Wall clock time and date at job start Tue Mar 31 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86807 * 119.99697 * 2 1 4 4 H 1.48495 * 109.47006 * 270.00193 * 3 2 1 5 5 H 1.48502 * 109.47142 * 30.00280 * 3 2 1 6 6 H 1.48503 * 109.46986 * 150.00183 * 3 2 1 7 7 C 1.38947 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00091 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00188 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99585 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00074 * 180.02562 * 10 9 7 13 13 O 1.45197 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.34795 * 116.99967 * 179.97438 * 13 12 10 15 15 O 1.21536 * 119.99803 * 0.02562 * 14 13 12 16 16 C 1.47225 * 120.00048 * 180.02562 * 14 13 12 17 17 C 1.39346 * 120.32259 * 0.02562 * 16 14 13 18 18 C 1.38240 * 120.24821 * 179.97438 * 17 16 14 19 19 C 1.38086 * 120.82007 * 359.65259 * 18 17 16 20 20 C 1.38933 * 120.27470 * 0.56978 * 19 18 17 21 21 N 1.37892 * 133.35894 * 179.26936 * 20 19 18 22 22 H 0.97000 * 125.56899 * 0.02562 * 21 20 19 23 23 C 1.36677 * 108.86488 * 180.02562 * 21 20 19 24 24 C 1.34455 * 109.62647 * 359.97438 * 23 21 20 25 25 C 1.40627 * 119.68010 * 359.58767 * 20 19 18 26 26 H 0.96989 * 120.00125 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99782 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.47180 * 60.00317 * 12 10 9 29 29 H 1.09004 * 109.46909 * 300.00304 * 12 10 9 30 30 H 1.08001 * 119.87369 * 359.97438 * 17 16 14 31 31 H 1.08003 * 119.58690 * 180.02562 * 18 17 16 32 32 H 1.08002 * 119.86172 * 179.88731 * 19 18 17 33 33 H 1.07999 * 125.19106 * 179.97438 * 23 21 20 34 34 H 1.08002 * 126.07526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3704 0.0000 11 8 3.4475 -3.4208 0.0000 12 6 5.5609 -2.3703 0.0000 13 8 6.0450 -3.7392 -0.0006 14 6 7.3813 -3.9158 -0.0012 15 8 8.1216 -2.9519 -0.0008 16 6 7.9441 -5.2762 -0.0024 17 6 7.1016 -6.3861 -0.0035 18 6 7.6317 -7.6628 -0.0052 19 6 8.9982 -7.8614 -0.0130 20 6 9.8640 -6.7749 -0.0074 21 7 11.2380 -6.6592 0.0002 22 1 11.8664 -7.3982 0.0028 23 6 11.5699 -5.3334 0.0036 24 6 10.4511 -4.5877 -0.0022 25 6 9.3424 -5.4689 -0.0025 26 1 -0.4850 0.8399 0.0004 27 1 3.8649 -0.3632 -0.0004 28 1 5.9243 -1.8565 0.8900 29 1 5.9242 -1.8564 -0.8900 30 1 6.0304 -6.2483 -0.0030 31 1 6.9688 -8.5154 -0.0064 32 1 9.3956 -8.8657 -0.0124 33 1 12.5772 -4.9440 0.0100 34 1 10.4060 -3.5087 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757053694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:53 Heat of formation + Delta-G solvation = -74.870155 kcal Electronic energy + Delta-G solvation = -21274.372467 eV Core-core repulsion = 17751.333845 eV Total energy + Delta-G solvation = -3523.038623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.52295 -41.39115 -40.13363 -37.83067 -37.41671 -36.08471 -33.87328 -33.25333 -31.06530 -30.10746 -29.66081 -26.58771 -25.08536 -22.89987 -22.54131 -21.56152 -21.50760 -20.51503 -19.40816 -18.44852 -17.69903 -17.67354 -17.34790 -17.00224 -16.58991 -15.93718 -15.89033 -15.38885 -15.36249 -15.14559 -14.73329 -14.22928 -14.01825 -13.97207 -13.77907 -13.56990 -13.00930 -12.71185 -12.60556 -12.57306 -12.46402 -12.00422 -11.86101 -11.59353 -11.47634 -10.86861 -10.61263 -10.34556 -9.28454 -8.76117 -8.46412 -6.09496 -0.53054 0.53251 1.29169 1.33257 1.36027 1.42503 1.45517 1.74724 1.83658 2.19909 2.20467 2.81349 2.86520 3.07839 3.60922 3.85499 3.94398 4.02156 4.07852 4.12885 4.20483 4.24868 4.35187 4.61936 4.81112 4.92066 5.08919 5.21853 5.42081 5.43493 5.47671 5.62725 5.71728 5.84617 6.04852 6.46437 6.65696 6.70653 6.76965 7.24889 7.76519 8.70267 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035285 B = 0.003165 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.350040 B = 8844.566791 C = 9622.766538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.233 1.233 7 C -0.334 4.334 8 H 0.061 0.939 9 N -0.575 5.575 10 C 0.450 3.550 11 O -0.606 6.606 12 C 0.068 3.932 13 O -0.342 6.342 14 C 0.505 3.495 15 O -0.525 6.525 16 C -0.128 4.128 17 C -0.075 4.075 18 C -0.128 4.128 19 C -0.065 4.065 20 C 0.058 3.942 21 N -0.570 5.570 22 H 0.440 0.560 23 C 0.093 3.907 24 C -0.247 4.247 25 C -0.071 4.071 26 H 0.283 0.717 27 H 0.393 0.607 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.219 0.781 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.188 -12.016 0.019 30.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.156 1.156 7 C -0.462 4.462 8 H 0.079 0.921 9 N -0.217 5.217 10 C 0.237 3.763 11 O -0.491 6.491 12 C -0.009 4.009 13 O -0.258 6.258 14 C 0.352 3.648 15 O -0.417 6.417 16 C -0.130 4.130 17 C -0.094 4.094 18 C -0.147 4.147 19 C -0.085 4.085 20 C -0.050 4.050 21 N -0.174 5.174 22 H 0.282 0.718 23 C -0.036 4.036 24 C -0.271 4.271 25 C -0.077 4.077 26 H 0.092 0.908 27 H 0.229 0.771 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.181 0.819 32 H 0.185 0.815 33 H 0.236 0.764 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 27.890 -12.419 0.021 30.530 hybrid contribution -0.319 1.164 0.002 1.207 sum 27.570 -11.255 0.023 29.779 Atomic orbital electron populations 1.69775 1.08039 1.29585 1.49068 1.26079 0.96467 1.02600 0.95540 0.85420 0.79545 0.76785 0.80200 1.17878 1.19518 1.15625 1.19015 0.80663 0.95405 1.51142 0.92057 1.41801 1.06149 1.06926 1.66850 1.20111 0.89144 0.84104 0.82947 1.90570 1.70862 1.32577 1.55085 1.22594 0.90799 0.81413 1.06107 1.86619 1.24160 1.30970 1.84005 1.21612 0.79830 0.90964 0.72399 1.90744 1.60398 1.43033 1.47488 1.18536 0.92609 0.89163 1.12698 1.21537 0.99994 0.92476 0.95429 1.21123 0.95129 0.96623 1.01811 1.20710 0.91798 0.97904 0.98045 1.18313 0.84905 0.94338 1.07406 1.41847 1.04234 1.08407 1.62951 0.71847 1.22597 1.00695 0.81608 0.98737 1.21008 0.91254 1.00070 1.14795 1.18252 0.91440 0.94929 1.03075 0.90776 0.77093 0.86794 0.86707 0.85365 0.81873 0.81476 0.76440 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.96 21.66 0.30 -55.10 16 2 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 3 Si 0.96 38.83 27.74 68.60 1.90 40.73 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 7 C -0.33 -19.73 10.16 84.04 0.85 -18.88 16 8 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 9 N -0.58 -28.07 5.09 -306.98 -1.56 -29.64 16 10 C 0.45 21.87 7.86 87.66 0.69 22.56 16 11 O -0.61 -35.62 16.08 15.73 0.25 -35.37 16 12 C 0.07 2.54 5.96 71.24 0.42 2.97 16 13 O -0.34 -13.53 9.00 -50.67 -0.46 -13.99 16 14 C 0.50 18.16 7.89 70.18 0.55 18.71 16 15 O -0.53 -19.49 14.76 19.72 0.29 -19.20 16 16 C -0.13 -3.97 5.90 -19.94 -0.12 -4.09 16 17 C -0.08 -2.03 9.60 22.54 0.22 -1.81 16 18 C -0.13 -2.36 9.99 22.23 0.22 -2.14 16 19 C -0.06 -0.96 10.05 22.40 0.23 -0.73 16 20 C 0.06 1.07 7.26 38.94 0.28 1.35 16 21 N -0.57 -6.25 6.14 -187.60 -1.15 -7.40 16 22 H 0.44 1.10 8.96 -92.71 -0.83 0.27 16 23 C 0.09 1.19 11.83 83.07 0.98 2.17 16 24 C -0.25 -5.73 10.03 22.24 0.22 -5.51 16 25 C -0.07 -1.90 6.01 -21.15 -0.13 -2.02 16 26 H 0.28 15.38 8.31 -92.72 -0.77 14.61 16 27 H 0.39 15.84 5.76 -92.71 -0.53 15.31 16 28 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.12 3.68 8.14 -2.38 -0.02 3.66 16 30 H 0.13 3.80 7.60 -2.91 -0.02 3.77 16 31 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.22 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.14 3.60 7.00 -2.91 -0.02 3.58 16 Total: -1.00 -85.20 307.01 4.23 -80.97 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.25 Total: 26.32 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 4.90 Total: 12.67 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -2.41 Total: -92.14 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: 0.09 Total: -68.56 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Total: -85.20 4.23 -80.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757053694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.098 kcal (2) G-P(sol) polarization free energy of solvation -85.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds