1.90533 1.86656 1.46436 1.19338 1.84436 1.16852 1.85850 1.46528 1.18671 0.86141 0.84017 0.81500 1.90559 1.63647 1.29467 1.68510 1.19471 0.96618 0.95124 1.00302 1.21626 0.97982 0.97649 0.95519 1.20422 0.94706 0.98381 0.98591 1.19807 0.98443 0.92849 1.00122 1.22024 0.98847 0.98040 1.07028 1.22594 0.96006 0.93035 0.93301 1.41795 1.24185 1.12711 1.40312 0.73227 1.18002 0.94028 0.91610 1.00955 1.19981 0.93789 0.98083 0.99025 0.91727 0.86457 0.89180 0.72954 0.84111 0.84292 0.81579 0.76292 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.07 8.72 21.68 0.19 -45.88 16 2 C 0.00 0.17 5.12 84.95 0.44 0.61 16 3 Si 0.99 38.76 29.56 68.60 2.03 40.79 16 4 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.29 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 7 C -0.34 -17.18 6.11 84.10 0.51 -16.67 16 8 H 0.11 5.25 6.21 -2.91 -0.02 5.23 16 9 N -0.43 -22.49 2.15 -643.28 -1.38 -23.87 16 10 C 0.15 7.50 5.18 85.63 0.44 7.94 16 11 C 0.50 24.95 6.37 71.24 0.45 25.40 16 12 O -0.54 -30.97 16.05 21.98 0.35 -30.62 16 13 O -0.52 -20.94 13.42 -51.44 -0.69 -21.63 16 14 C 0.50 26.90 7.14 86.67 0.62 27.51 16 15 O -0.63 -35.96 16.27 -4.13 -0.07 -36.02 16 16 C -0.11 -5.24 5.53 -20.08 -0.11 -5.35 16 17 C -0.11 -4.81 7.70 22.29 0.17 -4.64 16 18 C -0.10 -3.79 10.03 22.20 0.22 -3.57 16 19 C -0.11 -3.57 6.37 -20.13 -0.13 -3.69 16 20 C -0.23 -5.56 11.08 23.49 0.26 -5.30 16 21 C 0.08 1.39 11.81 83.10 0.98 2.37 16 22 N -0.59 -13.21 6.07 -187.70 -1.14 -14.35 16 23 H 0.43 6.84 8.96 -92.71 -0.83 6.01 16 24 C 0.06 2.03 7.26 38.95 0.28 2.32 16 25 C -0.09 -3.52 9.60 22.64 0.22 -3.30 16 26 H 0.27 13.55 8.31 -92.70 -0.77 12.78 16 27 H 0.12 5.57 7.09 -2.39 -0.02 5.55 16 28 H 0.09 4.17 7.56 -2.39 -0.02 4.15 16 29 H 0.41 12.67 9.10 -74.06 -0.67 11.99 16 30 H 0.14 6.87 5.30 -2.91 -0.02 6.86 16 31 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.22 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.12 4.74 7.84 -2.91 -0.02 4.71 16 Total: -1.00 -74.05 297.42 3.33 -70.72 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -0.32 Total: 37.24 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 4.36 Total: 23.64 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.33 Total: -84.10 kcal Atomic # 8 Polarization: -87.87 SS G_CDS: -0.41 Total: -88.28 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -74.05 3.33 -70.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.299 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds