Wall clock time and date at job start Tue Mar 31 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48500 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46858 * 299.99644 * 3 2 1 6 6 H 1.48496 * 109.47618 * 59.99567 * 3 2 1 7 7 C 1.37878 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46730 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46725 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.46980 * 180.02562 * 11 10 9 13 13 C 1.34754 * 117.00071 * 179.97438 * 12 11 10 14 14 O 1.21502 * 119.99504 * 359.97438 * 13 12 11 15 15 C 1.47442 * 119.99737 * 179.72320 * 13 12 11 16 16 C 1.39786 * 120.14208 * 0.02562 * 15 13 12 17 17 C 1.37732 * 119.94187 * 180.02562 * 16 15 13 18 18 C 1.38725 * 120.21661 * 359.97438 * 17 16 15 19 19 F 1.35105 * 119.86202 * 179.97438 * 18 17 16 20 20 C 1.38669 * 120.28408 * 359.97438 * 18 17 16 21 21 F 1.35097 * 119.97424 * 179.97438 * 20 18 17 22 22 C 1.38373 * 120.05235 * 359.76541 * 20 18 17 23 23 F 1.35106 * 120.11079 * 180.28289 * 22 20 18 24 24 H 0.96998 * 119.99385 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46963 * 60.00387 * 9 7 2 26 26 H 1.08991 * 109.47215 * 299.99957 * 9 7 2 27 27 H 1.09002 * 109.47327 * 60.00342 * 10 9 7 28 28 H 1.08999 * 109.47240 * 299.99764 * 10 9 7 29 29 H 1.08997 * 109.47282 * 60.00393 * 11 10 9 30 30 H 1.09002 * 109.47256 * 299.99620 * 11 10 9 31 31 H 1.08007 * 120.03399 * 0.02562 * 16 15 13 32 32 H 1.07996 * 119.89180 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 8 2.4237 -6.0907 0.0005 13 6 1.9086 -7.3360 0.0006 14 8 0.7040 -7.4950 0.0006 15 6 2.8068 -8.5052 -0.0050 16 6 4.1930 -8.3254 -0.0098 17 6 5.0282 -9.4206 -0.0155 18 6 4.4984 -10.7027 -0.0160 19 9 5.3243 -11.7719 -0.0221 20 6 3.1247 -10.8917 -0.0102 21 9 2.6155 -12.1430 -0.0112 22 6 2.2750 -9.7996 0.0011 23 9 0.9364 -9.9823 0.0125 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8719 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8895 29 1 0.8538 -5.0446 -0.8903 30 1 0.8532 -5.0451 0.8897 31 1 4.6089 -7.3286 -0.0090 32 1 6.0991 -9.2808 -0.0188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757093402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:02 Heat of formation + Delta-G solvation = -204.432875 kcal Electronic energy + Delta-G solvation = -21452.449726 eV Core-core repulsion = 17349.643351 eV Total energy + Delta-G solvation = -4102.806375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.23018 -49.64667 -48.88427 -40.57420 -38.89058 -36.57761 -34.07515 -32.00392 -31.33282 -31.19488 -27.26782 -25.08078 -23.79079 -23.21528 -21.41844 -20.44194 -18.96128 -18.62016 -18.18779 -17.31422 -17.00352 -16.72455 -16.44707 -16.30371 -15.97302 -15.87226 -15.32458 -14.98088 -14.83498 -14.50669 -14.16345 -14.10784 -13.23086 -12.68530 -12.56820 -12.43644 -12.23539 -12.13646 -11.94359 -11.03511 -10.79620 -10.72887 -10.54075 -10.51170 -9.81581 -9.58696 -9.55740 -9.51251 -9.20252 -8.43320 -6.07758 -4.11095 -0.26606 0.17598 1.98221 2.35387 2.83573 2.87229 3.27242 3.34964 3.38588 3.53711 3.65139 3.88909 4.01161 4.24020 4.40907 4.82368 5.02833 5.16575 5.28480 5.30671 5.31978 5.48156 5.50346 5.90316 5.94452 6.28351 6.45305 6.69731 6.89765 7.55112 7.64044 7.65285 7.90260 8.30524 8.95415 9.53618 11.03689 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.002696 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.999084 B =10384.675223 C =11101.908778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.069 3.931 12 O -0.349 6.349 13 C 0.504 3.496 14 O -0.488 6.488 15 C -0.141 4.141 16 C -0.010 4.010 17 C -0.148 4.148 18 C 0.131 3.869 19 F -0.113 7.113 20 C 0.018 3.982 21 F -0.112 7.112 22 C 0.161 3.839 23 F -0.092 7.092 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.172 0.828 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.726 -21.685 -0.023 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.266 6.266 13 C 0.346 3.654 14 O -0.376 6.376 15 C -0.144 4.144 16 C -0.028 4.028 17 C -0.167 4.167 18 C 0.110 3.890 19 F -0.091 7.091 20 C -0.003 4.003 21 F -0.091 7.091 22 C 0.140 3.860 23 F -0.070 7.070 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.189 0.811 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.145 -21.664 -0.023 23.922 hybrid contribution -0.027 0.400 0.002 0.401 sum 10.118 -21.264 -0.021 23.548 Atomic orbital electron populations 1.69973 1.06104 1.26721 1.50478 1.25036 0.94880 0.99414 0.95159 0.86489 0.80069 0.83536 0.77634 1.19652 1.20967 1.20961 1.21192 0.93147 0.90616 1.51066 0.92342 1.19063 0.93844 0.90698 0.97785 1.21789 1.00008 0.90728 1.02089 1.23639 0.91137 0.82968 1.02602 1.86512 1.42522 1.14323 1.83199 1.20427 0.86685 0.83857 0.74384 1.90934 1.15538 1.86837 1.44334 1.19241 0.94540 0.89893 1.10682 1.21442 0.90096 1.00936 0.90315 1.21195 1.02736 0.88991 1.03790 1.17670 0.85290 0.85088 1.00926 1.91602 1.70558 1.53835 1.93116 1.17301 0.90368 0.80202 1.12468 1.91593 1.87073 1.36133 1.94273 1.17315 0.78424 0.91138 0.99122 1.91686 1.27365 1.95620 1.92335 0.92896 0.96171 0.96160 0.91988 0.91994 0.91115 0.91125 0.81085 0.81771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.09 5.53 -26.73 -0.15 -2.24 16 11 C 0.07 1.18 5.48 37.16 0.20 1.38 16 12 O -0.35 -5.15 9.47 -40.64 -0.38 -5.53 16 13 C 0.50 7.26 7.89 34.48 0.27 7.54 16 14 O -0.49 -8.61 15.13 -19.27 -0.29 -8.90 16 15 C -0.14 -1.52 5.88 -104.94 -0.62 -2.14 16 16 C -0.01 -0.07 9.61 -39.19 -0.38 -0.45 16 17 C -0.15 -0.85 10.00 -39.59 -0.40 -1.24 16 18 C 0.13 1.02 7.31 -39.24 -0.29 0.73 16 19 F -0.11 -0.93 17.17 2.25 0.04 -0.89 16 20 C 0.02 0.18 7.30 -39.37 -0.29 -0.11 16 21 F -0.11 -1.23 17.09 2.25 0.04 -1.19 16 22 C 0.16 1.82 7.29 -38.90 -0.28 1.53 16 23 F -0.09 -1.27 15.46 2.25 0.03 -1.24 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.17 0.97 7.61 -52.48 -0.40 0.57 16 32 H 0.16 0.45 8.06 -52.49 -0.42 0.02 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -31.11 304.84 -5.62 -36.73 By element: Atomic # 1 Polarization: -3.48 SS G_CDS: -2.90 Total: -6.38 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.47 Total: -7.65 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.68 Total: -14.44 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.11 Total: -3.31 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.11 -5.62 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757093402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.703 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds