Wall clock time and date at job start Tue Mar 31 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86807 * 119.99697 * 2 1 4 4 H 1.48495 * 109.47006 * 270.00193 * 3 2 1 5 5 H 1.48502 * 109.47142 * 30.00280 * 3 2 1 6 6 H 1.48503 * 109.46986 * 150.00183 * 3 2 1 7 7 C 1.38947 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00091 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00188 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99585 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00074 * 180.02562 * 10 9 7 13 13 O 1.45197 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.34795 * 116.99967 * 179.97438 * 13 12 10 15 15 O 1.21536 * 119.99803 * 0.02562 * 14 13 12 16 16 C 1.47225 * 120.00048 * 180.02562 * 14 13 12 17 17 C 1.39346 * 120.32259 * 0.02562 * 16 14 13 18 18 C 1.38240 * 120.24821 * 179.97438 * 17 16 14 19 19 C 1.38086 * 120.82007 * 359.65259 * 18 17 16 20 20 C 1.38933 * 120.27470 * 0.56978 * 19 18 17 21 21 N 1.37892 * 133.35894 * 179.26936 * 20 19 18 22 22 H 0.97000 * 125.56899 * 0.02562 * 21 20 19 23 23 C 1.36677 * 108.86488 * 180.02562 * 21 20 19 24 24 C 1.34455 * 109.62647 * 359.97438 * 23 21 20 25 25 C 1.40627 * 119.68010 * 359.58767 * 20 19 18 26 26 H 0.96989 * 120.00125 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99782 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.47180 * 60.00317 * 12 10 9 29 29 H 1.09004 * 109.46909 * 300.00304 * 12 10 9 30 30 H 1.08001 * 119.87369 * 359.97438 * 17 16 14 31 31 H 1.08003 * 119.58690 * 180.02562 * 18 17 16 32 32 H 1.08002 * 119.86172 * 179.88731 * 19 18 17 33 33 H 1.07999 * 125.19106 * 179.97438 * 23 21 20 34 34 H 1.08002 * 126.07526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3704 0.0000 11 8 3.4475 -3.4208 0.0000 12 6 5.5609 -2.3703 0.0000 13 8 6.0450 -3.7392 -0.0006 14 6 7.3813 -3.9158 -0.0012 15 8 8.1216 -2.9519 -0.0008 16 6 7.9441 -5.2762 -0.0024 17 6 7.1016 -6.3861 -0.0035 18 6 7.6317 -7.6628 -0.0052 19 6 8.9982 -7.8614 -0.0130 20 6 9.8640 -6.7749 -0.0074 21 7 11.2380 -6.6592 0.0002 22 1 11.8664 -7.3982 0.0028 23 6 11.5699 -5.3334 0.0036 24 6 10.4511 -4.5877 -0.0022 25 6 9.3424 -5.4689 -0.0025 26 1 -0.4850 0.8399 0.0004 27 1 3.8649 -0.3632 -0.0004 28 1 5.9243 -1.8565 0.8900 29 1 5.9242 -1.8564 -0.8900 30 1 6.0304 -6.2483 -0.0030 31 1 6.9688 -8.5154 -0.0064 32 1 9.3956 -8.8657 -0.0124 33 1 12.5772 -4.9440 0.0100 34 1 10.4060 -3.5087 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757053694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:54 Heat of formation + Delta-G solvation = -49.955693 kcal Electronic energy + Delta-G solvation = -21273.292095 eV Core-core repulsion = 17751.333845 eV Total energy + Delta-G solvation = -3521.958250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.70960 -40.03248 -38.25818 -36.96151 -36.00548 -34.00783 -32.40968 -31.75169 -30.07663 -29.15196 -28.29747 -24.80791 -23.86998 -22.04450 -21.55364 -20.62505 -19.57966 -18.58216 -18.29039 -17.34094 -16.34981 -16.26504 -16.02244 -15.60597 -15.14023 -14.79009 -14.77072 -14.29391 -14.00289 -13.64443 -13.14721 -12.99494 -12.81789 -12.43748 -12.25228 -12.15764 -11.83337 -11.74247 -11.62342 -11.22432 -10.61148 -10.40823 -10.25986 -10.03740 -10.00776 -9.62982 -8.60819 -8.47145 -8.24758 -7.97045 -6.35182 -3.87815 0.39614 1.37377 2.48111 2.68324 2.69638 2.87639 3.02721 3.07180 3.15501 3.61343 3.80338 4.07754 4.38929 4.62563 4.67832 4.83251 4.97037 5.08016 5.12965 5.16069 5.34968 5.42604 5.63116 5.63963 5.73712 5.76276 5.92819 6.26121 6.26432 6.41648 6.47567 6.68377 6.84854 7.22032 7.49767 7.95283 8.06041 8.52737 8.88186 9.34585 9.70926 10.77242 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035285 B = 0.003165 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.350040 B = 8844.566791 C = 9622.766538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.122 0.878 9 N -0.581 5.581 10 C 0.449 3.551 11 O -0.557 6.557 12 C 0.059 3.941 13 O -0.321 6.321 14 C 0.506 3.494 15 O -0.509 6.509 16 C -0.086 4.086 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.091 4.091 20 C 0.070 3.930 21 N -0.591 5.591 22 H 0.418 0.582 23 C 0.051 3.949 24 C -0.194 4.194 25 C -0.049 4.049 26 H 0.275 0.725 27 H 0.373 0.627 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.173 0.827 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.878 -11.808 -0.013 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.140 0.860 9 N -0.221 5.221 10 C 0.234 3.766 11 O -0.438 6.438 12 C -0.019 4.019 13 O -0.236 6.236 14 C 0.352 3.648 15 O -0.400 6.400 16 C -0.088 4.088 17 C -0.088 4.088 18 C -0.137 4.137 19 C -0.111 4.111 20 C -0.036 4.036 21 N -0.194 5.194 22 H 0.255 0.745 23 C -0.076 4.076 24 C -0.218 4.218 25 C -0.054 4.054 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.142 0.858 33 H 0.190 0.810 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 23.544 -12.176 -0.012 26.507 hybrid contribution 0.961 1.285 0.016 1.605 sum 24.506 -10.892 0.004 26.817 Atomic orbital electron populations 1.69612 1.05649 1.27705 1.48632 1.25031 0.95511 0.98040 0.97333 0.86681 0.79886 0.83883 0.79078 1.19429 1.20008 1.19312 1.19426 0.78710 0.96857 1.48522 0.86014 1.42035 1.07609 1.05728 1.66733 1.19212 0.86970 0.85107 0.85262 1.90597 1.69081 1.30724 1.53427 1.22729 0.94962 0.80570 1.03596 1.86615 1.22622 1.30982 1.83392 1.21098 0.80880 0.89801 0.73064 1.90779 1.60535 1.42387 1.46261 1.18489 0.91395 0.90269 1.08613 1.21517 1.00911 0.91196 0.95215 1.20831 0.93877 0.97314 1.01713 1.20253 0.92595 0.96382 1.01882 1.18127 0.83477 0.95117 1.06916 1.41814 1.05008 1.07743 1.64799 0.74491 1.22025 0.99976 0.82013 1.03594 1.20986 0.89940 1.00399 1.10507 1.17940 0.91802 0.92842 1.02825 0.91439 0.79388 0.89405 0.89403 0.83519 0.84608 0.85768 0.80952 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.96 55.50 0.77 -24.63 16 2 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.27 27.74 -169.99 -4.71 14.56 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 8 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 9 N -0.58 -13.99 5.09 -10.96 -0.06 -14.05 16 10 C 0.45 10.60 7.86 -10.98 -0.09 10.51 16 11 O -0.56 -15.41 16.08 -14.11 -0.23 -15.63 16 12 C 0.06 1.11 5.96 36.01 0.21 1.32 16 13 O -0.32 -6.10 9.00 -47.43 -0.43 -6.53 16 14 C 0.51 8.74 7.89 34.38 0.27 9.01 16 15 O -0.51 -9.21 14.76 -19.29 -0.28 -9.49 16 16 C -0.09 -1.28 5.90 -104.73 -0.62 -1.90 16 17 C -0.07 -0.90 9.60 -39.17 -0.38 -1.28 16 18 C -0.12 -1.18 9.99 -39.64 -0.40 -1.58 16 19 C -0.09 -0.82 10.05 -39.38 -0.40 -1.22 16 20 C 0.07 0.75 7.26 -83.98 -0.61 0.14 16 21 N -0.59 -4.47 6.14 -10.65 -0.07 -4.53 16 22 H 0.42 1.63 8.96 -40.82 -0.37 1.26 16 23 C 0.05 0.42 11.83 -16.73 -0.20 0.22 16 24 C -0.19 -2.32 10.03 -39.63 -0.40 -2.72 16 25 C -0.05 -0.66 6.01 -106.60 -0.64 -1.30 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.15 1.98 7.60 -52.49 -0.40 1.58 16 31 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.16 1.98 7.00 -52.49 -0.37 1.61 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -35.45 307.01 -6.89 -42.34 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.04 Total: 9.83 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -3.48 Total: 3.50 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.65 Total: -43.21 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.94 Total: -31.65 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.45 -6.89 -42.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757053694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.614 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds