Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47024 * 269.99788 * 3 2 1 5 5 H 1.48504 * 109.47103 * 29.99468 * 3 2 1 6 6 H 1.48503 * 109.47494 * 149.99588 * 3 2 1 7 7 C 1.37883 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99807 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00359 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47314 * 180.02562 * 9 7 2 11 11 O 1.45203 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34736 * 116.99579 * 180.02562 * 11 10 9 13 13 O 1.21486 * 120.00159 * 359.97438 * 12 11 10 14 14 C 1.47593 * 119.99672 * 179.97438 * 12 11 10 15 15 C 1.40268 * 119.80524 * 0.02562 * 14 12 11 16 16 C 1.36355 * 120.37116 * 179.97438 * 15 14 12 17 17 C 1.39333 * 119.86067 * 359.97438 * 16 15 14 18 18 C 1.46978 * 135.22474 * 179.97438 * 17 16 15 19 19 C 1.46599 * 126.82514 * 0.06093 * 18 17 16 20 20 O 1.21327 * 120.00489 * 180.02562 * 19 18 17 21 21 N 1.31917 * 106.34852 * 180.02562 * 18 17 16 22 22 N 1.28361 * 111.94119 * 0.02562 * 21 18 17 23 23 H 0.96995 * 124.37725 * 179.97438 * 22 21 18 24 24 C 1.37232 * 111.25504 * 359.97438 * 22 21 18 25 25 C 1.38787 * 134.49722 * 179.97438 * 24 22 21 26 26 H 0.97001 * 120.00512 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46898 * 60.00166 * 9 7 2 28 28 H 1.08994 * 109.47202 * 300.00502 * 9 7 2 29 29 H 1.09002 * 109.47045 * 60.00203 * 10 9 7 30 30 H 1.09002 * 109.47207 * 300.00078 * 10 9 7 31 31 H 1.08007 * 119.81413 * 0.27157 * 15 14 12 32 32 H 1.08001 * 120.06893 * 180.02562 * 16 15 14 33 33 H 1.08007 * 119.99995 * 359.97438 * 19 18 17 34 34 H 1.08000 * 120.22342 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 8 5.4735 -2.6366 0.0022 12 6 6.0851 -3.8371 0.0017 13 8 5.4235 -4.8560 0.0008 14 6 7.5590 -3.9143 0.0022 15 6 8.3190 -2.7354 0.0038 16 6 9.6813 -2.7932 0.0049 17 6 10.3231 -4.0300 0.0049 18 6 11.7225 -4.4792 0.0054 19 6 12.9178 -3.6305 0.0073 20 8 14.0208 -4.1359 0.0070 21 7 11.6892 -5.7980 0.0046 22 7 10.4868 -6.2473 0.0032 23 1 10.2540 -7.1889 0.0020 24 6 9.5730 -5.2234 0.0034 25 6 8.1868 -5.1569 0.0019 26 1 -0.4851 0.8400 -0.0004 27 1 3.8744 -0.6801 0.8912 28 1 3.8752 -0.6805 -0.8887 29 1 3.6585 -3.1502 -0.8893 30 1 3.6578 -3.1507 0.8907 31 1 7.8222 -1.7763 0.0091 32 1 10.2616 -1.8824 0.0065 33 1 12.8166 -2.5551 0.0080 34 1 7.5990 -6.0629 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766184999.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = -59.012499 kcal Electronic energy + Delta-G solvation = -20819.924162 eV Core-core repulsion = 17297.573179 eV Total energy + Delta-G solvation = -3522.350983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.61140 -41.50175 -39.77187 -38.73740 -37.64332 -35.36919 -33.79704 -32.88247 -31.70113 -31.09427 -27.52785 -26.51996 -25.29304 -24.16750 -22.66649 -22.04135 -21.25353 -19.83439 -19.05247 -18.55027 -17.83138 -17.57930 -17.41750 -17.04884 -16.89417 -16.28810 -16.22158 -15.68431 -15.23537 -14.97841 -14.95345 -14.84315 -14.35144 -13.75826 -13.45595 -13.17118 -13.11279 -12.52245 -12.45751 -12.39790 -12.13198 -11.78105 -11.63885 -11.50044 -11.42695 -11.35907 -11.03707 -10.78165 -10.05870 -9.28710 -8.31374 -6.39947 -0.71830 -0.15480 0.56702 1.32949 1.36776 1.42493 1.44446 1.56879 1.79741 2.02437 2.38039 2.64129 2.95466 3.03961 3.23639 3.41383 3.56099 3.96163 4.04247 4.10783 4.20037 4.20567 4.41849 4.53942 4.65147 4.77433 4.92248 5.06776 5.21527 5.23905 5.33273 5.48174 5.54850 5.60034 5.82252 6.18094 6.36708 6.62323 6.66821 6.70965 7.25264 8.84692 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.031795 B = 0.002848 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.417062 B = 9830.507163 C =10690.477939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.238 1.238 7 C -0.543 4.543 8 H 0.033 0.967 9 C -0.003 4.003 10 C 0.094 3.906 11 O -0.348 6.348 12 C 0.503 3.497 13 O -0.540 6.540 14 C -0.100 4.100 15 C -0.083 4.083 16 C -0.051 4.051 17 C -0.090 4.090 18 C -0.065 4.065 19 C 0.435 3.565 20 O -0.497 6.497 21 N -0.193 5.193 22 N -0.396 5.396 23 H 0.462 0.538 24 C 0.039 3.961 25 C -0.042 4.042 26 H 0.270 0.730 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.160 0.840 32 H 0.189 0.811 33 H 0.191 0.809 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.163 -4.982 0.035 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.161 1.161 7 C -0.581 4.581 8 H 0.051 0.949 9 C -0.040 4.040 10 C 0.021 3.979 11 O -0.263 6.263 12 C 0.349 3.651 13 O -0.432 6.432 14 C -0.103 4.103 15 C -0.102 4.102 16 C -0.071 4.071 17 C -0.097 4.097 18 C -0.232 4.232 19 C 0.293 3.707 20 O -0.367 6.367 21 N -0.026 5.026 22 N -0.120 5.120 23 H 0.310 0.690 24 C -0.073 4.073 25 C -0.063 4.063 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.178 0.822 32 H 0.206 0.794 33 H 0.207 0.793 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 27.090 -6.354 0.038 27.825 hybrid contribution -1.740 -0.045 -0.024 1.741 sum 25.350 -6.399 0.015 26.145 Atomic orbital electron populations 1.70048 1.08485 1.28618 1.51474 1.26001 0.95671 1.03779 0.93427 0.85576 0.79707 0.77361 0.79553 1.18787 1.21022 1.16061 1.21132 0.90906 0.93699 1.52359 0.94854 1.19463 0.93914 0.91813 0.98823 1.23011 0.73607 1.00053 1.01278 1.86497 1.24612 1.32062 1.83176 1.21567 0.89930 0.81413 0.72152 1.90816 1.67892 1.37091 1.47371 1.18851 0.87873 0.95301 1.08323 1.21325 0.94096 0.97976 0.96792 1.20533 0.93200 0.96738 0.96609 1.20058 0.91566 0.94306 1.03771 1.24518 0.95856 0.89963 1.12852 1.24095 0.82600 0.95891 0.68105 1.90598 1.29832 1.79801 1.36426 1.73194 1.04528 1.14559 1.10306 1.43340 1.00411 1.10102 1.58116 0.68988 1.18925 0.91982 0.89504 1.06873 1.20052 0.90264 0.98056 0.97969 0.92132 0.94237 0.94363 0.92335 0.92353 0.82244 0.79386 0.79304 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 2 C 0.01 0.51 5.47 84.66 0.46 0.97 16 3 Si 0.96 41.65 27.47 68.60 1.88 43.54 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 7 C -0.54 -30.50 9.66 25.60 0.25 -30.25 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 9 C 0.00 -0.12 4.42 29.85 0.13 0.01 16 10 C 0.09 3.79 5.41 71.98 0.39 4.18 16 11 O -0.35 -11.67 9.44 -56.46 -0.53 -12.20 16 12 C 0.50 15.52 7.89 70.29 0.55 16.08 16 13 O -0.54 -19.79 16.10 19.88 0.32 -19.47 16 14 C -0.10 -2.20 5.87 -20.08 -0.12 -2.32 16 15 C -0.08 -1.32 9.54 22.32 0.21 -1.11 16 16 C -0.05 -0.53 10.02 22.09 0.22 -0.31 16 17 C -0.09 -1.28 6.45 -20.06 -0.13 -1.41 16 18 C -0.07 -0.99 7.31 43.61 0.32 -0.67 16 19 C 0.44 4.88 11.73 70.00 0.82 5.70 16 20 O -0.50 -10.39 17.92 -3.18 -0.06 -10.44 16 21 N -0.19 -3.52 12.10 -45.22 -0.55 -4.06 16 22 N -0.40 -5.69 6.85 -51.64 -0.35 -6.05 16 23 H 0.46 3.73 8.96 -220.05 -1.97 1.76 16 24 C 0.04 0.64 7.36 39.10 0.29 0.93 16 25 C -0.04 -0.80 9.61 22.63 0.22 -0.58 16 26 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.04 1.70 7.20 -2.39 -0.02 1.68 16 28 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.16 2.31 7.58 -2.91 -0.02 2.29 16 32 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 33 H 0.19 -0.20 8.06 -2.91 -0.02 -0.22 16 34 H 0.15 2.68 7.62 -2.91 -0.02 2.66 16 Total: -1.00 -77.95 312.97 3.77 -74.18 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -0.87 Total: 0.91 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 3.62 Total: -8.79 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.60 Total: -67.74 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.27 Total: -42.11 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.54 kcal Total: -77.95 3.77 -74.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766184999.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.170 kcal (2) G-P(sol) polarization free energy of solvation -77.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds