Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48502 * 109.46830 * 239.99789 * 3 2 1 5 5 H 1.48499 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47318 * 119.99978 * 3 2 1 7 7 C 1.39060 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99832 * 204.96559 * 7 2 1 9 9 N 1.36809 * 120.00068 * 24.95724 * 7 2 1 10 10 C 1.46495 * 119.99916 * 12.24540 * 9 7 2 11 11 C 1.50705 * 109.47263 * 264.24829 * 10 9 7 12 12 O 1.20825 * 119.99636 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99977 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99975 * 192.24712 * 9 7 2 15 15 O 1.21701 * 119.99911 * 4.98471 * 14 9 7 16 16 C 1.46891 * 119.99929 * 184.99120 * 14 9 7 17 17 C 1.36019 * 125.44371 * 163.88190 * 16 14 9 18 18 C 1.41536 * 107.72426 * 179.97438 * 17 16 14 19 19 C 1.40132 * 133.35954 * 179.97438 * 18 17 16 20 20 C 1.36441 * 119.82356 * 180.02562 * 19 18 17 21 21 C 1.38934 * 120.61995 * 359.93546 * 20 19 18 22 22 C 1.37702 * 120.64852 * 0.10161 * 21 20 19 23 23 C 1.39202 * 119.81197 * 359.93121 * 22 21 20 24 24 N 1.37534 * 133.16542 * 180.02562 * 23 22 21 25 25 H 0.97005 * 125.60933 * 359.97438 * 24 23 22 26 26 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47133 * 24.25239 * 10 9 7 28 28 H 1.09010 * 109.46911 * 144.25339 * 10 9 7 29 29 H 0.96700 * 117.00124 * 179.97438 * 13 11 10 30 30 H 1.08006 * 126.13461 * 359.95509 * 17 16 14 31 31 H 1.07995 * 120.08539 * 0.06788 * 19 18 17 32 32 H 1.08009 * 119.68803 * 180.02562 * 20 19 18 33 33 H 1.07990 * 119.67899 * 180.02562 * 21 20 19 34 34 H 1.07994 * 120.09246 * 180.21499 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6963 -1.2125 5 1 1.2826 2.7464 -0.0006 6 1 3.1014 1.6964 1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0132 -1.2482 0.3942 9 7 1.4206 -2.3336 -0.5010 10 6 0.1804 -2.2323 -1.2741 11 6 -0.9984 -2.4740 -0.3668 12 8 -0.8207 -2.7065 0.8055 13 8 -2.2456 -2.4310 -0.8610 14 6 1.9821 -3.5392 -0.2826 15 8 2.9607 -3.6338 0.4347 16 6 1.4129 -4.7390 -0.9105 17 6 2.0404 -5.9399 -1.0298 18 6 1.1550 -6.8249 -1.6903 19 6 1.2505 -8.1671 -2.0815 20 6 0.2024 -8.7643 -2.7191 21 6 -0.9621 -8.0543 -2.9842 22 6 -1.0799 -6.7342 -2.6104 23 6 -0.0241 -6.1025 -1.9592 24 7 0.1545 -4.8282 -1.4737 25 1 -0.4960 -4.1100 -1.5193 26 1 -0.4850 0.8401 -0.0004 27 1 0.1048 -1.2364 -1.7107 28 1 0.1859 -2.9781 -2.0691 29 1 -2.9695 -2.5928 -0.2406 30 1 3.0357 -6.1757 -0.6831 31 1 2.1510 -8.7276 -1.8783 32 1 0.2781 -9.7990 -3.0193 33 1 -1.7825 -8.5421 -3.4893 34 1 -1.9904 -6.1919 -2.8177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739088572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -28.516827 kcal Electronic energy + Delta-G solvation = -22992.526110 eV Core-core repulsion = 19471.497519 eV Total energy + Delta-G solvation = -3521.028591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41815 -39.64830 -38.27985 -36.44023 -35.58872 -34.87942 -32.27114 -31.72749 -29.48314 -28.65400 -27.96654 -25.50916 -23.11419 -21.82041 -21.44207 -20.75868 -19.47828 -17.68244 -17.40094 -17.20062 -16.85823 -15.99124 -15.46834 -15.20419 -14.82397 -14.49715 -14.24044 -14.02037 -13.71614 -13.43109 -13.24656 -12.83190 -12.53338 -12.29234 -11.86776 -11.81619 -11.54551 -11.34707 -11.09315 -10.76569 -10.70456 -10.59966 -10.48518 -10.00489 -9.60259 -9.30401 -8.95800 -8.25220 -7.97508 -7.47110 -6.73662 -4.08402 1.12440 1.82874 2.55505 2.91283 3.08945 3.12196 3.15740 3.36661 3.56597 3.91020 4.07275 4.19137 4.41411 4.82903 4.91558 5.14434 5.17896 5.30966 5.38243 5.57037 5.61218 5.82104 5.96912 6.04934 6.21407 6.22721 6.30263 6.62664 6.75948 6.88016 7.01962 7.13093 7.30051 7.32672 7.60080 7.76266 8.10512 8.62708 8.80437 8.99550 9.53922 10.34646 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.005440 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.123112 B = 5145.429017 C = 5896.749310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.031 3.969 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.117 0.883 9 N -0.415 5.415 10 C 0.118 3.882 11 C 0.471 3.529 12 O -0.487 6.487 13 O -0.533 6.533 14 C 0.506 3.494 15 O -0.555 6.555 16 C 0.063 3.937 17 C -0.146 4.146 18 C -0.106 4.106 19 C -0.069 4.069 20 C -0.153 4.153 21 C -0.105 4.105 22 C -0.127 4.127 23 C 0.092 3.908 24 N -0.589 5.589 25 H 0.417 0.583 26 H 0.277 0.723 27 H 0.143 0.857 28 H 0.086 0.914 29 H 0.399 0.601 30 H 0.152 0.848 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 -8.581 -8.145 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.432 4.432 8 H 0.135 0.865 9 N -0.133 5.133 10 C -0.009 4.009 11 C 0.311 3.689 12 O -0.371 6.371 13 O -0.344 6.344 14 C 0.296 3.704 15 O -0.437 6.437 16 C -0.047 4.047 17 C -0.173 4.173 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.172 4.172 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.018 4.018 24 N -0.202 5.202 25 H 0.263 0.737 26 H 0.087 0.913 27 H 0.161 0.839 28 H 0.103 0.897 29 H 0.256 0.744 30 H 0.169 0.831 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.428 -8.254 -7.658 12.099 hybrid contribution -0.859 1.222 0.561 1.596 sum -5.288 -7.032 -7.097 11.304 Atomic orbital electron populations 1.69823 1.06362 1.28803 1.46164 1.25350 0.95338 1.00438 0.96204 0.85837 0.79092 0.79458 0.79550 1.19461 1.20788 1.19421 1.19816 1.00046 0.83575 1.39809 0.86520 1.43404 1.18581 1.06112 1.45165 1.21268 0.81880 1.06311 0.91487 1.23857 0.83448 0.72389 0.89245 1.90679 1.85415 1.43189 1.17781 1.84514 1.17394 1.85274 1.47262 1.16896 0.87446 0.80979 0.85098 1.90695 1.28760 1.84326 1.39956 1.20816 0.85306 0.97580 1.01030 1.20753 1.00598 0.90842 1.05090 1.18251 0.94392 0.94524 1.03888 1.20355 0.98641 0.92477 0.97321 1.20530 0.94117 0.99847 1.02728 1.20734 0.97932 0.93283 1.00501 1.20048 0.96979 0.95338 1.02444 1.18480 0.96968 0.85432 1.00896 1.43452 1.15179 1.11006 1.50607 0.73663 0.91273 0.83920 0.89697 0.74391 0.83062 0.86125 0.86399 0.86072 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.71 9.47 55.50 0.53 -21.19 16 2 C 0.03 0.77 4.84 -17.45 -0.08 0.68 16 3 Si 0.94 19.42 29.62 -169.99 -5.04 14.38 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.31 -8.13 9.36 -15.03 -0.14 -8.27 16 8 H 0.12 3.23 7.37 -52.49 -0.39 2.84 16 9 N -0.41 -10.38 2.17 -117.51 -0.25 -10.63 16 10 C 0.12 2.51 4.75 -5.19 -0.02 2.48 16 11 C 0.47 10.04 4.57 36.01 0.16 10.20 16 12 O -0.49 -12.41 16.96 -18.75 -0.32 -12.72 16 13 O -0.53 -8.81 13.40 -39.25 -0.53 -9.33 16 14 C 0.51 12.79 7.37 -12.76 -0.09 12.70 16 15 O -0.56 -15.59 16.52 5.19 0.09 -15.50 16 16 C 0.06 1.34 6.54 -82.31 -0.54 0.81 16 17 C -0.15 -2.82 10.57 -39.12 -0.41 -3.24 16 18 C -0.11 -1.81 6.16 -106.93 -0.66 -2.47 16 19 C -0.07 -0.96 10.06 -39.52 -0.40 -1.36 16 20 C -0.15 -1.85 9.96 -39.97 -0.40 -2.25 16 21 C -0.10 -1.26 10.02 -39.52 -0.40 -1.66 16 22 C -0.13 -1.77 10.08 -39.42 -0.40 -2.17 16 23 C 0.09 1.56 7.25 -83.95 -0.61 0.95 16 24 N -0.59 -11.01 4.90 -7.36 -0.04 -11.04 16 25 H 0.42 7.45 3.69 -40.82 -0.15 7.29 16 26 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.14 3.08 6.16 -51.93 -0.32 2.76 16 28 H 0.09 1.57 4.99 -51.92 -0.26 1.31 16 29 H 0.40 4.96 9.10 45.56 0.41 5.38 16 30 H 0.15 2.74 8.06 -52.48 -0.42 2.31 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 295.81 15.07 4.46 4.46 Total: -1.00 -32.49 295.81 -7.04 -39.53 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -1.95 Total: 15.64 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -3.99 Total: 6.41 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.23 Total: -42.86 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.76 Total: -37.56 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.04 Total: 14.38 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.49 -7.04 -39.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.008 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds