Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46719 * 98.72916 * 3 2 1 5 5 C 1.36740 * 119.99856 * 263.82461 * 4 3 2 6 6 H 1.08002 * 120.00207 * 200.40609 * 5 4 3 7 7 C 1.39095 * 120.00108 * 20.40564 * 5 4 3 8 8 N 1.31343 * 119.99672 * 21.46812 * 7 5 4 9 9 Si 1.86804 * 120.00121 * 201.45550 * 7 5 4 10 10 H 1.48504 * 109.47065 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46548 * 120.00167 * 9 7 5 12 12 H 1.48493 * 109.47273 * 240.00157 * 9 7 5 13 13 C 1.34776 * 120.00008 * 83.83106 * 4 3 2 14 14 O 1.21781 * 120.00105 * 179.97438 * 13 4 3 15 15 C 1.41800 * 119.99741 * 0.27044 * 13 4 3 16 16 C 1.35147 * 119.99921 * 179.72775 * 15 13 4 17 17 C 1.46936 * 120.00254 * 180.02562 * 16 15 13 18 18 C 1.39993 * 120.10093 * 359.97438 * 17 16 15 19 19 C 1.37744 * 119.97781 * 179.97438 * 18 17 16 20 20 C 1.38860 * 120.17191 * 0.02773 * 19 18 17 21 21 O 1.35834 * 119.89877 * 179.97438 * 20 19 18 22 22 C 1.39451 * 120.20419 * 359.97126 * 20 19 18 23 23 O 1.35996 * 119.99001 * 179.97438 * 22 20 19 24 24 C 1.38088 * 120.02159 * 359.74709 * 22 20 19 25 25 H 1.08999 * 109.47198 * 338.72642 * 3 2 1 26 26 H 1.09004 * 109.46704 * 218.72455 * 3 2 1 27 27 H 0.97000 * 119.99759 * 180.02562 * 8 7 5 28 28 H 1.07992 * 120.00697 * 359.72855 * 15 13 4 29 29 H 1.08003 * 119.99934 * 359.97438 * 16 15 13 30 30 H 1.08009 * 120.01047 * 359.96079 * 18 17 16 31 31 H 1.07994 * 119.90804 * 180.02562 * 19 18 17 32 32 H 0.96700 * 113.99669 * 90.00130 * 21 20 19 33 33 H 0.96706 * 113.99225 * 89.99986 * 23 22 20 34 34 H 1.07996 * 120.08616 * 180.25375 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.2105 -1.3653 5 6 3.4446 -0.8617 -2.1391 6 1 4.0962 -0.7249 -2.9895 7 6 2.9599 -2.1285 -1.8311 8 7 1.8753 -2.2571 -1.1015 9 14 3.8512 -3.6469 -2.4554 10 1 5.0368 -3.2338 -3.2484 11 1 4.2908 -4.4720 -1.3016 12 1 2.9347 -4.4418 -3.3117 13 6 3.2020 1.4603 -1.8585 14 8 3.6082 1.6348 -2.9932 15 6 2.8462 2.5724 -1.0539 16 6 2.9574 3.8260 -1.5465 17 6 2.5893 4.9785 -0.7127 18 6 2.1226 4.7804 0.5922 19 6 1.7787 5.8627 1.3718 20 6 1.8931 7.1511 0.8668 21 8 1.5520 8.2143 1.6403 22 6 2.3572 7.3569 -0.4320 23 8 2.4671 8.6206 -0.9224 24 6 2.7098 6.2782 -1.2187 25 1 2.9718 -0.9568 0.3729 26 1 2.9710 0.8026 0.6429 27 1 1.5375 -3.1406 -0.8864 28 1 2.4863 2.4178 -0.0475 29 1 3.3177 3.9807 -2.5529 30 1 2.0320 3.7793 0.9874 31 1 1.4192 5.7086 2.3785 32 1 2.2817 8.5674 2.1674 33 1 3.3274 9.0317 -0.7608 34 1 3.0732 6.4366 -2.2233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779512101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = -30.909625 kcal Electronic energy + Delta-G solvation = -21392.331955 eV Core-core repulsion = 17871.199604 eV Total energy + Delta-G solvation = -3521.132351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24828 -39.10467 -37.11532 -37.02702 -35.87617 -34.47213 -32.89161 -31.97817 -30.45890 -28.59527 -27.54307 -25.46670 -23.48612 -22.89525 -21.08521 -18.99558 -18.69296 -18.03899 -17.38868 -17.12735 -16.43166 -16.10209 -15.81424 -14.96242 -14.92178 -14.31604 -14.12367 -13.78831 -13.57772 -13.18126 -13.10401 -12.63881 -12.55969 -12.29596 -12.09910 -11.73326 -11.54371 -11.39735 -11.23851 -11.21048 -10.67563 -10.49739 -10.43011 -10.31595 -9.85607 -9.38028 -8.94646 -8.69936 -8.16939 -7.95018 -6.67819 -4.08082 0.55048 1.13422 2.09991 3.04640 3.14876 3.21277 3.50557 3.61116 3.88307 3.93258 3.97300 4.03040 4.23943 4.67247 4.74929 4.79876 4.97380 5.10876 5.17758 5.29332 5.40677 5.63199 5.70428 5.84407 5.98753 6.13868 6.17901 6.20409 6.34291 6.56791 6.70136 6.85051 7.21371 7.31179 7.62218 7.83525 8.17355 8.66895 8.89498 9.04582 9.67199 10.37130 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.031358 B = 0.003501 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.699693 B = 7996.746602 C = 8654.851974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.241 3.759 3 C 0.218 3.782 4 N -0.426 5.426 5 C -0.305 4.305 6 H 0.113 0.887 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.930 3.070 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.468 3.532 14 O -0.583 6.583 15 C -0.162 4.162 16 C -0.077 4.077 17 C -0.037 4.037 18 C -0.105 4.105 19 C -0.126 4.126 20 C 0.071 3.929 21 O -0.489 6.489 22 C 0.080 3.920 23 O -0.489 6.489 24 C -0.120 4.120 25 H 0.125 0.875 26 H 0.088 0.912 27 H 0.277 0.723 28 H 0.117 0.883 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.383 0.617 33 H 0.385 0.615 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 13.527 8.500 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.077 4.077 3 C 0.090 3.910 4 N -0.144 5.144 5 C -0.432 4.432 6 H 0.130 0.870 7 C -0.174 4.174 8 N -0.500 5.500 9 Si 0.756 3.244 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.261 3.739 14 O -0.469 6.469 15 C -0.183 4.183 16 C -0.098 4.098 17 C -0.037 4.037 18 C -0.123 4.123 19 C -0.145 4.145 20 C 0.025 3.975 21 O -0.298 6.298 22 C 0.035 3.965 23 O -0.298 6.298 24 C -0.138 4.138 25 H 0.143 0.857 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.239 0.761 33 H 0.240 0.760 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.170 13.205 7.580 15.552 hybrid contribution 1.420 -0.801 0.198 1.643 sum 4.590 12.403 7.778 15.343 Atomic orbital electron populations 1.80911 1.13494 1.11578 1.08471 1.29212 0.95289 0.90704 0.92522 1.18782 0.81800 1.04140 0.86228 1.43680 1.54272 1.05841 1.10590 1.19866 1.26944 0.84246 1.12142 0.86952 1.25434 0.94817 0.99898 0.97274 1.69832 1.17521 1.25350 1.37272 0.85798 0.79680 0.80238 0.78730 1.18835 1.20251 1.20668 1.16834 0.86142 0.83273 0.87610 1.90682 1.51534 1.85118 1.19570 1.22373 1.01716 0.94034 1.00206 1.22101 0.97973 0.90455 0.99288 1.19050 0.98149 0.92823 0.93677 1.21389 0.98303 0.99232 0.93392 1.21253 1.01037 0.91247 1.00951 1.18904 1.01560 0.87187 0.89824 1.84884 1.38721 1.46385 1.59850 1.18646 1.01161 0.84843 0.91874 1.84934 1.39048 1.25803 1.80030 1.21547 1.00774 0.90998 1.00528 0.85719 0.89386 0.91270 0.86548 0.84689 0.84716 0.84841 0.76134 0.76022 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.86 18.54 42.16 0.78 -10.08 16 2 C 0.24 5.17 13.14 -20.76 -0.27 4.90 16 3 C 0.22 4.12 4.79 -6.83 -0.03 4.09 16 4 N -0.43 -9.72 2.59 -121.13 -0.31 -10.03 16 5 C -0.30 -7.62 9.26 -15.05 -0.14 -7.76 16 6 H 0.11 2.97 7.43 -52.49 -0.39 2.58 16 7 C 0.03 0.75 4.83 -17.44 -0.08 0.66 16 8 N -0.86 -21.06 9.59 55.50 0.53 -20.53 16 9 Si 0.93 18.81 29.61 -169.99 -5.03 13.78 16 10 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.47 10.60 7.34 -14.90 -0.11 10.49 16 14 O -0.58 -15.28 15.78 5.12 0.08 -15.20 16 15 C -0.16 -2.89 8.30 -39.32 -0.33 -3.21 16 16 C -0.08 -1.24 9.41 -37.16 -0.35 -1.59 16 17 C -0.04 -0.50 5.87 -105.06 -0.62 -1.12 16 18 C -0.10 -1.30 9.40 -39.10 -0.37 -1.67 16 19 C -0.13 -1.42 9.96 -39.53 -0.39 -1.82 16 20 C 0.07 0.82 6.73 -38.90 -0.26 0.56 16 21 O -0.49 -5.02 13.27 -33.89 -0.45 -5.47 16 22 C 0.08 0.96 6.71 -39.18 -0.26 0.69 16 23 O -0.49 -5.21 13.28 -34.40 -0.46 -5.66 16 24 C -0.12 -1.50 9.72 -38.98 -0.38 -1.88 16 25 H 0.13 2.37 6.63 -51.93 -0.34 2.02 16 26 H 0.09 1.24 6.44 -51.93 -0.33 0.90 16 27 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 28 H 0.12 1.75 4.08 -52.49 -0.21 1.53 16 29 H 0.14 2.29 7.45 -52.48 -0.39 1.90 16 30 H 0.14 1.52 6.15 -52.48 -0.32 1.20 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.38 1.85 9.06 45.56 0.41 2.26 16 33 H 0.38 2.00 9.06 45.56 0.41 2.41 16 34 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -33.76 310.16 -4.93 -38.70 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -1.15 Total: 7.48 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.60 Total: 2.36 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.00 Total: -40.65 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.83 Total: -26.33 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.76 -4.93 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779512101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.786 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds