Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48498 * 109.46865 * 270.00465 * 3 2 1 5 5 H 1.48508 * 109.46787 * 30.00024 * 3 2 1 6 6 H 1.48494 * 109.47048 * 149.99983 * 3 2 1 7 7 C 1.37872 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00640 * 0.02562 * 7 2 1 9 9 C 1.50709 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46658 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46857 * 180.02562 * 11 10 9 13 13 C 1.34768 * 116.99616 * 180.02562 * 12 11 10 14 14 O 1.21523 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.47277 * 119.99624 * 180.27185 * 13 12 11 16 16 C 1.40042 * 120.16821 * 89.44860 * 15 13 12 17 17 F 1.35098 * 120.08950 * 359.97438 * 16 15 13 18 18 C 1.38092 * 119.82471 * 179.69522 * 16 15 13 19 19 C 1.38607 * 120.16894 * 0.60524 * 18 16 15 20 20 F 1.35099 * 119.82869 * 179.70026 * 19 18 16 21 21 C 1.38614 * 120.34504 * 359.66774 * 19 18 16 22 22 C 1.38082 * 120.17080 * 0.02682 * 21 19 18 23 23 F 1.35096 * 120.08676 * 180.02562 * 22 21 19 24 24 H 0.96994 * 120.00196 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47138 * 59.99876 * 9 7 2 26 26 H 1.09004 * 109.46725 * 299.99800 * 9 7 2 27 27 H 1.08998 * 109.47561 * 59.99850 * 10 9 7 28 28 H 1.08996 * 109.47184 * 299.99603 * 10 9 7 29 29 H 1.08998 * 109.47272 * 59.99655 * 11 10 9 30 30 H 1.09004 * 109.46829 * 299.99434 * 11 10 9 31 31 H 1.07992 * 119.91378 * 180.27300 * 18 16 15 32 32 H 1.08006 * 119.91563 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5517 -2.6363 0.0001 12 8 6.0357 -4.0053 -0.0004 13 6 7.3718 -4.1818 0.0002 14 8 8.1120 -3.2180 0.0005 15 6 7.9347 -5.5427 -0.0064 16 6 8.1942 -6.1911 -1.2202 17 9 7.9284 -5.5702 -2.3902 18 6 8.7280 -7.4647 -1.2180 19 6 8.9951 -8.1060 -0.0186 20 9 9.5117 -9.3544 -0.0246 21 6 8.7357 -7.4730 1.1869 22 6 8.2079 -6.1971 1.2013 23 9 7.9561 -5.5816 2.3772 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6795 0.8894 26 1 3.8745 -0.6807 -0.8906 27 1 3.6579 -3.1505 -0.8896 28 1 3.6587 -3.1500 0.8903 29 1 5.9149 -2.1224 0.8900 30 1 5.9149 -2.1226 -0.8900 31 1 8.9329 -7.9644 -2.1532 32 1 8.9469 -7.9791 2.1174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744138745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = -200.551066 kcal Electronic energy + Delta-G solvation = -21656.623663 eV Core-core repulsion = 17553.985616 eV Total energy + Delta-G solvation = -4102.638047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.75647 -49.70579 -49.67981 -40.55816 -38.89900 -36.66731 -34.13860 -32.07826 -31.52972 -31.33541 -27.72415 -25.06735 -23.89178 -23.07736 -21.44716 -20.33150 -19.26264 -18.60383 -18.28230 -17.33566 -16.83955 -16.69047 -16.62036 -16.49020 -16.16027 -15.95219 -15.94388 -15.52584 -14.97046 -14.30646 -14.17362 -13.83001 -12.98914 -12.97256 -12.79137 -12.71933 -12.36579 -12.34565 -11.97584 -11.11907 -11.04454 -10.94455 -10.53723 -10.07591 -9.87310 -9.76922 -9.63607 -9.59260 -9.27311 -8.58479 -6.08626 -4.07973 -0.10698 0.13575 1.76968 2.24946 2.54367 2.78671 3.28833 3.36529 3.39704 3.41866 3.48795 3.99934 4.03489 4.29856 4.41492 4.88985 4.90872 4.98403 4.99698 5.19409 5.24405 5.36966 5.37731 5.77062 5.87625 6.14148 6.33668 6.51203 6.73198 7.17157 7.28972 7.49338 7.71675 8.47717 8.95465 9.52673 11.04536 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.003038 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.084283 B = 9214.831144 C = 9333.224921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.063 3.937 12 O -0.341 6.341 13 C 0.513 3.487 14 O -0.482 6.482 15 C -0.187 4.187 16 C 0.205 3.795 17 F -0.107 7.107 18 C -0.201 4.201 19 C 0.184 3.816 20 F -0.115 7.115 21 C -0.201 4.201 22 C 0.205 3.795 23 F -0.107 7.107 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.015 0.985 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.880 -17.932 -0.015 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.009 4.009 12 O -0.257 6.257 13 C 0.354 3.646 14 O -0.369 6.369 15 C -0.190 4.190 16 C 0.185 3.815 17 F -0.085 7.085 18 C -0.221 4.221 19 C 0.164 3.836 20 F -0.093 7.093 21 C -0.221 4.221 22 C 0.185 3.815 23 F -0.085 7.085 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.185 0.815 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 20.894 -17.470 -0.012 27.235 hybrid contribution 0.368 1.065 -0.020 1.127 sum 21.262 -16.405 -0.032 26.855 Atomic orbital electron populations 1.69903 1.06291 1.27017 1.50768 1.25011 0.94757 0.99181 0.94424 0.86785 0.80384 0.83567 0.78621 1.20176 1.21256 1.18956 1.21042 0.88972 0.94706 1.51314 0.90763 1.19527 0.97598 0.90878 0.96763 1.21589 0.88282 1.01003 1.03044 1.23682 0.97402 0.77298 1.02550 1.86666 1.21519 1.35052 1.82420 1.20366 0.82347 0.88207 0.73693 1.90907 1.60810 1.41384 1.43830 1.19205 1.10846 0.95932 0.93005 1.16708 0.95089 0.89733 0.79965 1.91648 1.90672 1.81865 1.44297 1.20998 1.06454 0.94720 0.99922 1.16918 0.93930 0.80213 0.92517 1.91606 1.83350 1.37110 1.97231 1.21000 1.06554 0.94720 0.99823 1.16706 0.95174 0.89756 0.79866 1.91647 1.90946 1.82124 1.43770 0.92609 0.96186 0.96634 0.91353 0.91337 0.91027 0.91045 0.81539 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.10 -2.01 5.53 -26.73 -0.15 -2.16 16 11 C 0.06 1.10 5.48 37.16 0.20 1.31 16 12 O -0.34 -5.64 10.23 -40.68 -0.42 -6.06 16 13 C 0.51 7.94 6.67 34.40 0.23 8.17 16 14 O -0.48 -8.55 16.90 -19.28 -0.33 -8.87 16 15 C -0.19 -2.19 5.76 -104.87 -0.60 -2.80 16 16 C 0.21 2.01 7.29 -38.96 -0.28 1.73 16 17 F -0.11 -1.20 16.83 2.25 0.04 -1.16 16 18 C -0.20 -1.36 9.99 -39.50 -0.39 -1.75 16 19 C 0.18 1.19 7.30 -39.31 -0.29 0.91 16 20 F -0.11 -0.73 17.26 2.25 0.04 -0.69 16 21 C -0.20 -1.36 9.98 -39.50 -0.39 -1.75 16 22 C 0.21 2.01 7.29 -38.96 -0.28 1.72 16 23 F -0.11 -1.20 16.83 2.25 0.04 -1.16 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 26 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -31.85 304.43 -5.33 -37.18 By element: Atomic # 1 Polarization: -2.70 SS G_CDS: -2.89 Total: -5.58 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.51 Total: -8.25 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.74 Total: -14.93 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.11 Total: -3.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.85 -5.33 -37.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744138745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.372 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds