Wall clock time and date at job start Tue Mar 31 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48503 * 109.46943 * 269.99623 * 3 2 1 5 5 H 1.48498 * 109.47278 * 29.99643 * 3 2 1 6 6 H 1.48500 * 109.47248 * 149.99594 * 3 2 1 7 7 C 1.38697 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00329 * 185.06090 * 9 7 2 11 11 C 1.38838 * 120.15763 * 354.39850 * 10 9 7 12 12 C 1.38018 * 120.06990 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40588 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32168 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91974 * 359.97438 * 14 13 12 16 16 C 1.47538 * 120.19899 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00164 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99614 * 359.97438 * 16 15 14 19 19 C 1.46508 * 119.99759 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46979 * 180.02562 * 19 18 16 21 21 C 1.41383 * 126.79742 * 95.00109 * 20 19 18 22 22 C 1.35456 * 103.97929 * 179.97438 * 21 20 19 23 23 O 1.34037 * 106.45119 * 359.97438 * 22 21 20 24 24 N 1.20920 * 111.56206 * 359.71350 * 23 22 21 25 25 H 0.97004 * 120.00647 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.96064 * 359.97438 * 11 10 9 27 27 H 1.08006 * 119.79858 * 180.27658 * 12 11 10 28 28 H 1.08006 * 119.84368 * 179.97438 * 13 12 11 29 29 H 1.08005 * 120.04179 * 180.02562 * 14 13 12 30 30 H 0.97000 * 120.00462 * 0.02562 * 18 16 15 31 31 H 1.08998 * 109.46951 * 300.00263 * 19 18 16 32 32 H 1.08996 * 109.46551 * 60.00267 * 19 18 16 33 33 H 1.07994 * 128.01278 * 359.96388 * 21 20 19 34 34 H 1.08002 * 126.77125 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 0.1076 11 6 3.4556 -3.4401 0.0941 12 6 4.2013 -4.5963 0.2037 13 6 3.5746 -5.8259 0.3274 14 6 2.1988 -5.9074 0.3416 15 6 1.4310 -4.7460 0.2315 16 6 -0.0422 -4.8260 0.2466 17 8 -0.7071 -3.8128 0.1501 18 7 -0.6507 -6.0226 0.3664 19 6 -2.1136 -6.1022 0.3808 20 6 -2.5369 -7.5414 0.5241 21 6 -2.8645 -8.2122 1.7248 22 6 -3.1742 -9.4684 1.3237 23 8 -3.0278 -9.4885 -0.0085 24 7 -2.6803 -8.4112 -0.4336 25 1 -0.4851 0.8400 -0.0004 26 1 3.9514 -2.4854 -0.0024 27 1 5.2799 -4.5419 0.1972 28 1 4.1670 -6.7250 0.4122 29 1 1.7151 -6.8682 0.4386 30 1 -0.1203 -6.8311 0.4431 31 1 -2.5006 -5.5246 1.2203 32 1 -2.5086 -5.6979 -0.5512 33 1 -2.8670 -7.8152 2.7291 34 1 -3.4789 -10.2914 1.9532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747335876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:31 Heat of formation + Delta-G solvation = 10.593228 kcal Electronic energy + Delta-G solvation = -21641.267241 eV Core-core repulsion = 18121.934589 eV Total energy + Delta-G solvation = -3519.332652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.01906 -41.32555 -39.88501 -38.05819 -36.69033 -34.44318 -34.28903 -32.70028 -32.10052 -30.59602 -28.50288 -27.30818 -24.61296 -24.11159 -23.14315 -22.13354 -21.60113 -19.87983 -19.53979 -18.66809 -18.61150 -17.85608 -17.09723 -16.44953 -16.36070 -15.96982 -15.94010 -15.60231 -15.33192 -15.29852 -14.44076 -14.37516 -14.26312 -13.93181 -13.56124 -13.55154 -13.00623 -12.72374 -12.54372 -12.39086 -12.35463 -12.12293 -11.55682 -11.35760 -10.83883 -10.67902 -10.58416 -10.25490 -9.83369 -9.06144 -8.45055 -6.16317 0.08539 0.54093 0.70552 1.08811 1.32765 1.44258 1.51982 2.02959 2.15801 2.29154 2.47377 2.86212 3.02525 3.20485 3.43780 3.55523 3.89394 4.04948 4.16597 4.26599 4.34474 4.43676 4.49916 4.56190 4.64400 4.82017 4.95003 5.06120 5.10388 5.11300 5.32516 5.45724 5.58527 5.67474 5.95161 6.14312 6.54509 6.94038 7.28983 7.36181 7.78814 8.75415 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.003988 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.954119 B = 7019.210328 C = 8186.107864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.021 4.021 3 Si 1.023 2.977 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.429 4.429 8 H 0.108 0.892 9 O -0.188 6.188 10 C 0.151 3.849 11 C -0.256 4.256 12 C -0.038 4.038 13 C -0.200 4.200 14 C -0.030 4.030 15 C -0.246 4.246 16 C 0.552 3.448 17 O -0.564 6.564 18 N -0.714 5.714 19 C 0.205 3.795 20 C -0.018 4.018 21 C -0.228 4.228 22 C -0.034 4.034 23 O 0.107 5.893 24 N -0.384 5.384 25 H 0.271 0.729 26 H 0.126 0.874 27 H 0.156 0.844 28 H 0.164 0.836 29 H 0.154 0.846 30 H 0.409 0.591 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.194 0.806 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -20.177 5.677 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.221 4.221 3 Si 0.841 3.159 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.505 4.505 8 H 0.125 0.875 9 O -0.090 6.090 10 C 0.096 3.904 11 C -0.275 4.275 12 C -0.056 4.056 13 C -0.219 4.219 14 C -0.049 4.049 15 C -0.251 4.251 16 C 0.342 3.658 17 O -0.442 6.442 18 N -0.371 5.371 19 C 0.081 3.919 20 C -0.175 4.175 21 C -0.250 4.250 22 C -0.115 4.115 23 O 0.036 5.964 24 N -0.085 5.085 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.174 0.826 28 H 0.182 0.818 29 H 0.171 0.829 30 H 0.247 0.753 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.212 0.788 34 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 0.233 -19.168 4.241 19.633 hybrid contribution 0.057 1.096 0.680 1.291 sum 0.290 -18.072 4.921 18.732 Atomic orbital electron populations 1.70320 1.08386 1.28631 1.46715 1.26767 0.96737 1.03124 0.95441 0.84553 0.77916 0.74118 0.79313 1.18739 1.19698 1.17012 1.22062 0.92764 0.81756 1.53896 0.87467 1.84174 1.35211 1.12186 1.77476 1.20047 0.91693 0.87443 0.91226 1.21316 0.92220 1.01049 1.12946 1.21446 1.00804 0.91163 0.92160 1.21167 0.93770 0.98563 1.08354 1.21250 0.94603 0.95385 0.93649 1.19210 0.91971 0.93015 1.20864 1.18523 0.88382 0.82924 0.75940 1.90936 1.67020 1.36275 1.50001 1.45584 1.06334 1.08508 1.76635 1.19229 0.80804 0.89114 1.02750 1.23484 1.05540 0.97224 0.91266 1.23096 1.06989 0.94365 1.00542 1.26978 1.00308 1.00939 0.83266 1.84824 1.61729 1.26290 1.23548 1.73940 1.16736 0.93183 1.24684 0.91992 0.85677 0.82638 0.81837 0.82900 0.75316 0.89412 0.92404 0.78833 0.71327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -59.37 13.67 21.62 0.30 -59.08 16 2 C -0.02 -1.27 5.49 84.85 0.47 -0.81 16 3 Si 1.02 44.27 29.55 68.60 2.03 46.30 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.43 -26.05 9.49 67.93 0.64 -25.41 16 8 H 0.11 5.82 5.21 -2.91 -0.02 5.80 16 9 O -0.19 -12.06 7.84 0.84 0.01 -12.05 16 10 C 0.15 7.88 6.66 22.91 0.15 8.03 16 11 C -0.26 -10.98 9.16 22.36 0.20 -10.78 16 12 C -0.04 -1.18 10.03 22.30 0.22 -0.95 16 13 C -0.20 -5.46 10.02 22.25 0.22 -5.23 16 14 C -0.03 -0.95 9.53 22.52 0.21 -0.74 16 15 C -0.25 -10.92 5.89 -19.99 -0.12 -11.04 16 16 C 0.55 25.76 7.76 86.70 0.67 26.44 16 17 O -0.56 -33.68 15.17 16.92 0.26 -33.42 16 18 N -0.71 -24.32 5.50 -470.00 -2.58 -26.91 16 19 C 0.21 6.52 6.26 85.63 0.54 7.06 16 20 C -0.02 -0.44 6.70 43.58 0.29 -0.15 16 21 C -0.23 -3.55 11.12 22.40 0.25 -3.31 16 22 C -0.03 -0.35 12.30 67.18 0.83 0.47 16 23 O 0.11 1.99 11.20 71.67 0.80 2.79 16 24 N -0.38 -9.89 12.07 -49.56 -0.60 -10.49 16 25 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 26 H 0.13 5.41 5.64 -2.91 -0.02 5.39 16 27 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.15 3.43 6.40 -2.91 -0.02 3.41 16 30 H 0.41 10.97 6.49 -92.71 -0.60 10.37 16 31 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.27 -0.42 8.06 -2.91 -0.02 -0.44 16 Total: -1.00 -90.98 307.30 5.36 -85.62 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.57 Total: 23.65 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 4.59 Total: -16.41 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -2.89 Total: -96.47 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: 1.07 Total: -42.69 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -90.98 5.36 -85.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747335876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.213 kcal (2) G-P(sol) polarization free energy of solvation -90.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds