Wall clock time and date at job start Tue Mar 31 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 120.00257 * 2 1 4 4 H 1.48495 * 109.47202 * 269.99970 * 3 2 1 5 5 H 1.48507 * 109.46792 * 29.99587 * 3 2 1 6 6 H 1.48493 * 109.47192 * 149.99673 * 3 2 1 7 7 C 1.38820 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99485 * 180.02562 * 7 2 1 9 9 O 1.34850 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.34736 * 116.99971 * 180.02562 * 9 7 2 11 11 O 1.21509 * 119.99691 * 0.02562 * 10 9 7 12 12 C 1.47659 * 120.00103 * 180.02562 * 10 9 7 13 13 C 1.39684 * 120.15402 * 5.67922 * 12 10 9 14 14 C 1.37913 * 119.84535 * 180.29862 * 13 12 10 15 15 C 1.38403 * 120.15116 * 359.72163 * 14 13 12 16 16 C 1.38355 * 120.31010 * 0.02562 * 15 14 13 17 17 C 1.37948 * 120.15497 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.07842 * 179.97438 * 17 16 15 19 19 C 1.53007 * 109.47010 * 98.54718 * 18 17 16 20 20 C 1.52997 * 109.46844 * 179.97438 * 19 18 17 21 21 F 1.39907 * 109.46902 * 60.00156 * 20 19 18 22 22 F 1.39902 * 109.47183 * 179.97438 * 20 19 18 23 23 F 1.39894 * 109.47275 * 300.00168 * 20 19 18 24 24 H 0.96994 * 119.99842 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.07763 * 0.02562 * 13 12 10 26 26 H 1.07997 * 119.92436 * 179.75381 * 14 13 12 27 27 H 1.08005 * 119.84220 * 180.02562 * 15 14 13 28 28 H 1.08004 * 119.92060 * 179.97438 * 16 15 14 29 29 H 1.08991 * 109.47038 * 338.54840 * 18 17 16 30 30 H 1.09004 * 109.46714 * 218.54531 * 18 17 16 31 31 H 1.08997 * 109.46684 * 299.99860 * 19 18 17 32 32 H 1.08995 * 109.47177 * 59.99660 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0082 -1.2023 0.0005 8 1 3.0882 -1.2022 0.0010 9 8 1.3339 -2.3701 0.0016 10 6 2.0677 -3.5001 0.0026 11 8 3.2811 -3.4365 0.0030 12 6 1.3973 -4.8157 0.0032 13 6 0.0079 -4.8953 -0.1168 14 6 -0.6122 -6.1271 -0.1093 15 6 0.1394 -7.2831 0.0110 16 6 1.5164 -7.2119 0.1249 17 6 2.1497 -5.9864 0.1199 18 6 3.6497 -5.9108 0.2448 19 6 4.2690 -5.7400 -1.1439 20 6 5.7918 -5.6627 -1.0170 21 9 6.2715 -6.8405 -0.4340 22 9 6.3582 -5.5071 -2.2867 23 9 6.1380 -4.5705 -0.2144 24 1 -0.4849 0.8400 -0.0004 25 1 -0.5798 -3.9940 -0.2108 26 1 -1.6867 -6.1899 -0.1980 27 1 -0.3514 -8.2452 0.0159 28 1 2.0967 -8.1179 0.2189 29 1 4.0231 -6.8286 0.6988 30 1 3.9197 -5.0600 0.8703 31 1 3.9989 -6.5909 -1.7693 32 1 3.8955 -4.8222 -1.5979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758924259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:42 Heat of formation + Delta-G solvation = -234.147947 kcal Electronic energy + Delta-G solvation = -22904.928623 eV Core-core repulsion = 18800.833706 eV Total energy + Delta-G solvation = -4104.094917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.05822 -48.57794 -48.51150 -41.42653 -39.73437 -37.32716 -35.37872 -34.29696 -32.22194 -31.46681 -27.82348 -26.91093 -24.80879 -23.63306 -22.65290 -21.42728 -19.86700 -19.49198 -19.37866 -18.77475 -18.32495 -17.21864 -16.62178 -16.45443 -16.37614 -16.09614 -15.49939 -15.45661 -15.28859 -14.99440 -14.73878 -14.71336 -14.59616 -14.19564 -14.16580 -14.07592 -13.60006 -13.20545 -12.94804 -12.84911 -12.57194 -12.43306 -12.21625 -12.08740 -11.97435 -11.81180 -10.72787 -10.66428 -9.91354 -9.74372 -8.56550 -6.32196 -0.12983 0.39937 1.32465 1.36060 1.49292 1.84278 1.87204 2.09730 2.73176 2.79181 2.89634 3.02232 3.16477 3.17287 3.84544 3.87039 4.11696 4.18895 4.22450 4.33284 4.43595 4.55012 4.70351 4.91151 4.93620 5.02409 5.17836 5.19419 5.44763 5.52804 5.65206 5.82262 6.00845 6.67329 6.89266 7.77360 8.64404 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.006330 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.169375 B = 4422.660799 C = 6342.446584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.004 4.004 3 Si 1.015 2.985 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.413 4.413 8 H 0.084 0.916 9 O -0.239 6.239 10 C 0.427 3.573 11 O -0.553 6.553 12 C -0.126 4.126 13 C -0.088 4.088 14 C -0.128 4.128 15 C -0.080 4.080 16 C -0.118 4.118 17 C -0.040 4.040 18 C -0.084 4.084 19 C -0.144 4.144 20 C 0.456 3.544 21 F -0.181 7.181 22 F -0.192 7.192 23 F -0.193 7.193 24 H 0.279 0.721 25 H 0.111 0.889 26 H 0.155 0.845 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -16.345 -1.389 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.204 4.204 3 Si 0.834 3.166 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.101 0.899 9 O -0.148 6.148 10 C 0.277 3.723 11 O -0.452 6.452 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.146 4.146 15 C -0.098 4.098 16 C -0.136 4.136 17 C -0.040 4.040 18 C -0.121 4.121 19 C -0.182 4.182 20 C 0.403 3.597 21 F -0.163 7.163 22 F -0.173 7.173 23 F -0.174 7.174 24 H 0.088 0.912 25 H 0.129 0.871 26 H 0.172 0.828 27 H 0.189 0.811 28 H 0.186 0.814 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.627 -16.157 -1.382 16.428 hybrid contribution 0.595 1.464 0.013 1.581 sum 3.222 -14.693 -1.369 15.104 Atomic orbital electron populations 1.70057 1.07611 1.29351 1.46755 1.26503 0.96851 1.02218 0.94851 0.84663 0.77714 0.74754 0.79509 1.18497 1.18384 1.18899 1.21446 0.92244 0.81074 1.54150 0.89860 1.83920 1.40133 1.14038 1.76679 1.21850 0.86219 0.86404 0.77875 1.90574 1.15423 1.88056 1.51135 1.19253 0.94750 0.89755 1.08970 1.21540 0.92925 0.99723 0.96424 1.21467 1.01740 0.91078 1.00284 1.21819 0.93504 0.99566 0.94885 1.21393 0.95522 0.96297 1.00366 1.19834 0.94953 0.91962 0.97274 1.20663 0.91071 1.04462 0.95861 1.22706 0.86721 1.07241 1.01499 1.20668 0.92928 0.73118 0.73028 1.93151 1.90505 1.47998 1.84645 1.93150 1.87656 1.95505 1.41004 1.93197 1.93847 1.55950 1.74421 0.91197 0.87069 0.82777 0.81059 0.81422 0.87594 0.90537 0.84910 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.44 13.67 21.64 0.30 -53.14 16 2 C 0.00 -0.22 5.50 84.89 0.47 0.25 16 3 Si 1.01 44.06 29.55 68.60 2.03 46.09 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.41 -25.27 9.65 67.96 0.66 -24.62 16 8 H 0.08 5.15 6.86 -2.91 -0.02 5.13 16 9 O -0.24 -14.28 9.01 11.34 0.10 -14.17 16 10 C 0.43 21.83 7.70 70.31 0.54 22.37 16 11 O -0.55 -28.88 10.84 19.81 0.21 -28.67 16 12 C -0.13 -4.98 5.87 -20.10 -0.12 -5.10 16 13 C -0.09 -3.10 9.62 22.54 0.22 -2.88 16 14 C -0.13 -3.09 10.03 22.23 0.22 -2.87 16 15 C -0.08 -1.47 10.04 22.34 0.22 -1.25 16 16 C -0.12 -2.44 9.66 22.23 0.21 -2.23 16 17 C -0.04 -1.21 5.17 -19.59 -0.10 -1.31 16 18 C -0.08 -2.49 4.36 29.85 0.13 -2.36 16 19 C -0.14 -4.15 4.77 30.60 0.15 -4.01 16 20 C 0.46 13.66 3.16 71.98 0.23 13.88 16 21 F -0.18 -4.76 16.80 44.97 0.76 -4.01 16 22 F -0.19 -5.75 17.32 44.97 0.78 -4.97 16 23 F -0.19 -7.07 16.80 44.97 0.76 -6.32 16 24 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.11 4.52 7.63 -2.91 -0.02 4.50 16 26 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 27 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 28 H 0.17 2.12 8.05 -2.91 -0.02 2.10 16 29 H 0.11 2.36 7.68 -2.39 -0.02 2.35 16 30 H 0.08 2.92 5.62 -2.39 -0.01 2.91 16 31 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.09 3.15 6.57 -2.39 -0.02 3.14 16 Total: -1.00 -73.10 295.79 8.93 -64.17 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.17 Total: 11.15 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 2.83 Total: -10.13 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.30 Total: -53.14 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: 0.32 Total: -42.84 kcal Atomic # 9 Polarization: -17.58 SS G_CDS: 2.29 Total: -15.29 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.10 8.93 -64.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758924259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.980 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds