Wall clock time and date at job start Tue Mar 31 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48494 * 109.47119 * 274.66390 * 3 2 1 5 5 H 1.48501 * 109.47377 * 34.66730 * 3 2 1 6 6 H 1.48501 * 109.47174 * 154.66651 * 3 2 1 7 7 C 1.39939 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00413 * 162.22542 * 7 2 1 9 9 C 1.41402 * 120.00390 * 342.23410 * 7 2 1 10 10 C 1.40712 * 120.24573 * 155.28401 * 9 7 2 11 11 C 1.37617 * 119.74263 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24922 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.75101 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.47537 * 89.99661 * 13 12 11 15 15 N 1.41591 * 114.00120 * 179.97438 * 14 13 12 16 16 C 1.37008 * 120.00148 * 180.02562 * 15 14 13 17 17 N 1.29323 * 119.99756 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00133 * 180.02562 * 16 15 14 19 19 F 1.39903 * 109.47115 * 180.02562 * 18 16 15 20 20 F 1.39907 * 109.47134 * 299.99471 * 18 16 15 21 21 F 1.39901 * 109.47673 * 59.99742 * 18 16 15 22 22 C 1.38635 * 120.50175 * 0.25045 * 12 11 10 23 23 C 1.37621 * 120.24689 * 359.45414 * 22 12 11 24 24 H 0.97003 * 119.99697 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.12693 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.87860 * 179.97438 * 11 10 9 27 27 H 1.08999 * 109.46978 * 329.99518 * 13 12 11 28 28 H 1.09006 * 109.46869 * 210.00170 * 13 12 11 29 29 H 0.97000 * 120.00431 * 0.02562 * 15 14 13 30 30 H 0.96998 * 120.00391 * 179.97438 * 17 16 15 31 31 H 1.08008 * 119.87623 * 179.70171 * 22 12 11 32 32 H 1.07995 * 120.12632 * 180.27282 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7964 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2119 0.0005 8 1 3.0493 -1.2344 -0.2850 9 6 1.3516 -2.4072 0.3747 10 6 1.8218 -3.6493 -0.0899 11 6 1.1748 -4.8061 0.2803 12 6 0.0635 -4.7507 1.1072 13 6 -0.6368 -6.0245 1.5051 14 8 -0.0594 -6.5289 2.7110 15 7 -0.6494 -7.7300 3.1736 16 6 -0.1903 -8.3211 4.3212 17 7 0.7817 -7.7818 4.9821 18 6 -0.8179 -9.5998 4.8132 19 9 -0.1849 -10.0062 5.9928 20 9 -2.1775 -9.3855 5.0641 21 9 -0.6744 -10.5945 3.8399 22 6 -0.4119 -3.5321 1.5663 23 6 0.2229 -2.3630 1.2139 24 1 -0.4850 0.8401 0.0004 25 1 2.6871 -3.6947 -0.7346 26 1 1.5336 -5.7607 -0.0754 27 1 -0.5249 -6.7636 0.7119 28 1 -1.6956 -5.8218 1.6663 29 1 -1.3787 -8.1344 2.6781 30 1 1.1065 -8.2001 5.7947 31 1 -1.2814 -3.5003 2.2063 32 1 -0.1465 -1.4151 1.5762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784054939.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:39 Heat of formation + Delta-G solvation = -98.265050 kcal Electronic energy + Delta-G solvation = -21554.615448 eV Core-core repulsion = 17488.705606 eV Total energy + Delta-G solvation = -4065.909842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.65376 -48.22607 -48.08813 -38.35233 -37.50399 -35.73092 -33.83612 -31.43330 -30.11249 -29.36956 -27.35783 -26.52846 -23.69611 -21.57764 -21.11287 -20.26185 -19.33569 -18.99599 -18.99082 -17.42386 -17.33863 -16.08845 -15.47379 -15.14347 -14.99994 -14.91361 -14.55143 -14.48819 -14.25349 -14.24631 -13.89660 -13.61357 -13.49460 -12.93562 -12.54010 -12.49622 -12.04671 -11.59831 -11.25042 -11.12346 -10.69685 -10.61918 -10.31669 -9.86458 -9.69867 -9.49130 -9.22946 -8.30223 -7.57753 -7.47594 -6.88740 -4.47638 1.36366 1.81164 2.41401 2.70131 2.99892 3.02487 3.05153 3.11956 3.26563 3.62458 3.85231 3.88251 4.32893 4.63606 5.38653 5.53626 5.56831 5.78347 5.99797 6.23450 6.29481 6.66663 6.86045 6.96081 7.15986 7.24364 7.41637 7.50238 7.72388 7.94736 7.97867 8.07449 8.17803 8.52463 8.77345 8.85180 10.05382 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.041022 B = 0.002760 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.404166 B =10142.340215 C =10198.380700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.230 4.230 11 C -0.061 4.061 12 C -0.229 4.229 13 C 0.097 3.903 14 O -0.116 6.116 15 N -0.577 5.577 16 C 0.381 3.619 17 N -0.683 5.683 18 C 0.467 3.533 19 F -0.164 7.164 20 F -0.169 7.169 21 F -0.169 7.169 22 C -0.073 4.073 23 C -0.170 4.170 24 H 0.283 0.717 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.416 0.584 30 H 0.356 0.644 31 H 0.089 0.911 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 -13.984 6.127 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.250 4.250 11 C -0.080 4.080 12 C -0.232 4.232 13 C 0.021 3.979 14 O -0.119 6.119 15 N -0.265 5.265 16 C 0.091 3.909 17 N -0.317 5.317 18 C 0.406 3.594 19 F -0.146 7.146 20 F -0.151 7.151 21 F -0.151 7.151 22 C -0.092 4.092 23 C -0.189 4.189 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.257 0.743 30 H 0.177 0.823 31 H 0.108 0.892 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.666 -12.776 6.076 14.615 hybrid contribution -0.525 -0.445 0.152 0.705 sum -4.191 -13.222 6.227 15.204 Atomic orbital electron populations 1.69823 1.07702 1.29541 1.33954 1.25974 0.94770 1.01575 0.92026 0.86271 0.80842 0.80374 0.79148 1.19458 1.19899 1.18259 1.19691 0.98248 0.91261 1.39203 0.90122 1.17691 0.90734 0.92090 0.87755 1.20949 1.03901 0.92795 1.07340 1.20376 0.94144 0.96663 0.96802 1.18425 1.03628 0.90678 1.10456 1.21732 0.96816 0.94542 0.84805 1.90916 1.53129 1.24007 1.43816 1.45033 1.37542 1.20616 1.23320 1.20998 0.92754 0.87255 0.89865 1.68950 1.13053 1.35037 1.14631 1.20017 0.77081 0.85974 0.76309 1.93205 1.81999 1.91149 1.48230 1.93267 1.32817 1.94739 1.94237 1.93264 1.95375 1.64115 1.62312 1.20528 0.98161 0.92507 0.98015 1.21287 0.99389 0.96763 1.01484 0.90631 0.88665 0.89222 0.92936 0.92845 0.74269 0.82315 0.89244 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.68 10.97 55.55 0.61 -19.07 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.80 9.05 -37.74 -0.34 -12.15 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.12 3.15 5.57 -106.82 -0.60 2.55 16 10 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 11 C -0.06 -1.36 9.67 -39.66 -0.38 -1.74 16 12 C -0.23 -4.92 5.53 -104.33 -0.58 -5.50 16 13 C 0.10 1.64 6.34 36.01 0.23 1.87 16 14 O -0.12 -2.09 11.09 -11.47 -0.13 -2.22 16 15 N -0.58 -7.75 6.49 32.83 0.21 -7.54 16 16 C 0.38 4.93 7.50 -154.56 -1.16 3.77 16 17 N -0.68 -10.16 13.60 32.89 0.45 -9.71 16 18 C 0.47 4.70 3.45 36.00 0.12 4.83 16 19 F -0.16 -1.61 16.12 2.25 0.04 -1.57 16 20 F -0.17 -1.66 17.30 2.25 0.04 -1.62 16 21 F -0.17 -1.64 17.30 2.25 0.04 -1.61 16 22 C -0.07 -1.69 9.67 -39.66 -0.38 -2.07 16 23 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 24 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 25 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 26 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 27 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 29 H 0.42 4.10 8.57 -40.82 -0.35 3.75 16 30 H 0.36 4.35 7.65 -40.82 -0.31 4.04 16 31 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 32 H 0.12 3.13 6.18 -52.49 -0.32 2.81 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -28.29 303.13 -5.74 -34.03 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -2.64 Total: 8.96 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -3.90 Total: -17.31 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 1.27 Total: -36.32 kcal Atomic # 8 Polarization: -2.09 SS G_CDS: -0.13 Total: -2.22 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.79 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.29 -5.74 -34.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784054939.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.234 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds