Wall clock time and date at job start Tue Mar 31 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00000 * 2 1 4 4 H 1.48501 * 109.47192 * 270.00218 * 3 2 1 5 5 H 1.48503 * 109.47233 * 29.99616 * 3 2 1 6 6 H 1.48497 * 109.47100 * 149.99939 * 3 2 1 7 7 C 1.38813 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99755 * 180.02562 * 7 2 1 9 9 O 1.34848 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.34742 * 116.99697 * 179.97438 * 9 7 2 11 11 O 1.21501 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.47664 * 119.99602 * 179.97438 * 10 9 7 13 13 C 1.39674 * 120.14968 * 179.97438 * 12 10 9 14 14 C 1.37929 * 119.84223 * 180.27933 * 13 12 10 15 15 C 1.38381 * 120.15569 * 359.46892 * 14 13 12 16 16 C 1.50698 * 119.84512 * 180.25843 * 15 14 13 17 17 C 1.53000 * 109.47143 * 270.29299 * 16 15 14 18 18 C 1.52999 * 109.47308 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.47147 * 60.00130 * 18 17 16 20 20 F 1.39902 * 109.47053 * 180.02562 * 18 17 16 21 21 F 1.39903 * 109.46831 * 300.00217 * 18 17 16 22 22 C 1.38382 * 120.30547 * 0.55461 * 15 14 13 23 23 C 1.37933 * 120.15420 * 359.70630 * 22 15 14 24 24 H 0.97002 * 119.99748 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.07534 * 359.97438 * 13 12 10 26 26 H 1.07998 * 119.92376 * 179.74390 * 14 13 12 27 27 H 1.08992 * 109.47539 * 30.29841 * 16 15 14 28 28 H 1.09006 * 109.46783 * 150.29873 * 16 15 14 29 29 H 1.09009 * 109.47477 * 300.00624 * 17 16 15 30 30 H 1.09005 * 109.46665 * 60.00060 * 17 16 15 31 31 H 1.07997 * 119.91950 * 179.72116 * 22 15 14 32 32 H 1.08006 * 120.07420 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0082 -1.2021 0.0005 8 1 3.0882 -1.2021 0.0010 9 8 1.3339 -2.3700 0.0005 10 6 2.0678 -3.5000 0.0005 11 8 3.2812 -3.4363 0.0001 12 6 1.3974 -4.8156 0.0011 13 6 2.1550 -5.9891 0.0006 14 6 1.5222 -7.2146 -0.0047 15 6 0.1401 -7.2834 0.0016 16 6 -0.5440 -8.6261 0.0016 17 6 -0.7757 -9.0805 -1.4408 18 6 -1.4708 -10.4435 -1.4408 19 9 -2.7002 -10.3399 -0.7814 20 9 -1.6821 -10.8592 -2.7598 21 9 -0.6650 -11.3778 -0.7812 22 6 -0.6167 -6.1248 0.0017 23 6 0.0029 -4.8925 0.0016 24 1 -0.4850 0.8401 -0.0004 25 1 3.2338 -5.9368 -0.0007 26 1 2.1067 -8.1227 -0.0093 27 1 0.0840 -9.3539 0.5154 28 1 -1.5019 -8.5458 0.5156 29 1 -1.4038 -8.3527 -1.9547 30 1 0.1823 -9.1607 -1.9547 31 1 -1.6949 -6.1858 0.0021 32 1 -0.5890 -3.9891 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751885792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:40 Heat of formation + Delta-G solvation = -225.527188 kcal Electronic energy + Delta-G solvation = -21540.835492 eV Core-core repulsion = 17437.114398 eV Total energy + Delta-G solvation = -4103.721093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.34966 -47.84887 -47.82618 -39.63423 -38.42576 -35.35753 -34.59160 -32.26460 -30.77471 -30.58757 -26.74587 -25.29001 -23.23213 -22.42065 -21.79935 -20.05665 -18.80061 -18.63313 -17.80476 -17.62844 -17.24523 -15.70736 -15.35113 -14.92986 -14.72176 -14.67599 -14.56233 -14.32848 -14.25174 -14.00365 -13.99352 -13.89328 -13.68031 -13.27935 -13.17603 -12.66634 -12.19025 -11.98402 -11.69156 -11.61769 -11.25066 -11.17102 -10.78514 -10.51701 -10.47114 -9.90416 -9.14017 -8.76617 -8.67766 -8.54344 -6.52188 -4.14550 1.08984 1.61036 2.52009 3.07702 3.14518 3.20632 3.36056 3.55227 3.79772 3.79918 3.87192 4.27316 4.48269 4.60427 4.73701 4.79066 5.06077 5.09102 5.14458 5.16994 5.34786 5.60929 5.69131 5.80237 6.01585 6.17868 6.33578 6.64219 6.68891 6.96584 7.12182 7.31795 7.85814 8.63782 8.96658 9.76284 10.65394 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.038500 B = 0.002847 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.103978 B = 9831.347384 C =10243.334056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.375 4.375 8 H 0.098 0.902 9 O -0.204 6.204 10 C 0.428 3.572 11 O -0.554 6.554 12 C -0.083 4.083 13 C -0.070 4.070 14 C -0.127 4.127 15 C -0.082 4.082 16 C -0.081 4.081 17 C -0.162 4.162 18 C 0.451 3.549 19 F -0.184 7.184 20 F -0.186 7.186 21 F -0.185 7.185 22 C -0.125 4.125 23 C -0.070 4.070 24 H 0.272 0.728 25 H 0.134 0.866 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -18.318 -1.830 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.451 4.451 8 H 0.116 0.884 9 O -0.111 6.111 10 C 0.277 3.723 11 O -0.453 6.453 12 C -0.085 4.085 13 C -0.088 4.088 14 C -0.145 4.145 15 C -0.082 4.082 16 C -0.118 4.118 17 C -0.201 4.201 18 C 0.397 3.603 19 F -0.166 7.166 20 F -0.168 7.168 21 F -0.166 7.166 22 C -0.143 4.143 23 C -0.089 4.089 24 H 0.082 0.918 25 H 0.152 0.848 26 H 0.143 0.857 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.538 -18.144 -1.826 18.792 hybrid contribution 0.274 0.595 -0.045 0.657 sum -4.264 -17.549 -1.871 18.156 Atomic orbital electron populations 1.69969 1.06091 1.28010 1.45337 1.25393 0.95867 0.98996 0.96080 0.85633 0.79101 0.79426 0.78851 1.19753 1.20210 1.18965 1.21328 0.92595 0.79752 1.51389 0.88431 1.83886 1.39221 1.13290 1.74665 1.20787 0.85904 0.85508 0.80138 1.90621 1.15133 1.87859 1.51700 1.19489 0.93700 0.91787 1.03494 1.21227 1.00635 0.90739 0.96221 1.20873 0.93641 0.97413 1.02527 1.19670 0.93684 0.93905 1.00960 1.20546 1.02215 0.95121 0.93905 1.22949 1.03878 0.91598 1.01624 1.20689 0.77445 0.88857 0.73272 1.93185 1.45767 1.96379 1.81228 1.93192 1.95127 1.91953 1.36500 1.93182 1.73184 1.69025 1.81252 1.20989 0.99781 0.91630 1.01873 1.21638 0.93895 0.98559 0.94781 0.91840 0.84819 0.85715 0.89632 0.89546 0.86849 0.86936 0.85642 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.44 13.67 55.49 0.76 -23.68 16 2 C 0.04 1.15 5.50 -17.52 -0.10 1.05 16 3 Si 0.95 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.37 -10.96 9.65 30.94 0.30 -10.67 16 8 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.20 -5.80 8.99 -21.65 -0.19 -5.99 16 10 C 0.43 10.87 7.84 34.58 0.27 11.14 16 11 O -0.55 -15.17 15.59 -19.27 -0.30 -15.47 16 12 C -0.08 -1.65 5.87 -104.98 -0.62 -2.27 16 13 C -0.07 -1.15 9.60 -39.16 -0.38 -1.52 16 14 C -0.13 -1.60 9.68 -39.64 -0.38 -1.98 16 15 C -0.08 -0.95 5.14 -104.52 -0.54 -1.49 16 16 C -0.08 -0.67 5.09 -27.88 -0.14 -0.82 16 17 C -0.16 -1.20 5.24 -26.73 -0.14 -1.34 16 18 C 0.45 3.82 3.16 37.16 0.12 3.94 16 19 F -0.18 -1.72 16.80 2.25 0.04 -1.68 16 20 F -0.19 -1.75 17.32 2.25 0.04 -1.72 16 21 F -0.18 -1.70 16.80 2.25 0.04 -1.66 16 22 C -0.12 -1.65 9.68 -39.64 -0.38 -2.04 16 23 C -0.07 -1.22 9.62 -39.16 -0.38 -1.60 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.13 2.20 7.65 -52.49 -0.40 1.80 16 26 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 27 H 0.09 0.65 7.74 -51.93 -0.40 0.25 16 28 H 0.09 0.67 7.74 -51.93 -0.40 0.27 16 29 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.14 2.66 7.61 -52.48 -0.40 2.26 16 LS Contribution 304.41 15.07 4.59 4.59 Total: -1.00 -32.23 304.41 -5.21 -37.44 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -2.79 Total: -0.07 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.37 Total: -7.59 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.76 Total: -23.68 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.50 Total: -21.46 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.11 Total: -5.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.23 -5.21 -37.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751885792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.087 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds