Wall clock time and date at job start Tue Mar 31 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48500 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46858 * 299.99644 * 3 2 1 6 6 H 1.48496 * 109.47618 * 59.99567 * 3 2 1 7 7 C 1.37878 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46730 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46725 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.46980 * 180.02562 * 11 10 9 13 13 C 1.34754 * 117.00071 * 179.97438 * 12 11 10 14 14 O 1.21502 * 119.99504 * 359.97438 * 13 12 11 15 15 C 1.47442 * 119.99737 * 179.72320 * 13 12 11 16 16 C 1.39786 * 120.14208 * 0.02562 * 15 13 12 17 17 C 1.37732 * 119.94187 * 180.02562 * 16 15 13 18 18 C 1.38725 * 120.21661 * 359.97438 * 17 16 15 19 19 F 1.35105 * 119.86202 * 179.97438 * 18 17 16 20 20 C 1.38669 * 120.28408 * 359.97438 * 18 17 16 21 21 F 1.35097 * 119.97424 * 179.97438 * 20 18 17 22 22 C 1.38373 * 120.05235 * 359.76541 * 20 18 17 23 23 F 1.35106 * 120.11079 * 180.28289 * 22 20 18 24 24 H 0.96998 * 119.99385 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46963 * 60.00387 * 9 7 2 26 26 H 1.08991 * 109.47215 * 299.99957 * 9 7 2 27 27 H 1.09002 * 109.47327 * 60.00342 * 10 9 7 28 28 H 1.08999 * 109.47240 * 299.99764 * 10 9 7 29 29 H 1.08997 * 109.47282 * 60.00393 * 11 10 9 30 30 H 1.09002 * 109.47256 * 299.99620 * 11 10 9 31 31 H 1.08007 * 120.03399 * 0.02562 * 16 15 13 32 32 H 1.07996 * 119.89180 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 8 2.4237 -6.0907 0.0005 13 6 1.9086 -7.3360 0.0006 14 8 0.7040 -7.4950 0.0006 15 6 2.8068 -8.5052 -0.0050 16 6 4.1930 -8.3254 -0.0098 17 6 5.0282 -9.4206 -0.0155 18 6 4.4984 -10.7027 -0.0160 19 9 5.3243 -11.7719 -0.0221 20 6 3.1247 -10.8917 -0.0102 21 9 2.6155 -12.1430 -0.0112 22 6 2.2750 -9.7996 0.0011 23 9 0.9364 -9.9823 0.0125 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8719 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8895 29 1 0.8538 -5.0446 -0.8903 30 1 0.8532 -5.0451 0.8897 31 1 4.6089 -7.3286 -0.0090 32 1 6.0991 -9.2808 -0.0188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757093402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:02 Heat of formation + Delta-G solvation = -221.166403 kcal Electronic energy + Delta-G solvation = -21453.175346 eV Core-core repulsion = 17349.643351 eV Total energy + Delta-G solvation = -4103.531995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.00651 -50.43699 -49.68933 -41.70136 -39.70098 -37.87113 -35.92793 -33.73082 -32.31691 -31.88439 -29.02679 -26.20937 -24.89218 -24.39338 -22.50271 -22.14367 -19.81042 -19.44498 -19.03486 -18.58918 -18.15389 -17.90251 -17.63697 -17.55486 -16.86260 -16.69198 -16.46717 -16.15879 -15.70804 -15.64752 -15.61869 -15.08014 -14.39808 -14.06371 -13.94374 -13.74860 -13.47268 -13.11174 -13.05424 -12.84203 -12.48363 -12.37673 -12.10575 -11.93775 -11.47129 -11.41136 -11.20710 -10.56032 -10.29299 -10.21914 -8.19951 -6.31112 -1.03055 -0.50623 1.06628 1.26232 1.43778 1.44471 1.57571 2.04255 2.07408 2.43108 2.81701 2.91616 3.14694 3.14849 3.27193 3.46710 4.02350 4.05794 4.07311 4.22962 4.43322 4.57514 4.70285 4.76222 4.83523 4.86828 5.10427 5.28308 5.31405 5.52745 5.67227 5.83219 6.20751 6.46063 6.86008 7.38769 8.92503 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.002696 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.999084 B =10384.675223 C =11101.908778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.023 3.977 10 C -0.092 4.092 11 C 0.078 3.922 12 O -0.337 6.337 13 C 0.505 3.495 14 O -0.529 6.529 15 C -0.154 4.154 16 C 0.010 3.990 17 C -0.117 4.117 18 C 0.142 3.858 19 F -0.112 7.112 20 C 0.008 3.992 21 F -0.124 7.124 22 C 0.141 3.859 23 F -0.117 7.117 24 H 0.263 0.737 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.196 0.804 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.284 -21.660 -0.033 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.014 4.014 10 C -0.129 4.129 11 C 0.005 3.995 12 O -0.253 6.253 13 C 0.350 3.650 14 O -0.420 6.420 15 C -0.157 4.157 16 C -0.008 4.008 17 C -0.136 4.136 18 C 0.121 3.879 19 F -0.090 7.090 20 C -0.013 4.013 21 F -0.102 7.102 22 C 0.120 3.880 23 F -0.095 7.095 24 H 0.072 0.928 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.213 0.787 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 13.734 -21.661 -0.033 25.648 hybrid contribution -1.073 0.298 0.005 1.113 sum 12.661 -21.364 -0.028 24.834 Atomic orbital electron populations 1.70113 1.07956 1.27797 1.51731 1.26018 0.95744 1.03580 0.94745 0.85350 0.79304 0.78534 0.77566 1.18015 1.20660 1.20649 1.21673 0.93885 0.91721 1.50407 0.91291 1.18959 0.94397 0.92649 0.95422 1.21460 0.98669 0.89654 1.03139 1.23254 0.90964 0.83196 1.02102 1.86475 1.41315 1.14161 1.83334 1.21034 0.86812 0.84188 0.72926 1.90921 1.17511 1.87153 1.46391 1.19088 0.95517 0.87870 1.13202 1.21737 0.88204 1.02627 0.88251 1.21604 1.04498 0.87003 1.00449 1.17811 0.84246 0.85943 0.99889 1.91617 1.70255 1.54124 1.92963 1.17424 0.91172 0.79355 1.13326 1.91560 1.87444 1.36749 1.94480 1.17531 0.77671 0.91981 1.00804 1.91617 1.29221 1.95801 1.92837 0.92787 0.98609 0.98602 0.90843 0.90843 0.91761 0.91780 0.78695 0.77378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.13 13.29 21.45 0.28 -55.85 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.54 -29.33 9.11 25.60 0.23 -29.10 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.16 4.97 29.85 0.15 1.30 16 10 C -0.09 -3.46 5.53 30.59 0.17 -3.29 16 11 C 0.08 2.66 5.48 71.98 0.39 3.06 16 12 O -0.34 -9.49 9.47 -56.65 -0.54 -10.03 16 13 C 0.51 14.43 7.89 70.25 0.55 14.98 16 14 O -0.53 -19.33 15.13 19.83 0.30 -19.03 16 15 C -0.15 -3.13 5.88 -20.07 -0.12 -3.25 16 16 C 0.01 0.10 9.61 22.52 0.22 0.32 16 17 C -0.12 -0.77 10.00 22.27 0.22 -0.55 16 18 C 0.14 1.78 7.31 22.49 0.16 1.94 16 19 F -0.11 -1.49 17.17 44.97 0.77 -0.71 16 20 C 0.01 0.16 7.30 22.40 0.16 0.32 16 21 F -0.12 -2.70 17.09 44.97 0.77 -1.93 16 22 C 0.14 3.17 7.29 22.71 0.17 3.34 16 23 F -0.12 -3.40 15.46 44.97 0.70 -2.70 16 24 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 25 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.20 1.22 7.61 -2.91 -0.02 1.20 16 32 H 0.21 -0.32 8.06 -2.91 -0.02 -0.34 16 Total: -1.00 -69.64 304.84 8.25 -61.38 By element: Atomic # 1 Polarization: -6.53 SS G_CDS: 1.17 Total: -5.36 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 2.78 Total: -10.65 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.28 Total: -55.85 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.24 Total: -29.06 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 2.24 Total: -5.35 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -69.64 8.25 -61.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757093402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.783 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds