Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47069 * 2 1 4 4 C 1.50696 * 109.46706 * 119.99383 * 2 1 3 5 5 O 1.21216 * 119.99925 * 120.00318 * 4 2 1 6 6 O 1.34313 * 120.00225 * 300.00062 * 4 2 1 7 7 C 1.34924 * 117.00019 * 180.02562 * 6 4 2 8 8 H 1.08004 * 119.99682 * 359.72874 * 7 6 4 9 9 C 1.38745 * 119.99953 * 179.97438 * 7 6 4 10 10 N 1.31442 * 120.00252 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00064 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47055 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47016 * 120.00198 * 11 9 7 14 14 H 1.48500 * 109.47415 * 240.00199 * 11 9 7 15 15 C 1.50694 * 109.47091 * 239.99383 * 2 1 3 16 16 C 1.38234 * 120.00320 * 299.72871 * 15 2 1 17 17 C 1.38235 * 120.00293 * 179.78758 * 16 15 2 18 18 C 1.38237 * 119.99915 * 0.44527 * 17 16 15 19 19 C 1.50701 * 120.00129 * 179.83350 * 18 17 16 20 20 F 1.39897 * 109.46819 * 269.97205 * 19 18 17 21 21 F 1.39894 * 109.47214 * 29.97462 * 19 18 17 22 22 F 1.39902 * 109.47136 * 149.97735 * 19 18 17 23 23 C 1.38237 * 119.99711 * 359.80559 * 18 17 16 24 24 C 1.38234 * 120.00417 * 359.97438 * 23 18 17 25 25 H 1.08995 * 109.47319 * 300.00740 * 1 2 3 26 26 H 1.09003 * 109.46631 * 60.00474 * 1 2 3 27 27 H 1.08997 * 109.47406 * 180.02562 * 1 2 3 28 28 H 0.97005 * 120.00277 * 179.97438 * 10 9 7 29 29 H 1.08001 * 119.99636 * 359.97438 * 16 15 2 30 30 H 1.07996 * 120.00440 * 180.27159 * 17 16 15 31 31 H 1.08005 * 120.00077 * 180.02562 * 23 18 17 32 32 H 1.07996 * 119.99945 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7292 -1.6958 1.1194 6 8 1.7077 -0.2513 2.4504 7 6 2.1905 -0.9332 3.5098 8 1 2.8043 -1.8082 3.3546 9 6 1.8943 -0.5132 4.7986 10 7 1.1429 0.5486 4.9875 11 14 2.5621 -1.4576 6.2654 12 1 3.3737 -2.6056 5.7871 13 1 3.4123 -0.5591 7.0872 14 1 1.4318 -1.9586 7.0879 15 6 2.0324 -0.7105 -1.2303 16 6 1.7031 -2.0356 -1.4462 17 6 2.1602 -2.6861 -2.5770 18 6 2.9543 -2.0141 -3.4874 19 6 3.4558 -2.7244 -4.7183 20 9 4.6887 -3.3244 -4.4407 21 9 2.5344 -3.7060 -5.0983 22 9 3.6100 -1.8018 -5.7587 23 6 3.2879 -0.6905 -3.2690 24 6 2.8270 -0.0387 -2.1404 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.9355 0.8420 5.8885 29 1 1.0861 -2.5618 -0.7328 30 1 1.8993 -3.7200 -2.7479 31 1 3.9080 -0.1654 -3.9804 32 1 3.0880 0.9952 -1.9696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798784573.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -213.749155 kcal Electronic energy + Delta-G solvation = -22266.397211 eV Core-core repulsion = 18163.186851 eV Total energy + Delta-G solvation = -4103.210359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.21803 -47.74599 -47.66966 -39.97269 -38.67712 -35.49029 -34.03021 -32.18710 -31.10825 -30.38764 -26.02496 -25.66690 -23.79191 -22.89710 -21.73816 -19.62352 -18.55082 -18.46639 -18.42820 -17.76483 -16.59300 -15.79224 -15.30923 -14.80613 -14.62741 -14.50864 -14.46639 -14.30122 -14.24309 -14.14869 -13.91628 -13.84681 -13.43937 -13.07321 -12.77179 -12.75189 -12.02930 -11.85226 -11.64444 -11.47775 -11.25301 -11.01740 -10.86975 -10.43468 -10.40200 -9.83654 -9.15331 -8.92914 -8.89598 -8.62338 -6.45810 -4.13653 0.94167 1.34224 2.61911 3.06073 3.16508 3.23638 3.44762 3.48105 3.68231 3.93672 3.98391 4.38181 4.49614 4.74303 4.84059 4.85334 5.06828 5.31550 5.37805 5.48401 5.52831 5.68063 5.86534 5.96674 6.10218 6.17841 6.21863 6.40545 6.62354 6.69842 6.86540 7.35786 7.90400 8.65248 9.03440 9.79563 10.72003 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.003528 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.608017 B = 7934.891182 C = 8329.004011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 H 0.106 0.894 4 C 0.400 3.600 5 O -0.548 6.548 6 O -0.210 6.210 7 C -0.382 4.382 8 H 0.096 0.904 9 C 0.043 3.957 10 N -0.864 5.864 11 Si 0.941 3.059 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.023 4.023 16 C -0.082 4.082 17 C -0.073 4.073 18 C -0.192 4.192 19 C 0.510 3.490 20 F -0.178 7.178 21 F -0.179 7.179 22 F -0.180 7.180 23 C -0.075 4.075 24 C -0.114 4.114 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.269 0.731 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 -1.677 -16.382 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 H 0.124 0.876 4 C 0.246 3.754 5 O -0.445 6.445 6 O -0.117 6.117 7 C -0.458 4.458 8 H 0.114 0.886 9 C -0.161 4.161 10 N -0.501 5.501 11 Si 0.766 3.234 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.201 1.201 15 C -0.023 4.023 16 C -0.099 4.099 17 C -0.092 4.092 18 C -0.193 4.193 19 C 0.456 3.544 20 F -0.159 7.159 21 F -0.161 7.161 22 F -0.162 7.162 23 C -0.093 4.093 24 C -0.132 4.132 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.480 -1.824 -16.243 16.352 hybrid contribution 0.509 -0.553 0.563 0.940 sum 0.990 -2.378 -15.680 15.890 Atomic orbital electron populations 1.21757 0.91630 1.02934 1.03199 1.19819 0.98026 0.99898 0.88557 0.87566 1.22834 0.81838 0.84889 0.85827 1.90590 1.38982 1.27582 1.87364 1.83862 1.63458 1.51770 1.12608 1.21280 1.31829 1.10889 0.81840 0.88638 1.25318 0.96326 0.96531 0.97935 1.69994 1.34664 1.22890 1.22581 0.85637 0.78687 0.79228 0.79860 1.18952 1.20146 1.20143 1.19755 0.94443 0.94145 0.94007 1.20992 0.99254 0.93926 0.95777 1.20865 0.95318 0.99935 0.93035 1.19876 1.06469 0.96515 0.96471 1.18348 0.75378 0.76905 0.83776 1.93224 1.44586 1.84452 1.93674 1.93173 1.66432 1.64127 1.92353 1.93170 1.95623 1.66225 1.61156 1.20792 0.98333 0.92559 0.97649 1.21022 0.97776 1.00590 0.93823 0.90137 0.91887 0.92161 0.92101 0.84807 0.84932 0.84934 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.70 16 2 C -0.04 -0.74 3.01 -92.93 -0.28 -1.02 16 3 H 0.11 1.61 7.88 -51.93 -0.41 1.20 16 4 C 0.40 9.35 7.07 36.00 0.25 9.61 16 5 O -0.55 -14.06 14.32 -19.06 -0.27 -14.33 16 6 O -0.21 -5.76 9.65 -20.72 -0.20 -5.96 16 7 C -0.38 -11.02 9.64 30.92 0.30 -10.72 16 8 H 0.10 2.79 6.86 -52.48 -0.36 2.44 16 9 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 10 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 11 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 C -0.02 -0.36 4.40 -104.63 -0.46 -0.82 16 16 C -0.08 -1.25 7.92 -39.58 -0.31 -1.56 16 17 C -0.07 -0.99 9.40 -39.58 -0.37 -1.37 16 18 C -0.19 -2.50 5.45 -104.62 -0.57 -3.07 16 19 C 0.51 6.24 3.36 36.01 0.12 6.36 16 20 F -0.18 -2.33 17.30 2.25 0.04 -2.29 16 21 F -0.18 -2.17 16.46 2.25 0.04 -2.14 16 22 F -0.18 -2.11 16.46 2.25 0.04 -2.07 16 23 C -0.08 -0.92 9.40 -39.58 -0.37 -1.30 16 24 C -0.11 -1.49 9.67 -39.58 -0.38 -1.88 16 25 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.88 7.41 -51.93 -0.38 0.49 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.13 2.09 7.52 -52.49 -0.39 1.69 16 30 H 0.13 1.54 7.60 -52.49 -0.40 1.15 16 31 H 0.13 1.32 7.60 -52.48 -0.40 0.92 16 32 H 0.13 1.43 7.95 -52.49 -0.42 1.02 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -31.71 299.88 -4.69 -36.40 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.74 Total: 0.27 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.84 Total: -6.38 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.76 Total: -23.93 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.47 Total: -20.29 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.11 Total: -6.50 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.71 -4.69 -36.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798784573.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.351 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds