Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47178 * 2 1 4 4 C 1.50700 * 109.47055 * 119.99545 * 2 1 3 5 5 O 1.21218 * 120.00072 * 119.99948 * 4 2 1 6 6 O 1.34309 * 120.00154 * 300.00100 * 4 2 1 7 7 C 1.34924 * 117.00044 * 179.97438 * 6 4 2 8 8 H 1.07997 * 120.00257 * 359.97438 * 7 6 4 9 9 C 1.38748 * 119.99822 * 179.72786 * 7 6 4 10 10 N 1.31442 * 120.00231 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00017 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47045 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47790 * 119.99544 * 11 9 7 14 14 H 1.48504 * 109.47198 * 239.99796 * 11 9 7 15 15 C 1.50693 * 109.47086 * 239.99395 * 2 1 3 16 16 C 1.38251 * 120.00325 * 300.00229 * 15 2 1 17 17 C 1.38219 * 120.00166 * 179.97438 * 16 15 2 18 18 C 1.38258 * 119.99672 * 359.97438 * 17 16 15 19 19 C 1.38210 * 120.00369 * 359.97438 * 18 17 16 20 20 C 1.38216 * 119.99810 * 119.72733 * 15 2 1 21 21 C 1.50705 * 120.00125 * 0.02562 * 20 15 2 22 22 F 1.39895 * 109.47203 * 179.97438 * 21 20 15 23 23 F 1.39904 * 109.46722 * 299.99611 * 21 20 15 24 24 F 1.39900 * 109.47198 * 59.99728 * 21 20 15 25 25 H 1.08999 * 109.47156 * 60.00374 * 1 2 3 26 26 H 1.08997 * 109.47508 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47141 * 300.00418 * 1 2 3 28 28 H 0.97009 * 119.99891 * 180.02562 * 10 9 7 29 29 H 1.08003 * 120.00217 * 359.97438 * 16 15 2 30 30 H 1.07993 * 120.00112 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.99704 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00161 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7292 -1.6959 1.1194 6 8 1.7078 -0.2514 2.4504 7 6 2.1898 -0.9339 3.5098 8 1 2.8062 -1.8070 3.3546 9 6 1.8977 -0.5110 4.7986 10 7 1.1520 0.5548 4.9874 11 14 2.5656 -1.4554 6.2653 12 1 3.3713 -2.6075 5.7871 13 1 3.4206 -0.5588 7.0839 14 1 1.4353 -1.9513 7.0911 15 6 2.0323 -0.7105 -1.2303 16 6 1.6983 -2.0341 -1.4491 17 6 2.1586 -2.6856 -2.5778 18 6 2.9526 -2.0134 -3.4884 19 6 3.2856 -0.6899 -3.2703 20 6 2.8222 -0.0372 -2.1430 21 6 3.1817 1.4073 -1.9075 22 9 3.9822 1.8660 -2.9590 23 9 2.0132 2.1738 -1.8416 24 9 3.8837 1.5227 -0.7029 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.9481 0.8506 5.8885 29 1 1.0777 -2.5591 -0.7379 30 1 1.8980 -3.7197 -2.7485 31 1 3.3126 -2.5226 -4.3702 32 1 3.9062 -0.1650 -3.9815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745307484.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -226.043974 kcal Electronic energy + Delta-G solvation = -23394.125508 eV Core-core repulsion = 19290.382005 eV Total energy + Delta-G solvation = -4103.743503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.32665 -48.81107 -48.73894 -41.52500 -40.21839 -37.35170 -35.35303 -34.29011 -32.99140 -30.76402 -27.72275 -27.05061 -25.82014 -23.78256 -22.98018 -21.30471 -19.91214 -19.62265 -19.58247 -19.27531 -18.38917 -17.18605 -16.96929 -16.41365 -16.18674 -16.08277 -15.65040 -15.57346 -15.51438 -15.17217 -14.93483 -14.89650 -14.75705 -14.48830 -14.06416 -13.69598 -13.65446 -13.39548 -13.12768 -13.06146 -12.74873 -12.41117 -12.22519 -12.10717 -12.05796 -11.89293 -10.98683 -10.71541 -10.19372 -9.88911 -8.55697 -6.35781 -0.09475 0.25347 1.26426 1.32835 1.51425 1.57374 1.59653 2.07720 2.44275 2.61850 2.79158 2.94203 2.95683 3.33020 3.35022 3.71519 3.94808 4.07123 4.15320 4.37455 4.39744 4.47051 4.67719 4.74271 4.83107 4.91223 5.10081 5.17586 5.21140 5.36238 5.42190 5.80606 5.82598 6.60525 6.89135 7.73254 8.65177 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.005261 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.567843 B = 5321.331449 C = 5836.837009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.048 4.048 3 H 0.098 0.902 4 C 0.405 3.595 5 O -0.568 6.568 6 O -0.240 6.240 7 C -0.421 4.421 8 H 0.082 0.918 9 C -0.004 4.004 10 N -0.902 5.902 11 Si 1.018 2.982 12 H -0.264 1.264 13 H -0.261 1.261 14 H -0.257 1.257 15 C -0.033 4.033 16 C -0.104 4.104 17 C -0.083 4.083 18 C -0.111 4.111 19 C -0.076 4.076 20 C -0.194 4.194 21 C 0.505 3.495 22 F -0.169 7.169 23 F -0.176 7.176 24 F -0.191 7.191 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.279 0.721 29 H 0.120 0.880 30 H 0.163 0.837 31 H 0.176 0.824 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -2.438 -17.679 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 H 0.116 0.884 4 C 0.252 3.748 5 O -0.465 6.465 6 O -0.148 6.148 7 C -0.496 4.496 8 H 0.100 0.900 9 C -0.204 4.204 10 N -0.539 5.539 11 Si 0.836 3.164 12 H -0.189 1.189 13 H -0.186 1.186 14 H -0.182 1.182 15 C -0.034 4.034 16 C -0.122 4.122 17 C -0.101 4.101 18 C -0.128 4.128 19 C -0.094 4.094 20 C -0.195 4.195 21 C 0.451 3.549 22 F -0.150 7.150 23 F -0.157 7.157 24 F -0.172 7.172 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.181 0.819 31 H 0.193 0.807 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.931 -2.501 -17.518 17.720 hybrid contribution 0.369 0.268 1.180 1.265 sum 1.300 -2.234 -16.338 16.541 Atomic orbital electron populations 1.21725 0.89330 1.03587 1.04003 1.20012 1.00204 0.99215 0.87324 0.88439 1.23826 0.80427 0.84389 0.86147 1.90522 1.39639 1.28645 1.87713 1.83891 1.64522 1.52575 1.13775 1.21472 1.33453 1.11538 0.83157 0.90035 1.26545 0.96022 0.97347 1.00486 1.70090 1.35775 1.24012 1.24022 0.84574 0.78565 0.77747 0.75493 1.18853 1.18569 1.18164 1.19106 0.96083 0.95437 0.92750 1.21073 1.00298 0.92650 0.98175 1.21741 0.94880 1.01355 0.92096 1.21603 0.97282 0.93242 1.00695 1.21293 0.97520 0.95940 0.94636 1.19894 1.06476 0.92036 1.01129 1.18457 0.74553 0.88268 0.73670 1.93146 1.74300 1.90486 1.57058 1.93196 1.48427 1.78202 1.95911 1.93230 1.79826 1.96802 1.47371 0.88473 0.91351 0.91955 0.91167 0.86230 0.81942 0.80682 0.82080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.94 71.98 0.64 -3.71 16 2 C -0.05 -1.93 2.38 -12.29 -0.03 -1.96 16 3 H 0.10 3.94 4.72 -2.39 -0.01 3.93 16 4 C 0.40 21.11 7.07 71.24 0.50 21.62 16 5 O -0.57 -31.44 14.35 20.75 0.30 -31.14 16 6 O -0.24 -14.51 9.65 14.85 0.14 -14.36 16 7 C -0.42 -26.03 9.64 67.94 0.66 -25.37 16 8 H 0.08 5.12 6.86 -2.91 -0.02 5.10 16 9 C 0.00 -0.22 5.49 84.87 0.47 0.25 16 10 N -0.90 -54.07 13.67 21.62 0.30 -53.78 16 11 Si 1.02 44.07 29.55 68.60 2.03 46.09 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 14 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 15 C -0.03 -1.13 4.36 -19.87 -0.09 -1.22 16 16 C -0.10 -3.13 7.93 22.27 0.18 -2.96 16 17 C -0.08 -1.77 10.05 22.27 0.22 -1.54 16 18 C -0.11 -1.97 10.05 22.27 0.22 -1.74 16 19 C -0.08 -1.66 9.43 22.27 0.21 -1.45 16 20 C -0.19 -5.74 5.37 -19.86 -0.11 -5.85 16 21 C 0.50 15.47 2.78 71.24 0.20 15.67 16 22 F -0.17 -4.41 15.97 44.97 0.72 -3.69 16 23 F -0.18 -5.35 15.83 44.97 0.71 -4.64 16 24 F -0.19 -7.10 15.82 44.97 0.71 -6.39 16 25 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.07 2.17 7.39 -2.39 -0.02 2.15 16 27 H 0.06 2.31 8.11 -2.38 -0.02 2.29 16 28 H 0.28 15.10 8.31 -92.70 -0.77 14.33 16 29 H 0.12 3.83 7.52 -2.91 -0.02 3.81 16 30 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.16 2.62 7.16 -2.91 -0.02 2.60 16 Total: -1.00 -74.75 293.98 9.16 -65.59 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.17 Total: 10.57 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 3.08 Total: -8.26 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.30 Total: -53.78 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: 0.44 Total: -45.50 kcal Atomic # 9 Polarization: -16.86 SS G_CDS: 2.14 Total: -14.72 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -74.75 9.16 -65.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745307484.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.455 kcal (2) G-P(sol) polarization free energy of solvation -74.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds