Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47024 * 269.99788 * 3 2 1 5 5 H 1.48504 * 109.47103 * 29.99468 * 3 2 1 6 6 H 1.48503 * 109.47494 * 149.99588 * 3 2 1 7 7 C 1.37883 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99807 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00359 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47314 * 180.02562 * 9 7 2 11 11 O 1.45203 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34736 * 116.99579 * 180.02562 * 11 10 9 13 13 O 1.21486 * 120.00159 * 359.97438 * 12 11 10 14 14 C 1.47593 * 119.99672 * 179.97438 * 12 11 10 15 15 C 1.40268 * 119.80524 * 0.02562 * 14 12 11 16 16 C 1.36355 * 120.37116 * 179.97438 * 15 14 12 17 17 C 1.39333 * 119.86067 * 359.97438 * 16 15 14 18 18 C 1.46978 * 135.22474 * 179.97438 * 17 16 15 19 19 C 1.46599 * 126.82514 * 0.06093 * 18 17 16 20 20 O 1.21327 * 120.00489 * 180.02562 * 19 18 17 21 21 N 1.31917 * 106.34852 * 180.02562 * 18 17 16 22 22 N 1.28361 * 111.94119 * 0.02562 * 21 18 17 23 23 H 0.96995 * 124.37725 * 179.97438 * 22 21 18 24 24 C 1.37232 * 111.25504 * 359.97438 * 22 21 18 25 25 C 1.38787 * 134.49722 * 179.97438 * 24 22 21 26 26 H 0.97001 * 120.00512 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46898 * 60.00166 * 9 7 2 28 28 H 1.08994 * 109.47202 * 300.00502 * 9 7 2 29 29 H 1.09002 * 109.47045 * 60.00203 * 10 9 7 30 30 H 1.09002 * 109.47207 * 300.00078 * 10 9 7 31 31 H 1.08007 * 119.81413 * 0.27157 * 15 14 12 32 32 H 1.08001 * 120.06893 * 180.02562 * 16 15 14 33 33 H 1.08007 * 119.99995 * 359.97438 * 19 18 17 34 34 H 1.08000 * 120.22342 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 8 5.4735 -2.6366 0.0022 12 6 6.0851 -3.8371 0.0017 13 8 5.4235 -4.8560 0.0008 14 6 7.5590 -3.9143 0.0022 15 6 8.3190 -2.7354 0.0038 16 6 9.6813 -2.7932 0.0049 17 6 10.3231 -4.0300 0.0049 18 6 11.7225 -4.4792 0.0054 19 6 12.9178 -3.6305 0.0073 20 8 14.0208 -4.1359 0.0070 21 7 11.6892 -5.7980 0.0046 22 7 10.4868 -6.2473 0.0032 23 1 10.2540 -7.1889 0.0020 24 6 9.5730 -5.2234 0.0034 25 6 8.1868 -5.1569 0.0019 26 1 -0.4851 0.8400 -0.0004 27 1 3.8744 -0.6801 0.8912 28 1 3.8752 -0.6805 -0.8887 29 1 3.6585 -3.1502 -0.8893 30 1 3.6578 -3.1507 0.8907 31 1 7.8222 -1.7763 0.0091 32 1 10.2616 -1.8824 0.0065 33 1 12.8166 -2.5551 0.0080 34 1 7.5990 -6.0629 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766184999.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = -35.625259 kcal Electronic energy + Delta-G solvation = -20818.910015 eV Core-core repulsion = 17297.573179 eV Total energy + Delta-G solvation = -3521.336836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.93682 -40.24413 -39.09822 -37.89547 -36.28116 -33.37784 -33.10280 -31.32569 -30.57841 -30.35723 -26.14916 -25.60638 -24.12803 -23.45552 -21.17142 -20.74326 -20.49592 -18.96587 -17.87832 -17.13189 -16.60443 -16.38315 -16.32547 -16.29064 -16.05611 -15.59768 -14.82567 -14.31350 -14.28294 -14.26150 -13.67245 -13.42404 -12.92624 -12.53527 -12.48309 -11.79521 -11.59482 -11.47048 -11.33489 -10.77915 -10.74316 -10.67822 -10.42000 -10.13026 -9.99509 -9.79288 -9.40432 -9.28017 -8.66838 -8.62716 -6.17125 -4.18889 0.06224 0.54249 1.20762 2.10818 2.30036 2.72930 2.88770 3.24465 3.32256 3.35296 3.42664 3.51878 3.90767 4.07661 4.34383 4.54546 4.65194 4.73551 4.77075 5.04649 5.16336 5.20692 5.37460 5.64262 5.85464 5.88802 5.89125 5.93560 6.23040 6.37110 6.40098 6.62750 6.90442 7.09100 7.15140 7.33191 7.56889 7.93283 8.34667 8.84259 9.41989 10.95367 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.031795 B = 0.002848 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.417062 B = 9830.507163 C =10690.477939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.352 6.352 12 C 0.503 3.497 13 O -0.508 6.508 14 C -0.082 4.082 15 C -0.077 4.077 16 C -0.072 4.072 17 C -0.092 4.092 18 C -0.060 4.060 19 C 0.426 3.574 20 O -0.451 6.451 21 N -0.167 5.167 22 N -0.404 5.404 23 H 0.451 0.549 24 C 0.046 3.954 25 C -0.044 4.044 26 H 0.266 0.734 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.044 -7.072 0.036 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.011 3.989 11 O -0.269 6.269 12 C 0.347 3.653 13 O -0.398 6.398 14 C -0.086 4.086 15 C -0.096 4.096 16 C -0.092 4.092 17 C -0.099 4.099 18 C -0.226 4.226 19 C 0.281 3.719 20 O -0.318 6.318 21 N 0.000 5.000 22 N -0.127 5.127 23 H 0.297 0.703 24 C -0.065 4.065 25 C -0.065 4.065 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 23.955 -8.408 0.040 25.388 hybrid contribution -0.794 0.755 -0.023 1.096 sum 23.161 -7.653 0.017 24.393 Atomic orbital electron populations 1.69888 1.06314 1.27275 1.49921 1.24942 0.94772 0.99222 0.94086 0.86743 0.80421 0.83238 0.78747 1.20037 1.21183 1.18705 1.20825 0.88220 0.95063 1.52594 0.90647 1.19631 0.97047 0.89983 0.97976 1.23472 0.71594 1.01841 1.02030 1.86529 1.26678 1.30940 1.82711 1.20863 0.88395 0.82559 0.73500 1.90831 1.66857 1.36376 1.45717 1.19008 0.90482 0.93590 1.05511 1.21208 0.93251 0.98709 0.96403 1.20136 0.93983 0.95664 0.99432 1.19832 0.91747 0.93921 1.04361 1.24004 0.95008 0.90125 1.13493 1.23114 0.84248 0.94025 0.70557 1.90596 1.28324 1.78793 1.34068 1.73185 1.03785 1.13494 1.09532 1.43294 1.01068 1.09518 1.58788 0.70334 1.18899 0.92268 0.88612 1.06726 1.20111 0.89759 0.98471 0.98188 0.92383 0.95277 0.95711 0.91464 0.91449 0.82992 0.83895 0.85289 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.53 -14.55 9.66 -34.44 -0.33 -14.89 16 8 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.20 4.42 -27.89 -0.12 -0.33 16 10 C 0.08 1.66 5.41 37.16 0.20 1.87 16 11 O -0.35 -6.08 9.44 -40.59 -0.38 -6.47 16 12 C 0.50 7.84 7.89 34.55 0.27 8.12 16 13 O -0.51 -9.12 16.10 -19.25 -0.31 -9.43 16 14 C -0.08 -0.96 5.87 -104.96 -0.62 -1.58 16 15 C -0.08 -0.73 9.54 -39.50 -0.38 -1.11 16 16 C -0.07 -0.54 10.02 -39.85 -0.40 -0.94 16 17 C -0.09 -0.81 6.45 -104.92 -0.68 -1.48 16 18 C -0.06 -0.54 7.31 -80.92 -0.59 -1.13 16 19 C 0.43 3.14 11.73 34.10 0.40 3.54 16 20 O -0.45 -5.15 17.92 5.52 0.10 -5.05 16 21 N -0.17 -1.66 12.10 34.36 0.42 -1.24 16 22 N -0.40 -3.18 6.85 32.33 0.22 -2.96 16 23 H 0.45 2.00 8.96 -190.51 -1.71 0.30 16 24 C 0.05 0.42 7.36 -84.21 -0.62 -0.20 16 25 C -0.04 -0.44 9.61 -39.02 -0.38 -0.81 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 28 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.15 1.37 7.58 -52.48 -0.40 0.97 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.13 0.32 8.06 -52.48 -0.42 -0.11 16 34 H 0.15 1.34 7.62 -52.49 -0.40 0.94 16 LS Contribution 312.97 15.07 4.72 4.72 Total: -1.00 -34.62 312.97 -7.02 -41.64 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -4.55 Total: -4.22 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.34 Total: -7.01 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 1.41 Total: -30.19 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.59 Total: -20.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.62 -7.02 -41.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766184999.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.011 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds