Wall clock time and date at job start Tue Mar 31 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35921 * 122.55480 * 2 1 4 4 C 1.31759 * 114.68851 * 180.24812 * 3 2 1 5 5 S 1.75894 * 109.44502 * 359.76557 * 4 3 2 6 6 C 1.34363 * 122.55339 * 179.80147 * 2 1 3 7 7 N 1.33172 * 125.05677 * 0.03870 * 6 2 1 8 8 C 1.33537 * 119.99497 * 179.72056 * 7 6 2 9 9 O 1.21981 * 120.00550 * 0.02562 * 8 7 6 10 10 C 1.47843 * 119.99665 * 180.02562 * 8 7 6 11 11 C 1.39983 * 119.88836 * 180.02562 * 10 8 7 12 12 C 1.36274 * 120.11654 * 180.25426 * 11 10 8 13 13 C 1.40919 * 119.88458 * 359.49688 * 12 11 10 14 14 C 1.41040 * 120.11549 * 180.25242 * 13 12 11 15 15 H 1.08006 * 120.00226 * 204.82084 * 14 13 12 16 16 C 1.40162 * 119.99869 * 24.81557 * 14 13 12 17 17 N 1.30689 * 119.99783 * 17.76062 * 16 14 13 18 18 Si 1.86803 * 120.00248 * 197.75809 * 16 14 13 19 19 H 1.48497 * 109.47285 * 90.00002 * 18 16 14 20 20 H 1.48501 * 109.47174 * 210.00477 * 18 16 14 21 21 H 1.48509 * 109.46761 * 329.99952 * 18 16 14 22 22 C 1.40921 * 119.77472 * 0.52247 * 13 12 11 23 23 C 1.36278 * 119.88530 * 359.73302 * 22 13 12 24 24 H 1.08999 * 109.47057 * 270.20297 * 1 2 3 25 25 H 1.09005 * 109.46978 * 30.19822 * 1 2 3 26 26 H 1.08996 * 109.46985 * 150.20040 * 1 2 3 27 27 H 1.07998 * 122.65744 * 359.97438 * 3 2 1 28 28 H 1.07995 * 125.28116 * 179.78835 * 4 3 2 29 29 H 1.08005 * 119.94121 * 359.97374 * 11 10 8 30 30 H 1.08000 * 120.06226 * 179.74475 * 12 11 10 31 31 H 0.97000 * 119.99917 * 179.97438 * 17 16 14 32 32 H 1.08004 * 120.05684 * 179.71106 * 22 13 12 33 33 H 1.07998 * 119.94415 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1965 1.1456 0.0000 4 6 3.5016 0.9653 -0.0052 5 16 3.8547 -0.7578 -0.0037 6 6 2.1880 -1.1325 0.0039 7 7 1.6808 -2.3639 0.0075 8 6 2.4958 -3.4216 0.0056 9 8 3.7049 -3.2601 0.0011 10 6 1.9327 -4.7886 0.0089 11 6 2.7892 -5.8959 0.0075 12 6 2.2752 -7.1579 0.0053 13 6 0.8788 -7.3474 0.0153 14 6 0.3416 -8.6514 0.0184 15 1 -0.6519 -8.8272 -0.3671 16 6 1.0970 -9.7193 0.5219 17 7 2.1269 -9.4854 1.2917 18 14 0.6317 -11.4768 0.0927 19 1 1.3377 -11.8870 -1.1476 20 1 1.0226 -12.3784 1.2061 21 1 -0.8354 -11.5622 -0.1215 22 6 0.0209 -6.2294 0.0162 23 6 0.5449 -4.9714 0.0131 24 1 -0.3633 0.0036 1.0277 25 1 -0.3633 0.8882 -0.5169 26 1 -0.3633 -0.8917 -0.5107 27 1 1.7437 2.1261 -0.0004 28 1 4.2402 1.7533 -0.0093 29 1 3.8593 -5.7496 0.0035 30 1 2.9368 -8.0115 0.0000 31 1 2.6495 -10.2245 1.6404 32 1 -1.0500 -6.3693 0.0191 33 1 -0.1117 -4.1139 0.0134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758953854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:39 Heat of formation + Delta-G solvation = 23.397408 kcal Electronic energy + Delta-G solvation = -19147.038525 eV Core-core repulsion = 16071.013975 eV Total energy + Delta-G solvation = -3076.024550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56792 -40.45669 -38.93875 -35.67691 -34.81696 -32.66015 -31.99107 -31.36079 -28.88166 -27.56992 -25.48277 -23.72284 -22.77569 -21.37631 -21.14258 -19.36458 -18.97847 -17.74905 -17.44948 -17.05409 -16.88596 -16.61231 -15.68635 -15.36039 -15.01083 -14.92033 -14.72306 -14.40221 -13.97364 -13.71877 -13.43799 -13.29552 -13.15486 -12.84241 -12.62306 -12.38244 -12.08170 -11.70657 -11.68375 -11.40240 -11.12392 -10.96704 -10.47797 -10.23261 -9.56598 -9.46363 -8.80178 -8.69991 -6.46582 -0.37007 0.13556 0.67077 1.05637 1.07373 1.19250 1.38542 1.48856 1.54087 1.56357 2.16067 2.37948 2.92081 3.28244 3.73537 4.04104 4.17699 4.41311 4.48269 4.52056 4.58602 4.67618 4.82888 4.87391 4.99574 5.05260 5.27602 5.30806 5.51454 5.62203 5.67864 5.86991 6.01274 6.12990 6.20562 6.23431 6.56034 6.76951 6.90720 7.49815 8.17155 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042540 B = 0.003395 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.048700 B = 8246.052292 C = 8819.676950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.470 5.470 3 C 0.078 3.922 4 C -0.309 4.309 5 S 0.157 5.843 6 C 0.326 3.674 7 N -0.636 5.636 8 C 0.529 3.471 9 O -0.593 6.593 10 C -0.274 4.274 11 C -0.053 4.053 12 C -0.202 4.202 13 C 0.103 3.897 14 C -0.471 4.471 15 H 0.092 0.908 16 C 0.032 3.968 17 N -0.804 5.804 18 Si 0.993 3.007 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.251 1.251 22 C -0.255 4.255 23 C -0.018 4.018 24 H 0.084 0.916 25 H 0.130 0.870 26 H 0.076 0.924 27 H 0.242 0.758 28 H 0.215 0.785 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.296 0.704 32 H 0.113 0.887 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 19.592 -1.919 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.165 5.165 3 C -0.051 4.051 4 C -0.448 4.448 5 S 0.405 5.595 6 C -0.044 4.044 7 N -0.396 5.396 8 C 0.321 3.679 9 O -0.481 6.481 10 C -0.278 4.278 11 C -0.073 4.073 12 C -0.221 4.221 13 C 0.099 3.901 14 C -0.498 4.498 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.428 5.428 18 Si 0.813 3.187 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.174 1.174 22 C -0.274 4.274 23 C -0.037 4.037 24 H 0.103 0.897 25 H 0.148 0.852 26 H 0.094 0.906 27 H 0.258 0.742 28 H 0.232 0.768 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.670 18.548 -1.764 18.707 hybrid contribution -0.383 -0.215 0.084 0.447 sum -2.053 18.334 -1.679 18.525 Atomic orbital electron populations 1.22392 0.73497 1.06197 1.04942 1.44109 1.10165 1.02029 1.60187 1.21664 0.91257 0.91668 1.00487 1.26202 1.00148 1.02551 1.15900 1.86296 1.01723 0.98550 1.72924 1.24488 0.95513 0.91902 0.92540 1.68817 1.36463 0.95015 1.39275 1.19469 0.84592 0.89301 0.74526 1.90504 1.18966 1.86879 1.51766 1.18903 0.94344 0.90467 1.24070 1.20568 0.97670 0.92665 0.96348 1.20916 0.95912 0.95186 1.10135 1.18151 0.92055 0.93888 0.85964 1.20136 1.02734 0.92143 1.34790 0.88969 1.27074 0.93310 1.06694 0.91540 1.69833 1.14899 1.37105 1.20922 0.85032 0.80346 0.74290 0.79069 1.18547 1.18988 1.17415 1.20961 0.98687 0.92396 1.15402 1.20665 0.93377 0.96523 0.93136 0.89698 0.85174 0.90550 0.74167 0.76794 0.88930 0.87505 0.89317 0.86886 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.69 127.77 1.37 2.41 16 2 N -0.47 -9.83 3.02 -556.32 -1.68 -11.51 16 3 C 0.08 0.97 10.68 83.32 0.89 1.86 16 4 C -0.31 -4.88 11.17 67.08 0.75 -4.13 16 5 S 0.16 4.75 19.92 -56.49 -1.13 3.63 16 6 C 0.33 10.74 7.65 179.68 1.37 12.11 16 7 N -0.64 -26.59 8.99 -318.66 -2.87 -29.46 16 8 C 0.53 26.35 7.67 86.98 0.67 27.01 16 9 O -0.59 -30.62 13.60 -5.25 -0.07 -30.69 16 10 C -0.27 -14.55 5.90 -19.89 -0.12 -14.67 16 11 C -0.05 -2.95 9.52 22.23 0.21 -2.74 16 12 C -0.20 -11.53 8.63 22.47 0.19 -11.34 16 13 C 0.10 5.74 5.57 -21.28 -0.12 5.62 16 14 C -0.47 -24.99 9.04 23.42 0.21 -24.78 16 15 H 0.09 4.58 7.91 -2.91 -0.02 4.55 16 16 C 0.03 1.59 5.14 85.33 0.44 2.03 16 17 N -0.80 -41.90 10.96 21.86 0.24 -41.66 16 18 Si 0.99 36.74 29.60 68.60 2.03 38.77 16 19 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 21 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 22 C -0.26 -13.10 9.73 22.47 0.22 -12.89 16 23 C -0.02 -0.90 9.51 22.23 0.21 -0.69 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.13 0.64 8.10 -2.38 -0.02 0.62 16 26 H 0.08 1.53 7.75 -2.39 -0.02 1.51 16 27 H 0.24 0.14 8.06 -2.91 -0.02 0.12 16 28 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 29 H 0.09 5.09 7.63 -2.91 -0.02 5.07 16 30 H 0.11 6.21 6.16 -2.91 -0.02 6.20 16 31 H 0.30 13.75 8.29 -92.71 -0.77 12.99 16 32 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 33 H 0.12 5.47 7.52 -2.91 -0.02 5.45 16 Total: -1.00 -76.03 304.00 3.97 -72.07 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.14 Total: 19.05 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 6.30 Total: -20.19 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -4.30 Total: -82.63 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.07 Total: -30.69 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.13 Total: 3.63 kcal Total: -76.03 3.97 -72.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758953854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.464 kcal (2) G-P(sol) polarization free energy of solvation -76.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds