Wall clock time and date at job start Tue Mar 31 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00000 * 2 1 4 4 H 1.48501 * 109.47192 * 270.00218 * 3 2 1 5 5 H 1.48503 * 109.47233 * 29.99616 * 3 2 1 6 6 H 1.48497 * 109.47100 * 149.99939 * 3 2 1 7 7 C 1.38813 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99755 * 180.02562 * 7 2 1 9 9 O 1.34848 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.34742 * 116.99697 * 179.97438 * 9 7 2 11 11 O 1.21501 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.47664 * 119.99602 * 179.97438 * 10 9 7 13 13 C 1.39674 * 120.14968 * 179.97438 * 12 10 9 14 14 C 1.37929 * 119.84223 * 180.27933 * 13 12 10 15 15 C 1.38381 * 120.15569 * 359.46892 * 14 13 12 16 16 C 1.50698 * 119.84512 * 180.25843 * 15 14 13 17 17 C 1.53000 * 109.47143 * 270.29299 * 16 15 14 18 18 C 1.52999 * 109.47308 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.47147 * 60.00130 * 18 17 16 20 20 F 1.39902 * 109.47053 * 180.02562 * 18 17 16 21 21 F 1.39903 * 109.46831 * 300.00217 * 18 17 16 22 22 C 1.38382 * 120.30547 * 0.55461 * 15 14 13 23 23 C 1.37933 * 120.15420 * 359.70630 * 22 15 14 24 24 H 0.97002 * 119.99748 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.07534 * 359.97438 * 13 12 10 26 26 H 1.07998 * 119.92376 * 179.74390 * 14 13 12 27 27 H 1.08992 * 109.47539 * 30.29841 * 16 15 14 28 28 H 1.09006 * 109.46783 * 150.29873 * 16 15 14 29 29 H 1.09009 * 109.47477 * 300.00624 * 17 16 15 30 30 H 1.09005 * 109.46665 * 60.00060 * 17 16 15 31 31 H 1.07997 * 119.91950 * 179.72116 * 22 15 14 32 32 H 1.08006 * 120.07420 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0082 -1.2021 0.0005 8 1 3.0882 -1.2021 0.0010 9 8 1.3339 -2.3700 0.0005 10 6 2.0678 -3.5000 0.0005 11 8 3.2812 -3.4363 0.0001 12 6 1.3974 -4.8156 0.0011 13 6 2.1550 -5.9891 0.0006 14 6 1.5222 -7.2146 -0.0047 15 6 0.1401 -7.2834 0.0016 16 6 -0.5440 -8.6261 0.0016 17 6 -0.7757 -9.0805 -1.4408 18 6 -1.4708 -10.4435 -1.4408 19 9 -2.7002 -10.3399 -0.7814 20 9 -1.6821 -10.8592 -2.7598 21 9 -0.6650 -11.3778 -0.7812 22 6 -0.6167 -6.1248 0.0017 23 6 0.0029 -4.8925 0.0016 24 1 -0.4850 0.8401 -0.0004 25 1 3.2338 -5.9368 -0.0007 26 1 2.1067 -8.1227 -0.0093 27 1 0.0840 -9.3539 0.5154 28 1 -1.5019 -8.5458 0.5156 29 1 -1.4038 -8.3527 -1.9547 30 1 0.1823 -9.1607 -1.9547 31 1 -1.6949 -6.1858 0.0021 32 1 -0.5890 -3.9891 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751885792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:40 Heat of formation + Delta-G solvation = -243.788157 kcal Electronic energy + Delta-G solvation = -21541.627347 eV Core-core repulsion = 17437.114398 eV Total energy + Delta-G solvation = -4104.512948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.01242 -48.52575 -48.49116 -41.30390 -39.96700 -37.32290 -35.60983 -34.36412 -31.98935 -31.69609 -28.12962 -26.92792 -24.34631 -23.63716 -22.86989 -21.53230 -19.93111 -19.45394 -19.33098 -18.99002 -18.27200 -17.35227 -16.61109 -16.50824 -16.19648 -16.06923 -15.49725 -15.43372 -15.32299 -14.94232 -14.69875 -14.66196 -14.56236 -14.32005 -14.24736 -14.18959 -13.66534 -13.33512 -13.09805 -12.86643 -12.41837 -12.39217 -12.21128 -12.17852 -12.07448 -11.80205 -11.16384 -10.74669 -9.96194 -9.81513 -8.60238 -6.37582 -0.24757 0.41335 1.32527 1.35284 1.50206 1.73077 1.91023 2.08355 2.70424 2.72101 2.91371 3.00738 3.16991 3.18563 3.81080 3.86504 4.03790 4.11516 4.11759 4.35450 4.42586 4.57555 4.62157 4.84470 4.86313 5.06201 5.08398 5.11833 5.36938 5.49876 5.55706 5.76957 5.93173 6.56521 6.84267 7.68334 8.60313 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.038500 B = 0.002847 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.103978 B = 9831.347384 C =10243.334056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.002 4.002 3 Si 1.020 2.980 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.264 1.264 7 C -0.423 4.423 8 H 0.082 0.918 9 O -0.232 6.232 10 C 0.428 3.572 11 O -0.585 6.585 12 C -0.127 4.127 13 C -0.073 4.073 14 C -0.112 4.112 15 C -0.051 4.051 16 C -0.078 4.078 17 C -0.159 4.159 18 C 0.454 3.546 19 F -0.190 7.190 20 F -0.193 7.193 21 F -0.189 7.189 22 C -0.116 4.116 23 C -0.080 4.080 24 H 0.281 0.719 25 H 0.127 0.873 26 H 0.167 0.833 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 -20.421 -1.898 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.203 4.203 3 Si 0.838 3.162 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.499 4.499 8 H 0.099 0.901 9 O -0.140 6.140 10 C 0.278 3.722 11 O -0.485 6.485 12 C -0.128 4.128 13 C -0.091 4.091 14 C -0.130 4.130 15 C -0.052 4.052 16 C -0.115 4.115 17 C -0.197 4.197 18 C 0.400 3.600 19 F -0.171 7.171 20 F -0.175 7.175 21 F -0.170 7.170 22 C -0.133 4.133 23 C -0.099 4.099 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.185 0.815 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.176 0.824 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.240 -20.278 -1.896 21.030 hybrid contribution 0.426 0.936 -0.024 1.029 sum -4.814 -19.342 -1.920 20.024 Atomic orbital electron populations 1.70046 1.07644 1.29659 1.45882 1.26589 0.96954 1.02289 0.94425 0.84604 0.77691 0.74259 0.79660 1.18293 1.18086 1.18826 1.21504 0.92316 0.81127 1.54919 0.90070 1.83915 1.39914 1.14000 1.76173 1.21973 0.85942 0.86798 0.77501 1.90560 1.16589 1.88578 1.52736 1.19366 0.94973 0.89713 1.08789 1.21313 1.00350 0.91093 0.96355 1.21286 0.94438 0.97038 1.00192 1.20061 0.93328 0.95049 0.96718 1.20613 1.02903 0.93019 0.95002 1.22938 1.04707 0.91004 1.01003 1.20792 0.77224 0.89121 0.72832 1.93179 1.46246 1.96398 1.81305 1.93183 1.95164 1.92064 1.37041 1.93180 1.73214 1.69334 1.81285 1.21292 1.01540 0.90237 1.00266 1.21508 0.92702 0.99690 0.95950 0.90913 0.85522 0.81520 0.87788 0.88217 0.86007 0.85627 0.82378 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.73 13.67 21.63 0.30 -52.44 16 2 C 0.00 -0.09 5.50 84.89 0.47 0.38 16 3 Si 1.02 43.50 29.55 68.60 2.03 45.53 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.42 -26.31 9.65 67.96 0.66 -25.66 16 8 H 0.08 5.13 6.86 -2.91 -0.02 5.11 16 9 O -0.23 -14.17 8.99 11.31 0.10 -14.07 16 10 C 0.43 23.19 7.84 70.31 0.55 23.75 16 11 O -0.58 -34.07 15.59 19.83 0.31 -33.76 16 12 C -0.13 -5.23 5.87 -20.10 -0.12 -5.34 16 13 C -0.07 -2.35 9.60 22.54 0.22 -2.13 16 14 C -0.11 -2.41 9.68 22.23 0.22 -2.19 16 15 C -0.05 -0.97 5.14 -19.80 -0.10 -1.08 16 16 C -0.08 -0.89 5.09 29.85 0.15 -0.74 16 17 C -0.16 -1.61 5.24 30.59 0.16 -1.45 16 18 C 0.45 6.05 3.16 71.98 0.23 6.28 16 19 F -0.19 -2.92 16.80 44.97 0.76 -2.16 16 20 F -0.19 -3.09 17.32 44.97 0.78 -2.32 16 21 F -0.19 -2.78 16.80 44.97 0.76 -2.02 16 22 C -0.12 -2.76 9.68 22.23 0.22 -2.54 16 23 C -0.08 -2.82 9.62 22.54 0.22 -2.60 16 24 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 25 H 0.13 4.20 7.65 -2.91 -0.02 4.18 16 26 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 27 H 0.10 0.94 7.74 -2.39 -0.02 0.92 16 28 H 0.10 1.00 7.74 -2.38 -0.02 0.98 16 29 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.12 4.66 7.61 -2.91 -0.02 4.64 16 Total: -1.00 -75.98 304.41 9.04 -66.94 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.16 Total: 7.64 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 2.86 Total: -13.33 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.30 Total: -52.44 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: 0.41 Total: -47.83 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.29 Total: -6.50 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -75.98 9.04 -66.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751885792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.847 kcal (2) G-P(sol) polarization free energy of solvation -75.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds