Wall clock time and date at job start Tue Mar 31 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48503 * 109.46943 * 269.99623 * 3 2 1 5 5 H 1.48498 * 109.47278 * 29.99643 * 3 2 1 6 6 H 1.48500 * 109.47248 * 149.99594 * 3 2 1 7 7 C 1.38697 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00329 * 185.06090 * 9 7 2 11 11 C 1.38838 * 120.15763 * 354.39850 * 10 9 7 12 12 C 1.38018 * 120.06990 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40588 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32168 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91974 * 359.97438 * 14 13 12 16 16 C 1.47538 * 120.19899 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00164 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99614 * 359.97438 * 16 15 14 19 19 C 1.46508 * 119.99759 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46979 * 180.02562 * 19 18 16 21 21 C 1.41383 * 126.79742 * 95.00109 * 20 19 18 22 22 C 1.35456 * 103.97929 * 179.97438 * 21 20 19 23 23 O 1.34037 * 106.45119 * 359.97438 * 22 21 20 24 24 N 1.20920 * 111.56206 * 359.71350 * 23 22 21 25 25 H 0.97004 * 120.00647 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.96064 * 359.97438 * 11 10 9 27 27 H 1.08006 * 119.79858 * 180.27658 * 12 11 10 28 28 H 1.08006 * 119.84368 * 179.97438 * 13 12 11 29 29 H 1.08005 * 120.04179 * 180.02562 * 14 13 12 30 30 H 0.97000 * 120.00462 * 0.02562 * 18 16 15 31 31 H 1.08998 * 109.46951 * 300.00263 * 19 18 16 32 32 H 1.08996 * 109.46551 * 60.00267 * 19 18 16 33 33 H 1.07994 * 128.01278 * 359.96388 * 21 20 19 34 34 H 1.08002 * 126.77125 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 0.1076 11 6 3.4556 -3.4401 0.0941 12 6 4.2013 -4.5963 0.2037 13 6 3.5746 -5.8259 0.3274 14 6 2.1988 -5.9074 0.3416 15 6 1.4310 -4.7460 0.2315 16 6 -0.0422 -4.8260 0.2466 17 8 -0.7071 -3.8128 0.1501 18 7 -0.6507 -6.0226 0.3664 19 6 -2.1136 -6.1022 0.3808 20 6 -2.5369 -7.5414 0.5241 21 6 -2.8645 -8.2122 1.7248 22 6 -3.1742 -9.4684 1.3237 23 8 -3.0278 -9.4885 -0.0085 24 7 -2.6803 -8.4112 -0.4336 25 1 -0.4851 0.8400 -0.0004 26 1 3.9514 -2.4854 -0.0024 27 1 5.2799 -4.5419 0.1972 28 1 4.1670 -6.7250 0.4122 29 1 1.7151 -6.8682 0.4386 30 1 -0.1203 -6.8311 0.4431 31 1 -2.5006 -5.5246 1.2203 32 1 -2.5086 -5.6979 -0.5512 33 1 -2.8670 -7.8152 2.7291 34 1 -3.4789 -10.2914 1.9532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747335876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:32 Heat of formation + Delta-G solvation = 36.976710 kcal Electronic energy + Delta-G solvation = -21640.123168 eV Core-core repulsion = 18121.934589 eV Total energy + Delta-G solvation = -3518.188579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.15429 -39.60703 -38.13918 -36.35199 -35.38648 -33.14460 -32.34271 -31.84405 -30.58158 -28.93473 -27.15597 -25.35016 -23.37511 -22.96446 -21.60430 -21.06790 -19.96825 -18.31046 -18.00448 -17.72956 -17.38796 -16.18092 -15.59351 -15.13641 -14.69750 -14.53182 -14.21862 -14.16392 -13.77029 -13.73545 -13.39852 -12.82715 -12.63819 -12.44733 -12.38073 -11.71987 -11.49178 -11.30023 -11.13763 -10.90577 -10.79397 -10.52897 -10.46296 -9.88585 -9.58139 -8.89038 -8.87999 -8.65509 -8.28313 -7.31939 -6.44887 -4.04899 1.29232 1.70193 1.93329 2.31333 3.05967 3.11808 3.12817 3.17576 3.71348 3.72565 3.93253 4.01834 4.38329 4.63248 4.94183 5.06200 5.15736 5.16114 5.21493 5.44339 5.51885 5.65068 5.74497 5.77555 5.88661 6.07014 6.11163 6.55417 6.67098 6.81224 6.90550 7.05460 7.22810 7.28573 7.68527 7.90736 8.04998 8.06768 8.94442 9.03580 9.66724 10.68895 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.003988 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.954119 B = 7019.210328 C = 8186.107864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.404 4.404 8 H 0.094 0.906 9 O -0.124 6.124 10 C 0.190 3.810 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.231 4.231 14 C -0.037 4.037 15 C -0.227 4.227 16 C 0.557 3.443 17 O -0.499 6.499 18 N -0.740 5.740 19 C 0.204 3.796 20 C 0.003 3.997 21 C -0.219 4.219 22 C -0.065 4.065 23 O 0.104 5.896 24 N -0.350 5.350 25 H 0.272 0.728 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.394 0.606 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.175 0.825 34 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -16.102 4.398 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.480 4.480 8 H 0.112 0.888 9 O -0.022 6.022 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.056 4.056 15 C -0.232 4.232 16 C 0.347 3.653 17 O -0.372 6.372 18 N -0.397 5.397 19 C 0.079 3.921 20 C -0.156 4.156 21 C -0.241 4.241 22 C -0.146 4.146 23 O 0.035 5.965 24 N -0.051 5.051 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.228 0.772 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.192 0.808 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.361 -14.982 2.960 15.453 hybrid contribution 0.735 0.396 1.025 1.322 sum -1.626 -14.586 3.985 15.208 Atomic orbital electron populations 1.70127 1.05982 1.27755 1.42500 1.25386 0.95803 0.98962 0.96145 0.85723 0.78990 0.79950 0.78815 1.19736 1.20120 1.19051 1.21506 0.91915 0.81106 1.53471 0.88839 1.84170 1.33565 1.10992 1.73435 1.19256 0.89861 0.87344 0.90507 1.21160 0.93351 0.99356 1.11787 1.20898 0.98663 0.92291 0.95007 1.20458 0.94014 0.97154 1.13340 1.20753 0.93895 0.95449 0.95520 1.18777 0.91618 0.92208 1.20589 1.18230 0.87918 0.82458 0.76714 1.90956 1.65714 1.33717 1.46855 1.45853 1.05339 1.09615 1.78909 1.19343 0.82112 0.86616 1.04001 1.23767 1.03782 0.98658 0.89429 1.22835 1.06559 0.93897 1.00830 1.26045 1.03484 1.00384 0.84727 1.84866 1.62424 1.27576 1.21657 1.73930 1.15343 0.92232 1.23624 0.91839 0.85017 0.87137 0.87260 0.87203 0.77199 0.89298 0.89938 0.80801 0.76611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.10 13.67 55.48 0.76 -24.35 16 2 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.40 -11.46 9.49 30.90 0.29 -11.16 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.12 -3.66 7.84 -21.05 -0.16 -3.82 16 10 C 0.19 4.75 6.66 -38.60 -0.26 4.49 16 11 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 12 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 13 C -0.23 -3.83 10.02 -39.61 -0.40 -4.23 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 15 C -0.23 -4.99 5.89 -104.81 -0.62 -5.61 16 16 C 0.56 12.39 7.76 -12.47 -0.10 12.29 16 17 O -0.50 -13.66 15.17 -16.56 -0.25 -13.92 16 18 N -0.74 -12.45 5.50 -62.53 -0.34 -12.80 16 19 C 0.20 3.09 6.26 -5.19 -0.03 3.06 16 20 C 0.00 0.03 6.70 -82.10 -0.55 -0.52 16 21 C -0.22 -2.01 11.12 -39.38 -0.44 -2.45 16 22 C -0.07 -0.47 12.30 29.74 0.37 -0.11 16 23 O 0.10 1.11 11.20 17.19 0.19 1.30 16 24 N -0.35 -4.68 12.07 33.42 0.40 -4.28 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 26 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 27 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 28 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.11 1.53 6.40 -52.48 -0.34 1.19 16 30 H 0.39 5.62 6.49 -40.82 -0.27 5.35 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.22 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -35.74 307.30 -5.60 -41.34 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -2.84 Total: 7.27 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.96 Total: -10.86 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.82 Total: -41.42 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.22 Total: -16.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.74 -5.60 -41.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747335876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.314 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds