Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35921 * 122.55480 * 2 1 4 4 C 1.31759 * 114.68851 * 180.24812 * 3 2 1 5 5 S 1.75894 * 109.44502 * 359.76557 * 4 3 2 6 6 C 1.34363 * 122.55339 * 179.80147 * 2 1 3 7 7 N 1.33172 * 125.05677 * 0.03870 * 6 2 1 8 8 C 1.33537 * 119.99497 * 179.72056 * 7 6 2 9 9 O 1.21981 * 120.00550 * 0.02562 * 8 7 6 10 10 C 1.47843 * 119.99665 * 180.02562 * 8 7 6 11 11 C 1.39983 * 119.88836 * 180.02562 * 10 8 7 12 12 C 1.36274 * 120.11654 * 180.25426 * 11 10 8 13 13 C 1.40919 * 119.88458 * 359.49688 * 12 11 10 14 14 C 1.41040 * 120.11549 * 180.25242 * 13 12 11 15 15 H 1.08006 * 120.00226 * 204.82084 * 14 13 12 16 16 C 1.40162 * 119.99869 * 24.81557 * 14 13 12 17 17 N 1.30689 * 119.99783 * 17.76062 * 16 14 13 18 18 Si 1.86803 * 120.00248 * 197.75809 * 16 14 13 19 19 H 1.48497 * 109.47285 * 90.00002 * 18 16 14 20 20 H 1.48501 * 109.47174 * 210.00477 * 18 16 14 21 21 H 1.48509 * 109.46761 * 329.99952 * 18 16 14 22 22 C 1.40921 * 119.77472 * 0.52247 * 13 12 11 23 23 C 1.36278 * 119.88530 * 359.73302 * 22 13 12 24 24 H 1.08999 * 109.47057 * 270.20297 * 1 2 3 25 25 H 1.09005 * 109.46978 * 30.19822 * 1 2 3 26 26 H 1.08996 * 109.46985 * 150.20040 * 1 2 3 27 27 H 1.07998 * 122.65744 * 359.97438 * 3 2 1 28 28 H 1.07995 * 125.28116 * 179.78835 * 4 3 2 29 29 H 1.08005 * 119.94121 * 359.97374 * 11 10 8 30 30 H 1.08000 * 120.06226 * 179.74475 * 12 11 10 31 31 H 0.97000 * 119.99917 * 179.97438 * 17 16 14 32 32 H 1.08004 * 120.05684 * 179.71106 * 22 13 12 33 33 H 1.07998 * 119.94415 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1965 1.1456 0.0000 4 6 3.5016 0.9653 -0.0052 5 16 3.8547 -0.7578 -0.0037 6 6 2.1880 -1.1325 0.0039 7 7 1.6808 -2.3639 0.0075 8 6 2.4958 -3.4216 0.0056 9 8 3.7049 -3.2601 0.0011 10 6 1.9327 -4.7886 0.0089 11 6 2.7892 -5.8959 0.0075 12 6 2.2752 -7.1579 0.0053 13 6 0.8788 -7.3474 0.0153 14 6 0.3416 -8.6514 0.0184 15 1 -0.6519 -8.8272 -0.3671 16 6 1.0970 -9.7193 0.5219 17 7 2.1269 -9.4854 1.2917 18 14 0.6317 -11.4768 0.0927 19 1 1.3377 -11.8870 -1.1476 20 1 1.0226 -12.3784 1.2061 21 1 -0.8354 -11.5622 -0.1215 22 6 0.0209 -6.2294 0.0162 23 6 0.5449 -4.9714 0.0131 24 1 -0.3633 0.0036 1.0277 25 1 -0.3633 0.8882 -0.5169 26 1 -0.3633 -0.8917 -0.5107 27 1 1.7437 2.1261 -0.0004 28 1 4.2402 1.7533 -0.0093 29 1 3.8593 -5.7496 0.0035 30 1 2.9368 -8.0115 0.0000 31 1 2.6495 -10.2245 1.6404 32 1 -1.0500 -6.3693 0.0191 33 1 -0.1117 -4.1139 0.0134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758953854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = 42.982323 kcal Electronic energy + Delta-G solvation = -19146.189259 eV Core-core repulsion = 16071.013975 eV Total energy + Delta-G solvation = -3075.175285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47144 -38.82114 -37.07585 -33.80754 -33.42774 -31.71211 -30.10597 -29.42288 -27.66021 -25.91940 -24.31538 -22.05867 -20.87678 -20.11116 -19.72009 -17.68360 -17.40853 -16.51505 -15.97133 -15.86834 -15.29151 -15.06426 -13.99868 -13.89309 -13.85653 -13.61097 -13.08993 -12.79044 -12.55919 -12.49530 -12.05011 -11.86926 -11.34842 -11.21137 -11.01860 -10.83503 -10.60013 -10.44230 -9.93320 -9.61591 -9.38190 -9.33118 -9.22640 -8.65385 -7.70775 -7.54675 -7.30023 -6.94700 -4.50688 1.03680 1.36727 1.83081 2.02884 2.55558 2.59004 2.98742 3.02768 3.04666 3.19313 3.79789 4.13584 4.46205 4.73495 4.77807 4.98352 5.16530 5.35293 5.47099 5.55118 5.70849 6.25793 6.38986 6.46223 6.55460 6.80001 6.88881 6.98014 7.23247 7.29268 7.58080 7.63571 7.84478 7.96020 8.09261 8.17558 8.52134 8.72002 8.86598 9.12348 9.96641 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042540 B = 0.003395 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.048700 B = 8246.052292 C = 8819.676950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.485 5.485 3 C 0.067 3.933 4 C -0.325 4.325 5 S 0.207 5.793 6 C 0.341 3.659 7 N -0.606 5.606 8 C 0.534 3.466 9 O -0.563 6.563 10 C -0.257 4.257 11 C -0.041 4.041 12 C -0.185 4.185 13 C 0.130 3.870 14 C -0.442 4.442 15 H 0.084 0.916 16 C 0.073 3.927 17 N -0.770 5.770 18 Si 0.914 3.086 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.245 4.245 23 C -0.023 4.023 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.180 0.820 28 H 0.176 0.824 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.286 0.714 32 H 0.096 0.904 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 16.643 -1.713 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.181 5.181 3 C -0.064 4.064 4 C -0.465 4.465 5 S 0.454 5.546 6 C -0.031 4.031 7 N -0.362 5.362 8 C 0.329 3.671 9 O -0.451 6.451 10 C -0.261 4.261 11 C -0.060 4.060 12 C -0.204 4.204 13 C 0.127 3.873 14 C -0.470 4.470 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.393 5.393 18 Si 0.738 3.262 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.264 4.264 23 C -0.042 4.042 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.197 0.803 28 H 0.193 0.807 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.261 15.487 -1.561 15.568 hybrid contribution -0.890 0.231 -0.001 0.919 sum -1.151 15.718 -1.562 15.837 Atomic orbital electron populations 1.22067 0.75647 1.04840 1.03721 1.43576 1.08625 1.02635 1.63294 1.20675 0.91717 0.90859 1.03108 1.25919 0.98705 1.06067 1.15820 1.86140 1.01533 0.93018 1.73949 1.24292 0.94575 0.91482 0.92778 1.68985 1.37118 0.94430 1.35663 1.19615 0.84540 0.88781 0.74181 1.90515 1.18242 1.86043 1.50263 1.18546 0.93728 0.89346 1.24524 1.20510 0.97666 0.92193 0.95646 1.20972 0.95545 0.95398 1.08479 1.17812 0.91911 0.92533 0.85055 1.19833 1.01816 0.91655 1.33685 0.89754 1.26108 0.93833 1.02349 0.92516 1.69782 1.13938 1.35206 1.20353 0.86210 0.80379 0.80399 0.79248 1.18946 1.20051 1.18329 1.20729 0.97942 0.92474 1.15285 1.20501 0.93553 0.96118 0.94072 0.90848 0.90070 0.88332 0.80321 0.80656 0.88354 0.86238 0.90241 0.88618 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.69 59.85 0.64 1.38 16 2 N -0.48 -5.91 3.02 -127.19 -0.38 -6.30 16 3 C 0.07 0.61 10.68 -17.63 -0.19 0.42 16 4 C -0.33 -3.29 11.17 28.85 0.32 -2.97 16 5 S 0.21 3.20 19.92 -107.50 -2.14 1.05 16 6 C 0.34 5.76 7.65 -88.71 -0.68 5.08 16 7 N -0.61 -12.45 8.99 -14.53 -0.13 -12.58 16 8 C 0.53 12.73 7.67 -12.88 -0.10 12.63 16 9 O -0.56 -13.81 13.60 4.94 0.07 -13.75 16 10 C -0.26 -6.50 5.90 -104.66 -0.62 -7.12 16 11 C -0.04 -1.06 9.52 -39.64 -0.38 -1.44 16 12 C -0.18 -4.95 8.63 -39.27 -0.34 -5.29 16 13 C 0.13 3.48 5.57 -106.81 -0.60 2.89 16 14 C -0.44 -11.41 9.04 -37.80 -0.34 -11.75 16 15 H 0.08 2.06 7.91 -52.48 -0.42 1.64 16 16 C 0.07 1.78 5.14 -17.32 -0.09 1.69 16 17 N -0.77 -19.41 10.96 55.56 0.61 -18.80 16 18 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.24 -6.10 9.73 -39.27 -0.38 -6.48 16 23 C -0.02 -0.56 9.51 -39.64 -0.38 -0.94 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.10 1.08 7.75 -51.93 -0.40 0.67 16 27 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 28 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.10 2.49 7.63 -52.48 -0.40 2.09 16 30 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 31 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 32 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 33 H 0.10 2.23 7.52 -52.49 -0.39 1.84 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -31.79 304.00 -8.73 -40.53 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.18 Total: 4.30 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.12 Total: -11.90 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.09 Total: -37.68 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.07 Total: -13.75 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.14 Total: 1.05 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.79 -8.73 -40.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758953854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.507 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds