Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47069 * 2 1 4 4 C 1.50696 * 109.46706 * 119.99383 * 2 1 3 5 5 O 1.21216 * 119.99925 * 120.00318 * 4 2 1 6 6 O 1.34313 * 120.00225 * 300.00062 * 4 2 1 7 7 C 1.34924 * 117.00019 * 180.02562 * 6 4 2 8 8 H 1.08004 * 119.99682 * 359.72874 * 7 6 4 9 9 C 1.38745 * 119.99953 * 179.97438 * 7 6 4 10 10 N 1.31442 * 120.00252 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00064 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47055 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47016 * 120.00198 * 11 9 7 14 14 H 1.48500 * 109.47415 * 240.00199 * 11 9 7 15 15 C 1.50694 * 109.47091 * 239.99383 * 2 1 3 16 16 C 1.38234 * 120.00320 * 299.72871 * 15 2 1 17 17 C 1.38235 * 120.00293 * 179.78758 * 16 15 2 18 18 C 1.38237 * 119.99915 * 0.44527 * 17 16 15 19 19 C 1.50701 * 120.00129 * 179.83350 * 18 17 16 20 20 F 1.39897 * 109.46819 * 269.97205 * 19 18 17 21 21 F 1.39894 * 109.47214 * 29.97462 * 19 18 17 22 22 F 1.39902 * 109.47136 * 149.97735 * 19 18 17 23 23 C 1.38237 * 119.99711 * 359.80559 * 18 17 16 24 24 C 1.38234 * 120.00417 * 359.97438 * 23 18 17 25 25 H 1.08995 * 109.47319 * 300.00740 * 1 2 3 26 26 H 1.09003 * 109.46631 * 60.00474 * 1 2 3 27 27 H 1.08997 * 109.47406 * 180.02562 * 1 2 3 28 28 H 0.97005 * 120.00277 * 179.97438 * 10 9 7 29 29 H 1.08001 * 119.99636 * 359.97438 * 16 15 2 30 30 H 1.07996 * 120.00440 * 180.27159 * 17 16 15 31 31 H 1.08005 * 120.00077 * 180.02562 * 23 18 17 32 32 H 1.07996 * 119.99945 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7292 -1.6958 1.1194 6 8 1.7077 -0.2513 2.4504 7 6 2.1905 -0.9332 3.5098 8 1 2.8043 -1.8082 3.3546 9 6 1.8943 -0.5132 4.7986 10 7 1.1429 0.5486 4.9875 11 14 2.5621 -1.4576 6.2654 12 1 3.3737 -2.6056 5.7871 13 1 3.4123 -0.5591 7.0872 14 1 1.4318 -1.9586 7.0879 15 6 2.0324 -0.7105 -1.2303 16 6 1.7031 -2.0356 -1.4462 17 6 2.1602 -2.6861 -2.5770 18 6 2.9543 -2.0141 -3.4874 19 6 3.4558 -2.7244 -4.7183 20 9 4.6887 -3.3244 -4.4407 21 9 2.5344 -3.7060 -5.0983 22 9 3.6100 -1.8018 -5.7587 23 6 3.2879 -0.6905 -3.2690 24 6 2.8270 -0.0387 -2.1404 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.9355 0.8420 5.8885 29 1 1.0861 -2.5618 -0.7328 30 1 1.8993 -3.7200 -2.7479 31 1 3.9080 -0.1654 -3.9804 32 1 3.0880 0.9952 -1.9696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798784573.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = -230.878084 kcal Electronic energy + Delta-G solvation = -22267.139977 eV Core-core repulsion = 18163.186851 eV Total energy + Delta-G solvation = -4103.953126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.19092 -48.69919 -48.66045 -41.46809 -40.20506 -37.34647 -35.46944 -34.27323 -32.15252 -31.55088 -27.68595 -27.10063 -25.22142 -23.98220 -23.04753 -21.16742 -19.85477 -19.53080 -19.46868 -19.41408 -18.36956 -17.09415 -16.94438 -16.34154 -16.09448 -15.86624 -15.74590 -15.50373 -15.37082 -15.11327 -14.90695 -14.81698 -14.59216 -14.49974 -14.15140 -13.90189 -13.63249 -13.38261 -13.02872 -13.00984 -12.65408 -12.38459 -12.23618 -12.11321 -12.05232 -11.88610 -10.92398 -10.68973 -10.08553 -10.02080 -8.53746 -6.32879 -0.15231 0.29612 1.29472 1.34614 1.51957 1.62795 1.64511 2.08404 2.38449 2.68560 2.88896 2.98075 3.01136 3.40878 3.47490 3.76911 3.87517 4.13499 4.18207 4.35889 4.43050 4.53819 4.69990 4.85941 4.89783 4.95718 5.11619 5.13373 5.17950 5.29926 5.50459 5.74380 5.83999 6.67708 6.92253 7.77731 8.66758 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.003528 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.608017 B = 7934.891182 C = 8329.004011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.034 4.034 3 H 0.129 0.871 4 C 0.399 3.601 5 O -0.575 6.575 6 O -0.239 6.239 7 C -0.419 4.419 8 H 0.079 0.921 9 C -0.001 4.001 10 N -0.900 5.900 11 Si 1.013 2.987 12 H -0.267 1.267 13 H -0.260 1.260 14 H -0.260 1.260 15 C -0.043 4.043 16 C -0.100 4.100 17 C -0.077 4.077 18 C -0.195 4.195 19 C 0.516 3.484 20 F -0.183 7.183 21 F -0.179 7.179 22 F -0.174 7.174 23 C -0.070 4.070 24 C -0.110 4.110 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.278 0.722 29 H 0.118 0.882 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -1.247 -17.398 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 H 0.147 0.853 4 C 0.247 3.753 5 O -0.472 6.472 6 O -0.147 6.147 7 C -0.495 4.495 8 H 0.097 0.903 9 C -0.202 4.202 10 N -0.538 5.538 11 Si 0.832 3.168 12 H -0.191 1.191 13 H -0.185 1.185 14 H -0.185 1.185 15 C -0.044 4.044 16 C -0.118 4.118 17 C -0.095 4.095 18 C -0.196 4.196 19 C 0.462 3.538 20 F -0.164 7.164 21 F -0.160 7.160 22 F -0.156 7.156 23 C -0.088 4.088 24 C -0.128 4.128 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.179 0.821 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.972 -1.388 -17.284 17.367 hybrid contribution 0.369 -0.705 0.721 1.074 sum 1.341 -2.093 -16.563 16.748 Atomic orbital electron populations 1.21738 0.90056 1.02980 1.04137 1.19928 0.99307 1.00238 0.85867 0.85345 1.24200 0.80266 0.84445 0.86406 1.90554 1.39947 1.28907 1.87785 1.83889 1.64533 1.52504 1.13779 1.21402 1.33314 1.11477 0.83298 0.90330 1.26430 0.96048 0.97337 1.00345 1.70066 1.35543 1.24207 1.23941 0.84634 0.78524 0.77814 0.75829 1.19116 1.18485 1.18461 1.19739 0.96139 0.94402 0.94076 1.20975 1.00064 0.94338 0.96398 1.20988 0.95281 1.00633 0.92606 1.20057 1.06012 0.97039 0.96515 1.18181 0.75116 0.76855 0.83605 1.93219 1.44915 1.84557 1.93733 1.93178 1.66386 1.64122 1.92316 1.93184 1.95575 1.65978 1.60819 1.21141 0.97754 0.92243 0.97680 1.21311 0.96428 1.01805 0.93234 0.91991 0.87973 0.92655 0.91235 0.86350 0.83642 0.82101 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.94 71.98 0.64 -3.17 16 2 C -0.03 -1.15 3.01 -12.29 -0.04 -1.19 16 3 H 0.13 3.69 7.88 -2.39 -0.02 3.67 16 4 C 0.40 19.16 7.07 71.23 0.50 19.66 16 5 O -0.57 -30.40 14.32 20.76 0.30 -30.10 16 6 O -0.24 -13.58 9.65 14.80 0.14 -13.44 16 7 C -0.42 -25.00 9.64 67.94 0.66 -24.35 16 8 H 0.08 4.81 6.86 -2.91 -0.02 4.79 16 9 C 0.00 -0.06 5.49 84.87 0.47 0.40 16 10 N -0.90 -52.08 13.67 21.62 0.30 -51.78 16 11 Si 1.01 42.98 29.55 68.60 2.03 45.01 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 14 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 15 C -0.04 -1.29 4.40 -19.87 -0.09 -1.37 16 16 C -0.10 -3.03 7.92 22.27 0.18 -2.85 16 17 C -0.08 -2.01 9.40 22.27 0.21 -1.80 16 18 C -0.19 -4.66 5.45 -19.86 -0.11 -4.77 16 19 C 0.52 11.50 3.36 71.24 0.24 11.74 16 20 F -0.18 -4.44 17.30 44.97 0.78 -3.66 16 21 F -0.18 -4.00 16.46 44.97 0.74 -3.26 16 22 F -0.17 -3.60 16.46 44.97 0.74 -2.86 16 23 C -0.07 -1.52 9.40 22.27 0.21 -1.31 16 24 C -0.11 -2.59 9.67 22.27 0.22 -2.37 16 25 H 0.06 2.02 8.11 -2.39 -0.02 2.00 16 26 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.63 7.41 -2.39 -0.02 1.61 16 28 H 0.28 14.58 8.31 -92.70 -0.77 13.81 16 29 H 0.12 3.86 7.52 -2.91 -0.02 3.83 16 30 H 0.15 3.28 7.60 -2.91 -0.02 3.26 16 31 H 0.16 2.54 7.60 -2.91 -0.02 2.51 16 32 H 0.16 2.84 7.95 -2.91 -0.02 2.82 16 Total: -1.00 -70.10 299.88 9.27 -60.83 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.17 Total: 10.64 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 3.09 Total: -11.38 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.30 Total: -51.78 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: 0.44 Total: -43.54 kcal Atomic # 9 Polarization: -12.04 SS G_CDS: 2.26 Total: -9.78 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -70.10 9.27 -60.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798784573.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.048 kcal (2) G-P(sol) polarization free energy of solvation -70.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds