Wall clock time and date at job start Tue Mar 31 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48498 * 109.46865 * 270.00465 * 3 2 1 5 5 H 1.48508 * 109.46787 * 30.00024 * 3 2 1 6 6 H 1.48494 * 109.47048 * 149.99983 * 3 2 1 7 7 C 1.37872 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00640 * 0.02562 * 7 2 1 9 9 C 1.50709 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46658 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46857 * 180.02562 * 11 10 9 13 13 C 1.34768 * 116.99616 * 180.02562 * 12 11 10 14 14 O 1.21523 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.47277 * 119.99624 * 180.27185 * 13 12 11 16 16 C 1.40042 * 120.16821 * 89.44860 * 15 13 12 17 17 F 1.35098 * 120.08950 * 359.97438 * 16 15 13 18 18 C 1.38092 * 119.82471 * 179.69522 * 16 15 13 19 19 C 1.38607 * 120.16894 * 0.60524 * 18 16 15 20 20 F 1.35099 * 119.82869 * 179.70026 * 19 18 16 21 21 C 1.38614 * 120.34504 * 359.66774 * 19 18 16 22 22 C 1.38082 * 120.17080 * 0.02682 * 21 19 18 23 23 F 1.35096 * 120.08676 * 180.02562 * 22 21 19 24 24 H 0.96994 * 120.00196 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47138 * 59.99876 * 9 7 2 26 26 H 1.09004 * 109.46725 * 299.99800 * 9 7 2 27 27 H 1.08998 * 109.47561 * 59.99850 * 10 9 7 28 28 H 1.08996 * 109.47184 * 299.99603 * 10 9 7 29 29 H 1.08998 * 109.47272 * 59.99655 * 11 10 9 30 30 H 1.09004 * 109.46829 * 299.99434 * 11 10 9 31 31 H 1.07992 * 119.91378 * 180.27300 * 18 16 15 32 32 H 1.08006 * 119.91563 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5517 -2.6363 0.0001 12 8 6.0357 -4.0053 -0.0004 13 6 7.3718 -4.1818 0.0002 14 8 8.1120 -3.2180 0.0005 15 6 7.9347 -5.5427 -0.0064 16 6 8.1942 -6.1911 -1.2202 17 9 7.9284 -5.5702 -2.3902 18 6 8.7280 -7.4647 -1.2180 19 6 8.9951 -8.1060 -0.0186 20 9 9.5117 -9.3544 -0.0246 21 6 8.7357 -7.4730 1.1869 22 6 8.2079 -6.1971 1.2013 23 9 7.9561 -5.5816 2.3772 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6795 0.8894 26 1 3.8745 -0.6807 -0.8906 27 1 3.6579 -3.1505 -0.8896 28 1 3.6587 -3.1500 0.8903 29 1 5.9149 -2.1224 0.8900 30 1 5.9149 -2.1226 -0.8900 31 1 8.9329 -7.9644 -2.1532 32 1 8.9469 -7.9791 2.1174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744138745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:20 Heat of formation + Delta-G solvation = -218.403492 kcal Electronic energy + Delta-G solvation = -21657.397802 eV Core-core repulsion = 17553.985616 eV Total energy + Delta-G solvation = -4103.412187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.48489 -50.46208 -50.28789 -41.75728 -39.65539 -37.99541 -35.99371 -33.94979 -32.49130 -31.96717 -29.50395 -26.14758 -24.63017 -24.55627 -22.55401 -22.10079 -19.97889 -19.38393 -19.33967 -19.05876 -18.19852 -17.66832 -17.50098 -17.22491 -17.19019 -16.73202 -16.57922 -16.37036 -16.22478 -15.68800 -15.54068 -15.04327 -14.82377 -14.09426 -14.03140 -13.79056 -13.62685 -13.19965 -13.03825 -12.90274 -12.67992 -12.33615 -12.13733 -11.80844 -11.73763 -11.48343 -11.39767 -10.78881 -10.30269 -10.26965 -8.31478 -6.36854 -0.81315 -0.48827 0.59326 1.25695 1.36413 1.38010 1.49675 1.78262 2.09683 2.34750 2.75848 2.83416 3.03683 3.15752 3.33604 3.55096 3.91167 3.92033 4.23282 4.23380 4.29250 4.31507 4.33867 4.63074 4.67647 4.68540 4.90317 5.07620 5.28183 5.39673 5.45028 5.59735 6.22325 6.27227 6.70819 7.27754 8.85144 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.003038 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.084283 B = 9214.831144 C = 9333.224921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.535 4.535 8 H 0.035 0.965 9 C -0.009 4.009 10 C -0.092 4.092 11 C 0.070 3.930 12 O -0.347 6.347 13 C 0.514 3.486 14 O -0.511 6.511 15 C -0.212 4.212 16 C 0.193 3.807 17 F -0.120 7.120 18 C -0.179 4.179 19 C 0.198 3.802 20 F -0.107 7.107 21 C -0.179 4.179 22 C 0.193 3.807 23 F -0.120 7.120 24 H 0.268 0.732 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.196 0.804 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.375 -18.952 -0.035 30.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.054 0.946 9 C -0.046 4.046 10 C -0.130 4.130 11 C -0.003 4.003 12 O -0.263 6.263 13 C 0.357 3.643 14 O -0.399 6.399 15 C -0.215 4.215 16 C 0.173 3.827 17 F -0.098 7.098 18 C -0.199 4.199 19 C 0.178 3.822 20 F -0.085 7.085 21 C -0.199 4.199 22 C 0.173 3.827 23 F -0.098 7.098 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.213 0.787 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 23.406 -18.521 -0.033 29.847 hybrid contribution -0.418 1.193 -0.014 1.265 sum 22.988 -17.327 -0.048 28.787 Atomic orbital electron populations 1.70055 1.08304 1.28310 1.52323 1.26002 0.95638 1.03535 0.93965 0.85663 0.79551 0.78158 0.79342 1.19022 1.20875 1.16880 1.21390 0.91644 0.93403 1.50874 0.94625 1.19450 0.94367 0.93427 0.97373 1.21342 0.90195 0.98701 1.02763 1.23402 0.95584 0.78148 1.03150 1.86650 1.22774 1.34231 1.82667 1.20996 0.81436 0.89624 0.72286 1.90877 1.61055 1.42819 1.45178 1.19192 1.12893 0.94647 0.94803 1.16837 0.96284 0.90690 0.78891 1.91614 1.91009 1.82330 1.44840 1.21222 1.04131 0.93109 1.01394 1.16860 0.92964 0.80177 0.92229 1.91643 1.83057 1.36612 1.97171 1.21224 1.04229 0.93117 1.01283 1.16835 0.96367 0.90712 0.78795 1.91613 1.91278 1.82584 1.44319 0.92347 0.95445 0.95564 0.91688 0.91715 0.90496 0.90438 0.78653 0.78645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.95 44.12 27.47 68.60 1.88 46.00 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.54 -30.94 9.66 25.60 0.25 -30.70 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.09 -3.65 5.53 30.60 0.17 -3.48 16 11 C 0.07 2.41 5.48 71.98 0.39 2.80 16 12 O -0.35 -11.49 10.23 -56.79 -0.58 -12.08 16 13 C 0.51 15.91 6.67 70.20 0.47 16.38 16 14 O -0.51 -18.18 16.90 19.76 0.33 -17.85 16 15 C -0.21 -4.84 5.76 -20.02 -0.12 -4.96 16 16 C 0.19 3.51 7.29 22.67 0.17 3.68 16 17 F -0.12 -2.60 16.83 44.97 0.76 -1.85 16 18 C -0.18 -1.87 9.99 22.32 0.22 -1.65 16 19 C 0.20 1.85 7.30 22.45 0.16 2.02 16 20 F -0.11 -0.93 17.26 44.97 0.78 -0.15 16 21 C -0.18 -1.87 9.98 22.32 0.22 -1.65 16 22 C 0.19 3.51 7.29 22.67 0.17 3.67 16 23 F -0.12 -2.60 16.83 44.97 0.76 -1.84 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 26 H 0.03 1.16 7.57 -2.38 -0.02 1.15 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 30 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 32 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -70.39 304.43 8.03 -62.37 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: 1.11 Total: -1.81 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 2.69 Total: -13.38 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.30 Total: -59.42 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.25 Total: -29.92 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 2.29 Total: -3.84 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -70.39 8.03 -62.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744138745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.034 kcal (2) G-P(sol) polarization free energy of solvation -70.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds