Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48502 * 109.46830 * 239.99789 * 3 2 1 5 5 H 1.48499 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47318 * 119.99978 * 3 2 1 7 7 C 1.39060 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99832 * 204.96559 * 7 2 1 9 9 N 1.36809 * 120.00068 * 24.95724 * 7 2 1 10 10 C 1.46495 * 119.99916 * 12.24540 * 9 7 2 11 11 C 1.50705 * 109.47263 * 264.24829 * 10 9 7 12 12 O 1.20825 * 119.99636 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99977 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99975 * 192.24712 * 9 7 2 15 15 O 1.21701 * 119.99911 * 4.98471 * 14 9 7 16 16 C 1.46891 * 119.99929 * 184.99120 * 14 9 7 17 17 C 1.36019 * 125.44371 * 163.88190 * 16 14 9 18 18 C 1.41536 * 107.72426 * 179.97438 * 17 16 14 19 19 C 1.40132 * 133.35954 * 179.97438 * 18 17 16 20 20 C 1.36441 * 119.82356 * 180.02562 * 19 18 17 21 21 C 1.38934 * 120.61995 * 359.93546 * 20 19 18 22 22 C 1.37702 * 120.64852 * 0.10161 * 21 20 19 23 23 C 1.39202 * 119.81197 * 359.93121 * 22 21 20 24 24 N 1.37534 * 133.16542 * 180.02562 * 23 22 21 25 25 H 0.97005 * 125.60933 * 359.97438 * 24 23 22 26 26 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47133 * 24.25239 * 10 9 7 28 28 H 1.09010 * 109.46911 * 144.25339 * 10 9 7 29 29 H 0.96700 * 117.00124 * 179.97438 * 13 11 10 30 30 H 1.08006 * 126.13461 * 359.95509 * 17 16 14 31 31 H 1.07995 * 120.08539 * 0.06788 * 19 18 17 32 32 H 1.08009 * 119.68803 * 180.02562 * 20 19 18 33 33 H 1.07990 * 119.67899 * 180.02562 * 21 20 19 34 34 H 1.07994 * 120.09246 * 180.21499 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6963 -1.2125 5 1 1.2826 2.7464 -0.0006 6 1 3.1014 1.6964 1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0132 -1.2482 0.3942 9 7 1.4206 -2.3336 -0.5010 10 6 0.1804 -2.2323 -1.2741 11 6 -0.9984 -2.4740 -0.3668 12 8 -0.8207 -2.7065 0.8055 13 8 -2.2456 -2.4310 -0.8610 14 6 1.9821 -3.5392 -0.2826 15 8 2.9607 -3.6338 0.4347 16 6 1.4129 -4.7390 -0.9105 17 6 2.0404 -5.9399 -1.0298 18 6 1.1550 -6.8249 -1.6903 19 6 1.2505 -8.1671 -2.0815 20 6 0.2024 -8.7643 -2.7191 21 6 -0.9621 -8.0543 -2.9842 22 6 -1.0799 -6.7342 -2.6104 23 6 -0.0241 -6.1025 -1.9592 24 7 0.1545 -4.8282 -1.4737 25 1 -0.4960 -4.1100 -1.5193 26 1 -0.4850 0.8401 -0.0004 27 1 0.1048 -1.2364 -1.7107 28 1 0.1859 -2.9781 -2.0691 29 1 -2.9695 -2.5928 -0.2406 30 1 3.0357 -6.1757 -0.6831 31 1 2.1510 -8.7276 -1.8783 32 1 0.2781 -9.7990 -3.0193 33 1 -1.7825 -8.5421 -3.4893 34 1 -1.9904 -6.1919 -2.8177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739088572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = -50.204270 kcal Electronic energy + Delta-G solvation = -22993.466548 eV Core-core repulsion = 19471.497519 eV Total energy + Delta-G solvation = -3521.969030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.84075 -41.25432 -40.02368 -37.66410 -37.31364 -36.68572 -34.06259 -33.09459 -30.83682 -30.03687 -29.56417 -27.28549 -24.59053 -23.18849 -22.94342 -22.10156 -21.03536 -19.43490 -19.02523 -18.68128 -18.47961 -17.65752 -16.94584 -16.60459 -16.48359 -16.11393 -15.84406 -15.40220 -15.01852 -14.97295 -14.65357 -14.42995 -14.00723 -13.81263 -13.65007 -13.47842 -12.82755 -12.61429 -12.55646 -12.46299 -12.34678 -12.18136 -11.81945 -11.76370 -11.15426 -10.92434 -10.85255 -10.15177 -9.20116 -8.77370 -8.62344 -6.07855 -0.15347 0.71374 1.07152 1.27783 1.40474 1.44671 1.52100 1.86236 2.05616 2.19719 2.38052 2.65003 2.95657 3.02600 3.54856 3.73661 3.79426 4.13152 4.25891 4.39337 4.44402 4.49912 4.57167 4.62880 4.86814 4.96603 5.17284 5.32024 5.48635 5.60702 5.66196 5.71596 5.74433 5.83976 6.14574 6.22077 6.34572 6.86521 7.01656 7.14100 7.64491 8.43893 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.005440 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.123112 B = 5145.429017 C = 5896.749310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.005 3.995 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.278 1.278 7 C -0.350 4.350 8 H 0.089 0.911 9 N -0.424 5.424 10 C 0.117 3.883 11 C 0.484 3.516 12 O -0.535 6.535 13 O -0.511 6.511 14 C 0.495 3.505 15 O -0.606 6.606 16 C 0.020 3.980 17 C -0.137 4.137 18 C -0.133 4.133 19 C -0.074 4.074 20 C -0.144 4.144 21 C -0.084 4.084 22 C -0.142 4.142 23 C 0.082 3.918 24 N -0.589 5.589 25 H 0.416 0.584 26 H 0.283 0.717 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.421 0.579 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -10.285 -10.405 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.198 4.198 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.203 1.203 7 C -0.477 4.477 8 H 0.107 0.893 9 N -0.141 5.141 10 C -0.009 4.009 11 C 0.325 3.675 12 O -0.423 6.423 13 O -0.324 6.324 14 C 0.286 3.714 15 O -0.492 6.492 16 C -0.089 4.089 17 C -0.164 4.164 18 C -0.138 4.138 19 C -0.093 4.093 20 C -0.163 4.163 21 C -0.103 4.103 22 C -0.163 4.163 23 C -0.027 4.027 24 N -0.203 5.203 25 H 0.263 0.737 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.130 0.870 29 H 0.282 0.718 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.710 -9.963 -9.964 15.606 hybrid contribution -0.334 1.507 1.158 1.930 sum -7.044 -8.455 -8.806 14.094 Atomic orbital electron populations 1.69877 1.07137 1.29833 1.45251 1.26139 0.96180 1.02717 0.94785 0.84887 0.77980 0.75521 0.79316 1.18430 1.19203 1.20338 1.19765 0.99859 0.85367 1.42679 0.89280 1.43505 1.19696 1.05720 1.45181 1.21368 0.80861 1.06948 0.91713 1.23675 0.84570 0.71042 0.88206 1.90668 1.86316 1.45644 1.19710 1.84437 1.16430 1.84289 1.47241 1.17490 0.87018 0.82152 0.84748 1.90617 1.30874 1.85436 1.42283 1.20269 0.87353 0.96719 1.04557 1.20966 1.00753 0.90823 1.03860 1.18450 0.94116 0.96016 1.05192 1.20704 1.00380 0.91138 0.97061 1.21047 0.93078 1.01539 1.00642 1.21325 0.98791 0.92232 0.97941 1.20448 0.96949 0.96425 1.02440 1.18961 0.98068 0.84574 1.01090 1.43218 1.14133 1.11915 1.50985 0.73746 0.90658 0.84300 0.87002 0.71816 0.83181 0.84140 0.82527 0.81928 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.30 9.47 21.68 0.21 -44.10 16 2 C 0.01 0.26 4.84 84.96 0.41 0.67 16 3 Si 1.00 40.40 29.62 68.60 2.03 42.43 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.35 -19.72 9.36 84.11 0.79 -18.93 16 8 H 0.09 5.36 7.37 -2.91 -0.02 5.34 16 9 N -0.42 -22.46 2.17 -643.90 -1.40 -23.86 16 10 C 0.12 5.13 4.75 85.64 0.41 5.54 16 11 C 0.48 20.78 4.57 71.24 0.33 21.11 16 12 O -0.54 -28.10 16.96 21.97 0.37 -27.72 16 13 O -0.51 -16.15 13.40 -51.38 -0.69 -16.84 16 14 C 0.49 26.79 7.37 86.51 0.64 27.43 16 15 O -0.61 -36.92 16.52 -4.35 -0.07 -36.99 16 16 C 0.02 0.92 6.54 39.90 0.26 1.18 16 17 C -0.14 -5.47 10.57 22.57 0.24 -5.23 16 18 C -0.13 -4.45 6.16 -21.36 -0.13 -4.58 16 19 C -0.07 -1.84 10.06 22.31 0.22 -1.62 16 20 C -0.14 -2.74 9.96 22.02 0.22 -2.52 16 21 C -0.08 -1.55 10.02 22.31 0.22 -1.33 16 22 C -0.14 -3.43 10.08 22.37 0.23 -3.21 16 23 C 0.08 2.68 7.25 39.13 0.28 2.96 16 24 N -0.59 -22.22 4.90 -177.19 -0.87 -23.09 16 25 H 0.42 14.91 3.69 -92.70 -0.34 14.56 16 26 H 0.28 13.20 8.31 -92.71 -0.77 12.43 16 27 H 0.14 6.11 6.16 -2.39 -0.01 6.10 16 28 H 0.11 4.21 4.99 -2.38 -0.01 4.20 16 29 H 0.42 9.62 9.10 -74.06 -0.67 8.95 16 30 H 0.15 5.77 8.06 -2.91 -0.02 5.75 16 31 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.16 1.75 8.06 -2.92 -0.02 1.72 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -75.75 295.81 3.87 -71.89 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: 0.17 Total: 36.81 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 4.11 Total: 21.47 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -2.06 Total: -91.05 kcal Atomic # 8 Polarization: -81.17 SS G_CDS: -0.39 Total: -81.55 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -75.75 3.87 -71.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.684 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds