Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46719 * 98.72916 * 3 2 1 5 5 C 1.36740 * 119.99856 * 263.82461 * 4 3 2 6 6 H 1.08002 * 120.00207 * 200.40609 * 5 4 3 7 7 C 1.39095 * 120.00108 * 20.40564 * 5 4 3 8 8 N 1.31343 * 119.99672 * 21.46812 * 7 5 4 9 9 Si 1.86804 * 120.00121 * 201.45550 * 7 5 4 10 10 H 1.48504 * 109.47065 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46548 * 120.00167 * 9 7 5 12 12 H 1.48493 * 109.47273 * 240.00157 * 9 7 5 13 13 C 1.34776 * 120.00008 * 83.83106 * 4 3 2 14 14 O 1.21781 * 120.00105 * 179.97438 * 13 4 3 15 15 C 1.41800 * 119.99741 * 0.27044 * 13 4 3 16 16 C 1.35147 * 119.99921 * 179.72775 * 15 13 4 17 17 C 1.46936 * 120.00254 * 180.02562 * 16 15 13 18 18 C 1.39993 * 120.10093 * 359.97438 * 17 16 15 19 19 C 1.37744 * 119.97781 * 179.97438 * 18 17 16 20 20 C 1.38860 * 120.17191 * 0.02773 * 19 18 17 21 21 O 1.35834 * 119.89877 * 179.97438 * 20 19 18 22 22 C 1.39451 * 120.20419 * 359.97126 * 20 19 18 23 23 O 1.35996 * 119.99001 * 179.97438 * 22 20 19 24 24 C 1.38088 * 120.02159 * 359.74709 * 22 20 19 25 25 H 1.08999 * 109.47198 * 338.72642 * 3 2 1 26 26 H 1.09004 * 109.46704 * 218.72455 * 3 2 1 27 27 H 0.97000 * 119.99759 * 180.02562 * 8 7 5 28 28 H 1.07992 * 120.00697 * 359.72855 * 15 13 4 29 29 H 1.08003 * 119.99934 * 359.97438 * 16 15 13 30 30 H 1.08009 * 120.01047 * 359.96079 * 18 17 16 31 31 H 1.07994 * 119.90804 * 180.02562 * 19 18 17 32 32 H 0.96700 * 113.99669 * 90.00130 * 21 20 19 33 33 H 0.96706 * 113.99225 * 89.99986 * 23 22 20 34 34 H 1.07996 * 120.08616 * 180.25375 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.2105 -1.3653 5 6 3.4446 -0.8617 -2.1391 6 1 4.0962 -0.7249 -2.9895 7 6 2.9599 -2.1285 -1.8311 8 7 1.8753 -2.2571 -1.1015 9 14 3.8512 -3.6469 -2.4554 10 1 5.0368 -3.2338 -3.2484 11 1 4.2908 -4.4720 -1.3016 12 1 2.9347 -4.4418 -3.3117 13 6 3.2020 1.4603 -1.8585 14 8 3.6082 1.6348 -2.9932 15 6 2.8462 2.5724 -1.0539 16 6 2.9574 3.8260 -1.5465 17 6 2.5893 4.9785 -0.7127 18 6 2.1226 4.7804 0.5922 19 6 1.7787 5.8627 1.3718 20 6 1.8931 7.1511 0.8668 21 8 1.5520 8.2143 1.6403 22 6 2.3572 7.3569 -0.4320 23 8 2.4671 8.6206 -0.9224 24 6 2.7098 6.2782 -1.2187 25 1 2.9718 -0.9568 0.3729 26 1 2.9710 0.8026 0.6429 27 1 1.5375 -3.1406 -0.8864 28 1 2.4863 2.4178 -0.0475 29 1 3.3177 3.9807 -2.5529 30 1 2.0320 3.7793 0.9874 31 1 1.4192 5.7086 2.3785 32 1 2.2817 8.5674 2.1674 33 1 3.3274 9.0317 -0.7608 34 1 3.0732 6.4366 -2.2233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779512101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -55.957104 kcal Electronic energy + Delta-G solvation = -21393.418095 eV Core-core repulsion = 17871.199604 eV Total energy + Delta-G solvation = -3522.218491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20072 -40.72308 -38.07665 -37.89888 -37.55897 -36.21172 -34.25747 -33.66352 -31.41469 -29.77135 -29.12406 -27.05804 -24.77061 -23.83185 -22.31292 -20.19565 -19.81306 -19.65963 -18.64995 -18.33051 -18.00654 -17.18461 -16.91079 -16.45125 -15.94232 -15.77560 -15.47052 -15.16995 -14.76413 -14.69956 -14.63358 -13.92978 -13.62236 -13.57008 -13.46217 -13.29536 -13.13577 -12.91228 -12.55349 -12.39568 -12.31891 -12.10035 -12.04185 -11.19904 -11.17137 -10.98363 -10.51455 -9.95798 -9.85278 -9.07441 -8.46800 -5.97298 -0.54355 0.23839 0.89470 1.44599 1.48734 1.61553 1.91531 2.22650 2.35378 2.41037 2.73531 3.02472 3.06872 3.20009 3.26470 3.59090 3.76336 3.82267 4.10216 4.24354 4.31560 4.41343 4.61085 4.79608 4.82779 4.85891 5.09067 5.12644 5.27763 5.38315 5.44406 5.64426 5.70274 6.06377 6.39637 6.64516 6.96837 7.00226 7.09131 7.30012 7.91786 8.56813 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.031358 B = 0.003501 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.699693 B = 7996.746602 C = 8654.851974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.256 3.744 3 C 0.218 3.782 4 N -0.441 5.441 5 C -0.339 4.339 6 H 0.084 0.916 7 C 0.007 3.993 8 N -0.884 5.884 9 Si 0.989 3.011 10 H -0.270 1.270 11 H -0.260 1.260 12 H -0.288 1.288 13 C 0.467 3.533 14 O -0.632 6.632 15 C -0.193 4.193 16 C -0.038 4.038 17 C -0.064 4.064 18 C -0.100 4.100 19 C -0.129 4.129 20 C 0.083 3.917 21 O -0.499 6.499 22 C 0.073 3.927 23 O -0.500 6.500 24 C -0.118 4.118 25 H 0.125 0.875 26 H 0.143 0.857 27 H 0.277 0.723 28 H 0.148 0.852 29 H 0.121 0.879 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.410 0.590 33 H 0.408 0.592 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.075 15.256 10.579 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.062 4.062 3 C 0.092 3.908 4 N -0.158 5.158 5 C -0.467 4.467 6 H 0.102 0.898 7 C -0.196 4.196 8 N -0.521 5.521 9 Si 0.813 3.187 10 H -0.194 1.194 11 H -0.184 1.184 12 H -0.215 1.215 13 C 0.262 3.738 14 O -0.521 6.521 15 C -0.213 4.213 16 C -0.060 4.060 17 C -0.065 4.065 18 C -0.118 4.118 19 C -0.147 4.147 20 C 0.038 3.962 21 O -0.312 6.312 22 C 0.028 3.972 23 O -0.312 6.312 24 C -0.137 4.137 25 H 0.143 0.857 26 H 0.160 0.840 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.139 0.861 30 H 0.164 0.836 31 H 0.175 0.825 32 H 0.269 0.731 33 H 0.267 0.733 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.375 14.965 9.708 18.155 hybrid contribution 1.362 -0.923 -0.429 1.700 sum 4.737 14.042 9.279 17.485 Atomic orbital electron populations 1.80907 1.14710 1.13088 1.09706 1.29694 0.95754 0.89431 0.91320 1.19145 0.80217 1.06335 0.85097 1.43759 1.54808 1.05352 1.11884 1.19703 1.28247 0.85832 1.12913 0.89813 1.26010 0.94946 1.01476 0.97198 1.69899 1.18174 1.25755 1.38299 0.84933 0.78126 0.77157 0.78455 1.19399 1.18418 1.21490 1.17592 0.84386 0.84417 0.87405 1.90636 1.53467 1.86059 1.21943 1.22164 1.05161 0.92595 1.01425 1.22227 0.94039 0.91090 0.98608 1.18920 1.00965 0.92169 0.94407 1.21566 0.97193 1.00325 0.92684 1.21485 1.00655 0.90657 1.01890 1.19054 0.99586 0.87802 0.89796 1.84811 1.40399 1.45954 1.60051 1.18684 1.01313 0.85156 0.92034 1.84877 1.41095 1.25179 1.80097 1.21664 1.00176 0.90874 1.00940 0.85723 0.83955 0.91230 0.83506 0.86140 0.83550 0.82489 0.73067 0.73288 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.37 18.54 20.01 0.37 -23.00 16 2 C 0.26 10.80 13.14 89.44 1.18 11.97 16 3 C 0.22 8.05 4.79 84.57 0.40 8.45 16 4 N -0.44 -20.38 2.59 -655.33 -1.70 -22.08 16 5 C -0.34 -17.53 9.26 84.13 0.78 -16.75 16 6 H 0.08 4.69 7.43 -2.91 -0.02 4.67 16 7 C 0.01 0.35 4.83 84.97 0.41 0.76 16 8 N -0.88 -43.39 9.59 21.69 0.21 -43.18 16 9 Si 0.99 39.11 29.61 68.60 2.03 41.14 16 10 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 12 H -0.29 -11.70 7.11 99.48 0.71 -11.00 16 13 C 0.47 21.56 7.34 85.12 0.62 22.18 16 14 O -0.63 -34.49 15.78 -4.61 -0.07 -34.56 16 15 C -0.19 -6.71 8.30 22.44 0.19 -6.52 16 16 C -0.04 -1.21 9.41 23.84 0.22 -0.98 16 17 C -0.06 -1.64 5.87 -20.15 -0.12 -1.75 16 18 C -0.10 -2.17 9.40 22.58 0.21 -1.95 16 19 C -0.13 -2.41 9.96 22.30 0.22 -2.19 16 20 C 0.08 1.64 6.73 22.71 0.15 1.79 16 21 O -0.50 -8.30 13.27 -77.66 -1.03 -9.33 16 22 C 0.07 1.55 6.71 22.53 0.15 1.70 16 23 O -0.50 -9.20 13.28 -79.48 -1.06 -10.26 16 24 C -0.12 -2.71 9.72 22.66 0.22 -2.49 16 25 H 0.13 4.63 6.63 -2.39 -0.02 4.62 16 26 H 0.14 3.60 6.44 -2.38 -0.02 3.59 16 27 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 28 H 0.15 4.06 4.08 -2.91 -0.01 4.05 16 29 H 0.12 4.13 7.45 -2.91 -0.02 4.11 16 30 H 0.15 2.79 6.15 -2.91 -0.02 2.77 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.41 2.23 9.06 -74.06 -0.67 1.56 16 33 H 0.41 2.99 9.06 -74.05 -0.67 2.32 16 34 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -75.01 310.16 3.26 -71.75 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -0.14 Total: 15.30 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 4.65 Total: 14.21 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -1.12 Total: -88.26 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -2.16 Total: -54.15 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -75.01 3.26 -71.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779512101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.792 kcal (2) G-P(sol) polarization free energy of solvation -75.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds