Wall clock time and date at job start Tue Mar 31 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 120.00257 * 2 1 4 4 H 1.48495 * 109.47202 * 269.99970 * 3 2 1 5 5 H 1.48507 * 109.46792 * 29.99587 * 3 2 1 6 6 H 1.48493 * 109.47192 * 149.99673 * 3 2 1 7 7 C 1.38820 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99485 * 180.02562 * 7 2 1 9 9 O 1.34850 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.34736 * 116.99971 * 180.02562 * 9 7 2 11 11 O 1.21509 * 119.99691 * 0.02562 * 10 9 7 12 12 C 1.47659 * 120.00103 * 180.02562 * 10 9 7 13 13 C 1.39684 * 120.15402 * 5.67922 * 12 10 9 14 14 C 1.37913 * 119.84535 * 180.29862 * 13 12 10 15 15 C 1.38403 * 120.15116 * 359.72163 * 14 13 12 16 16 C 1.38355 * 120.31010 * 0.02562 * 15 14 13 17 17 C 1.37948 * 120.15497 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.07842 * 179.97438 * 17 16 15 19 19 C 1.53007 * 109.47010 * 98.54718 * 18 17 16 20 20 C 1.52997 * 109.46844 * 179.97438 * 19 18 17 21 21 F 1.39907 * 109.46902 * 60.00156 * 20 19 18 22 22 F 1.39902 * 109.47183 * 179.97438 * 20 19 18 23 23 F 1.39894 * 109.47275 * 300.00168 * 20 19 18 24 24 H 0.96994 * 119.99842 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.07763 * 0.02562 * 13 12 10 26 26 H 1.07997 * 119.92436 * 179.75381 * 14 13 12 27 27 H 1.08005 * 119.84220 * 180.02562 * 15 14 13 28 28 H 1.08004 * 119.92060 * 179.97438 * 16 15 14 29 29 H 1.08991 * 109.47038 * 338.54840 * 18 17 16 30 30 H 1.09004 * 109.46714 * 218.54531 * 18 17 16 31 31 H 1.08997 * 109.46684 * 299.99860 * 19 18 17 32 32 H 1.08995 * 109.47177 * 59.99660 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0082 -1.2023 0.0005 8 1 3.0882 -1.2022 0.0010 9 8 1.3339 -2.3701 0.0016 10 6 2.0677 -3.5001 0.0026 11 8 3.2811 -3.4365 0.0030 12 6 1.3973 -4.8157 0.0032 13 6 0.0079 -4.8953 -0.1168 14 6 -0.6122 -6.1271 -0.1093 15 6 0.1394 -7.2831 0.0110 16 6 1.5164 -7.2119 0.1249 17 6 2.1497 -5.9864 0.1199 18 6 3.6497 -5.9108 0.2448 19 6 4.2690 -5.7400 -1.1439 20 6 5.7918 -5.6627 -1.0170 21 9 6.2715 -6.8405 -0.4340 22 9 6.3582 -5.5071 -2.2867 23 9 6.1380 -4.5705 -0.2144 24 1 -0.4849 0.8400 -0.0004 25 1 -0.5798 -3.9940 -0.2108 26 1 -1.6867 -6.1899 -0.1980 27 1 -0.3514 -8.2452 0.0159 28 1 2.0967 -8.1179 0.2189 29 1 4.0231 -6.8286 0.6988 30 1 3.9197 -5.0600 0.8703 31 1 3.9989 -6.5909 -1.7693 32 1 3.8955 -4.8222 -1.5979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758924259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:42 Heat of formation + Delta-G solvation = -217.357190 kcal Electronic energy + Delta-G solvation = -22904.200521 eV Core-core repulsion = 18800.833706 eV Total energy + Delta-G solvation = -4103.366816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.79553 -47.35369 -47.19150 -39.82662 -38.16683 -35.52372 -34.00617 -32.26088 -30.91907 -30.26100 -26.14530 -25.33273 -23.34421 -22.41178 -21.23318 -19.97424 -18.24996 -18.10200 -17.80234 -17.17582 -17.03444 -15.67125 -15.16887 -15.00713 -14.59782 -14.42328 -14.23877 -14.11017 -13.90705 -13.73486 -13.45192 -13.40037 -13.19020 -13.01666 -12.85113 -12.49033 -11.79727 -11.75760 -11.56507 -11.40024 -11.24031 -10.98213 -10.73044 -10.48156 -10.32723 -9.89389 -8.89835 -8.70115 -8.64656 -8.53127 -6.52122 -4.14254 1.17902 1.56701 3.08268 3.09546 3.15248 3.21145 3.45798 3.86817 4.08093 4.19437 4.40390 4.41329 4.48924 4.98943 5.06281 5.08554 5.23545 5.30595 5.38043 5.52178 5.58571 5.75649 5.98321 6.12779 6.19168 6.36590 6.52360 6.60089 6.70830 6.98836 7.14380 7.33476 7.86224 8.64031 8.96979 9.76108 10.65395 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.006330 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.169375 B = 4422.660799 C = 6342.446584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.373 4.373 8 H 0.100 0.900 9 O -0.203 6.203 10 C 0.426 3.574 11 O -0.543 6.543 12 C -0.085 4.085 13 C -0.071 4.071 14 C -0.134 4.134 15 C -0.107 4.107 16 C -0.130 4.130 17 C -0.039 4.039 18 C -0.085 4.085 19 C -0.149 4.149 20 C 0.454 3.546 21 F -0.193 7.193 22 F -0.192 7.192 23 F -0.172 7.172 24 H 0.271 0.729 25 H 0.141 0.859 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -13.143 -1.282 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.449 4.449 8 H 0.117 0.883 9 O -0.110 6.110 10 C 0.275 3.725 11 O -0.443 6.443 12 C -0.086 4.086 13 C -0.089 4.089 14 C -0.152 4.152 15 C -0.125 4.125 16 C -0.148 4.148 17 C -0.039 4.039 18 C -0.122 4.122 19 C -0.187 4.187 20 C 0.400 3.600 21 F -0.175 7.175 22 F -0.173 7.173 23 F -0.153 7.153 24 H 0.081 0.919 25 H 0.159 0.841 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.900 -12.928 -1.273 13.310 hybrid contribution 0.504 0.797 -0.022 0.943 sum 3.404 -12.131 -1.295 12.666 Atomic orbital electron populations 1.69971 1.06100 1.27991 1.45375 1.25388 0.95835 0.99005 0.96102 0.85654 0.79137 0.79521 0.78850 1.19782 1.20259 1.18936 1.21329 0.92608 0.79674 1.51278 0.88275 1.83888 1.39282 1.13293 1.74527 1.20748 0.85971 0.85389 0.80428 1.90592 1.14673 1.87482 1.51504 1.19323 0.93668 0.91366 1.04286 1.21638 0.93710 0.98707 0.94848 1.21129 1.00013 0.92295 1.01737 1.21224 0.93884 0.98323 0.99088 1.20909 0.94683 0.96554 1.02655 1.19661 0.94952 0.91822 0.97467 1.20715 0.90928 1.04442 0.96139 1.22757 0.87345 1.07337 1.01294 1.20633 0.92674 0.73398 0.73313 1.93135 1.90596 1.48909 1.84832 1.93151 1.87612 1.95491 1.41056 1.93233 1.93652 1.54677 1.73769 0.91871 0.84084 0.85771 0.86080 0.85759 0.91150 0.86628 0.88611 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.31 13.67 55.49 0.76 -23.55 16 2 C 0.04 1.14 5.50 -17.51 -0.10 1.04 16 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.37 -10.64 9.65 30.95 0.30 -10.34 16 8 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 9 O -0.20 -5.60 9.01 -21.64 -0.19 -5.80 16 10 C 0.43 10.15 7.70 34.58 0.27 10.42 16 11 O -0.54 -13.24 10.84 -19.27 -0.21 -13.45 16 12 C -0.09 -1.64 5.87 -104.98 -0.62 -2.26 16 13 C -0.07 -1.23 9.62 -39.16 -0.38 -1.61 16 14 C -0.13 -1.83 10.03 -39.64 -0.40 -2.23 16 15 C -0.11 -1.30 10.04 -39.48 -0.40 -1.70 16 16 C -0.13 -1.69 9.66 -39.64 -0.38 -2.07 16 17 C -0.04 -0.62 5.17 -104.20 -0.54 -1.16 16 18 C -0.09 -1.33 4.36 -27.88 -0.12 -1.45 16 19 C -0.15 -2.23 4.77 -26.73 -0.13 -2.36 16 20 C 0.45 6.95 3.16 37.16 0.12 7.07 16 21 F -0.19 -2.75 16.80 2.25 0.04 -2.71 16 22 F -0.19 -2.94 17.32 2.25 0.04 -2.90 16 23 F -0.17 -3.08 16.80 2.25 0.04 -3.04 16 24 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.14 2.64 7.63 -52.48 -0.40 2.24 16 26 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.12 1.27 8.05 -52.48 -0.42 0.84 16 29 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 30 H 0.12 2.15 5.62 -51.93 -0.29 1.86 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.12 2.10 6.57 -51.93 -0.34 1.76 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -30.30 295.79 -5.09 -35.39 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -2.62 Total: 2.43 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.37 Total: -6.62 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.76 Total: -23.55 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.40 Total: -19.24 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.11 Total: -8.65 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.30 -5.09 -35.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758924259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.966 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds