Wall clock time and date at job start Tue Mar 31 2020 05:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48495 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46761 * 299.99846 * 3 2 1 6 6 H 1.48493 * 109.46945 * 59.99641 * 3 2 1 7 7 C 1.37883 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47041 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.34939 * 116.99855 * 179.97438 * 11 10 9 13 13 O 1.21648 * 119.99901 * 359.97438 * 12 11 10 14 14 C 1.43198 * 120.00086 * 179.97438 * 12 11 10 15 15 C 8.35654 * 88.40402 * 179.97438 * 2 1 3 16 16 C 9.66959 * 84.76139 * 179.97438 * 2 1 3 17 17 C 1.39971 * 120.11134 * 264.12780 * 16 15 14 18 18 C 1.37712 * 119.97543 * 179.78036 * 17 16 15 19 19 C 1.38895 * 120.24991 * 0.48228 * 18 17 16 20 20 C 1.39592 * 120.10056 * 359.51891 * 19 18 17 21 21 C 1.38064 * 120.01168 * 0.24255 * 20 19 18 22 22 O 1.36545 * 108.58981 * 180.24013 * 20 19 18 23 23 C 1.43979 * 105.45164 * 342.68061 * 22 20 19 24 24 O 1.36395 * 131.32527 * 179.82781 * 19 18 17 25 25 H 0.97001 * 119.99878 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47214 * 60.00268 * 9 7 2 27 27 H 1.09004 * 109.47517 * 299.99706 * 9 7 2 28 28 H 1.08998 * 109.46970 * 60.00030 * 10 9 7 29 29 H 1.09000 * 109.46841 * 299.99673 * 10 9 7 30 30 H 1.08004 * 120.01515 * 0.04220 * 17 16 15 31 31 H 1.08001 * 119.86882 * 180.26418 * 18 17 16 32 32 H 1.07998 * 120.06230 * 180.02562 * 21 20 19 33 33 H 1.09002 * 110.56047 * 268.63120 * 23 22 20 34 34 H 1.09000 * 110.56362 * 145.78156 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 8 1.5306 -4.8996 0.0012 12 6 2.2655 -6.0314 0.0017 13 8 3.4803 -5.9677 0.0021 14 6 1.6153 -7.3072 0.0017 15 6 1.0823 -8.3533 0.0037 16 6 0.4322 -9.6292 0.0043 17 6 0.2240 -10.3107 1.2091 18 6 -0.4056 -11.5355 1.2068 19 6 -0.8268 -12.1035 0.0114 20 6 -0.6227 -11.4299 -1.1941 21 6 0.0033 -10.1993 -1.2000 22 8 -1.1273 -12.1912 -2.2091 23 6 -1.2719 -13.5145 -1.6606 24 8 -1.4582 -13.2835 -0.2519 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6239 -2.5568 0.8903 28 1 2.8711 -3.6040 0.8923 29 1 2.8724 -3.6048 -0.8877 30 1 0.5532 -9.8742 2.1405 31 1 -0.5692 -12.0578 2.1378 32 1 0.1614 -9.6772 -2.1321 33 1 -0.3710 -14.1024 -1.8364 34 1 -2.1438 -14.0119 -2.0855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761213420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:30 Heat of formation + Delta-G solvation = -70.623096 kcal Electronic energy + Delta-G solvation = -20021.018682 eV Core-core repulsion = 16465.871475 eV Total energy + Delta-G solvation = -3555.147207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.63241 -40.06297 -38.59957 -36.78583 -36.38104 -34.06020 -33.34898 -31.16169 -30.58367 -30.01637 -26.53330 -25.68601 -24.31659 -23.40172 -22.86440 -20.95697 -19.54257 -18.43801 -18.20094 -17.81408 -17.08372 -16.68050 -16.17362 -16.07173 -15.51936 -14.96811 -14.58054 -14.49604 -14.37415 -13.67769 -13.50484 -13.46419 -13.35750 -13.04139 -12.43315 -12.20877 -11.82846 -11.37581 -11.13133 -10.98881 -10.89462 -10.79052 -10.67555 -10.54678 -9.69890 -9.68417 -9.33513 -9.31344 -8.46095 -8.44193 -6.11683 -4.16185 0.20185 0.71602 1.21817 2.03490 2.38619 2.76981 2.94633 3.26969 3.27367 3.34720 3.39102 3.40023 3.92758 4.13531 4.18592 4.38968 4.44510 4.54988 4.64905 4.73023 5.00665 5.19944 5.25077 5.52674 5.54126 5.67296 5.78138 5.86212 5.98750 6.03169 6.57752 6.58061 6.75610 6.88608 7.51735 7.59211 7.82437 8.03188 8.21528 8.89546 9.48357 10.99850 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.037516 B = 0.002120 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.164271 B =13205.459580 C =13436.752255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.071 3.929 11 O -0.334 6.334 12 C 0.576 3.424 13 O -0.490 6.490 14 C -0.150 4.150 15 C -0.031 4.031 16 C 0.014 3.986 17 C -0.072 4.072 18 C -0.099 4.099 19 C 0.047 3.953 20 C 0.032 3.968 21 C -0.068 4.068 22 O -0.305 6.305 23 C 0.213 3.787 24 O -0.306 6.306 25 H 0.263 0.737 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.087 0.913 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 -28.201 -0.459 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.002 4.002 11 O -0.250 6.250 12 C 0.420 3.580 13 O -0.379 6.379 14 C -0.151 4.151 15 C -0.032 4.032 16 C 0.014 3.986 17 C -0.090 4.090 18 C -0.118 4.118 19 C 0.003 3.997 20 C -0.013 4.013 21 C -0.087 4.087 22 O -0.221 6.221 23 C 0.101 3.899 24 O -0.222 6.222 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.105 0.895 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.766 -28.111 -0.559 28.253 hybrid contribution 0.446 0.755 -0.198 0.899 sum -2.320 -27.356 -0.757 27.465 Atomic orbital electron populations 1.69982 1.06104 1.26930 1.49763 1.24995 0.94932 0.99442 0.94858 0.86400 0.80049 0.83086 0.77697 1.19557 1.20834 1.20836 1.21010 0.93259 0.89976 1.52180 0.92074 1.19208 0.94142 0.88825 0.99095 1.23444 0.96880 0.78498 1.01389 1.86285 1.41550 1.15020 1.82152 1.17171 0.84351 0.82618 0.73849 1.90938 1.14022 1.87896 1.45059 1.19186 0.99474 0.92820 1.03635 1.18708 0.96776 0.92758 0.94986 1.15534 1.00600 0.89490 0.92987 1.21077 0.97285 0.93003 0.97645 1.19975 1.00117 0.95984 0.95696 1.20086 0.97021 0.87538 0.95103 1.19476 1.00471 0.95392 0.85920 1.20045 0.97221 0.92633 0.98774 1.87423 1.79900 1.20651 1.34145 1.25696 1.03856 0.84774 0.75580 1.87357 1.71078 1.37070 1.26674 0.92727 0.95183 0.95178 0.91950 0.91975 0.83293 0.83700 0.83644 0.89539 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.63 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.55 5.32 37.16 0.20 1.75 16 11 O -0.33 -6.79 10.11 -41.15 -0.42 -7.21 16 12 C 0.58 10.58 7.79 32.66 0.25 10.83 16 13 O -0.49 -9.91 16.87 -19.38 -0.33 -10.24 16 14 C -0.15 -2.29 13.76 -38.84 -0.53 -2.82 16 15 C -0.03 -0.40 13.24 -38.84 -0.51 -0.91 16 16 C 0.01 0.14 5.75 -106.67 -0.61 -0.47 16 17 C -0.07 -0.58 9.76 -39.12 -0.38 -0.96 16 18 C -0.10 -0.74 10.04 -39.53 -0.40 -1.13 16 19 C 0.05 0.42 7.16 -38.83 -0.28 0.14 16 20 C 0.03 0.31 7.13 -39.14 -0.28 0.03 16 21 C -0.07 -0.66 9.78 -38.99 -0.38 -1.04 16 22 O -0.30 -2.77 11.41 -45.83 -0.52 -3.29 16 23 C 0.21 1.21 8.88 101.05 0.90 2.11 16 24 O -0.31 -2.55 11.39 -45.34 -0.52 -3.06 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 29 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -32.46 321.48 -7.16 -39.62 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: -3.34 Total: -6.01 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.59 Total: -5.39 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.78 Total: -23.80 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.46 -7.16 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761213420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.007 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds