Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47084 * 2 1 4 4 C 1.50693 * 109.47336 * 239.99385 * 2 1 3 5 5 O 1.21213 * 120.00493 * 240.00372 * 4 2 1 6 6 O 1.34310 * 119.99805 * 59.72626 * 4 2 1 7 7 C 1.34922 * 117.00349 * 180.27868 * 6 4 2 8 8 H 1.08003 * 119.99659 * 359.97438 * 7 6 4 9 9 C 1.38755 * 120.00272 * 179.97438 * 7 6 4 10 10 N 1.31441 * 120.00098 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47079 * 60.00337 * 11 9 7 13 13 H 1.48500 * 109.46664 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47336 * 300.00039 * 11 9 7 15 15 C 1.50708 * 109.47186 * 119.99446 * 2 1 3 16 16 C 1.38237 * 119.99835 * 59.72584 * 15 2 1 17 17 C 1.38232 * 119.99671 * 179.76832 * 16 15 2 18 18 C 1.38233 * 120.00435 * 0.50542 * 17 16 15 19 19 C 1.50691 * 120.00237 * 179.72730 * 18 17 16 20 20 F 1.39901 * 109.47246 * 270.02111 * 19 18 17 21 21 F 1.39902 * 109.47526 * 30.01914 * 19 18 17 22 22 F 1.39902 * 109.47422 * 150.02238 * 19 18 17 23 23 C 1.38240 * 119.99556 * 359.74785 * 18 17 16 24 24 C 1.38232 * 120.00081 * 0.02562 * 23 18 17 25 25 H 1.09003 * 109.47049 * 300.00335 * 1 2 3 26 26 H 1.08993 * 109.46915 * 59.99943 * 1 2 3 27 27 H 1.08996 * 109.46830 * 180.02562 * 1 2 3 28 28 H 0.96993 * 120.00374 * 179.97438 * 10 9 7 29 29 H 1.07996 * 119.99938 * 0.02562 * 16 15 2 30 30 H 1.08001 * 119.99863 * 180.23220 * 17 16 15 31 31 H 1.07996 * 119.99781 * 179.97438 * 23 18 17 32 32 H 1.08001 * 119.99776 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7292 -1.6960 -1.1191 6 8 1.7034 -0.2550 -2.4502 7 6 2.1813 -0.9404 -3.5095 8 1 2.7989 -1.8127 -3.3542 9 6 1.8793 -0.5247 -4.7985 10 7 1.1282 0.5372 -4.9875 11 14 2.5417 -1.4734 -6.2650 12 1 2.0465 -2.8724 -6.2141 13 1 2.0793 -0.8294 -7.5207 14 1 4.0261 -1.4719 -6.2261 15 6 2.0324 -0.7103 1.2306 16 6 1.6937 -2.0321 1.4523 17 6 2.1585 -2.6850 2.5786 18 6 2.9532 -2.0132 3.4885 19 6 3.4548 -2.7232 4.7194 20 9 2.5328 -2.5618 5.7592 21 9 3.6101 -4.0855 4.4413 22 9 4.6871 -2.1816 5.1007 23 6 3.2875 -0.6899 3.2694 24 6 2.8267 -0.0383 2.1407 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.9174 0.8281 -5.8885 29 1 1.0695 -2.5558 0.7435 30 1 1.8970 -3.7188 2.7499 31 1 3.9081 -0.1648 3.9804 32 1 3.0875 0.9957 1.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798784574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = -213.633171 kcal Electronic energy + Delta-G solvation = -22265.649026 eV Core-core repulsion = 18162.443696 eV Total energy + Delta-G solvation = -4103.205330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.21659 -47.72954 -47.68484 -39.97141 -38.67713 -35.48713 -34.03145 -32.18628 -31.10981 -30.38582 -26.02362 -25.66384 -23.79387 -22.89514 -21.73743 -19.62135 -18.55826 -18.46855 -18.41852 -17.76261 -16.58744 -15.78848 -15.30734 -14.81493 -14.64280 -14.52729 -14.46207 -14.29629 -14.22401 -14.14024 -13.92764 -13.84597 -13.43351 -13.03751 -12.81643 -12.74465 -12.01457 -11.84640 -11.65014 -11.48300 -11.23247 -11.00816 -10.86273 -10.49483 -10.38324 -9.84716 -9.15221 -8.93035 -8.89527 -8.61487 -6.45384 -4.13374 0.94216 1.34137 2.61935 3.09385 3.16139 3.19831 3.45204 3.47862 3.68418 3.93855 3.98711 4.37809 4.49746 4.74316 4.84070 4.85352 5.07094 5.31642 5.37790 5.48290 5.52804 5.68046 5.86552 5.96671 6.10281 6.17846 6.21830 6.40698 6.62446 6.69898 6.86633 7.35251 7.90624 8.65282 9.03570 9.79747 10.72312 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.032202 B = 0.003527 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.315428 B = 7935.728413 C = 8329.682361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 H 0.106 0.894 4 C 0.400 3.600 5 O -0.549 6.549 6 O -0.209 6.209 7 C -0.383 4.383 8 H 0.095 0.905 9 C 0.044 3.956 10 N -0.865 5.865 11 Si 0.943 3.057 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.270 1.270 15 C -0.023 4.023 16 C -0.082 4.082 17 C -0.073 4.073 18 C -0.192 4.192 19 C 0.510 3.490 20 F -0.180 7.180 21 F -0.178 7.178 22 F -0.180 7.180 23 C -0.075 4.075 24 C -0.115 4.115 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.270 0.730 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -1.628 16.355 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 H 0.124 0.876 4 C 0.246 3.754 5 O -0.445 6.445 6 O -0.116 6.116 7 C -0.460 4.460 8 H 0.112 0.888 9 C -0.161 4.161 10 N -0.502 5.502 11 Si 0.767 3.233 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.195 1.195 15 C -0.023 4.023 16 C -0.100 4.100 17 C -0.091 4.091 18 C -0.194 4.194 19 C 0.456 3.544 20 F -0.161 7.161 21 F -0.160 7.160 22 F -0.161 7.161 23 C -0.093 4.093 24 C -0.132 4.132 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.469 -1.767 16.211 16.313 hybrid contribution 0.524 -0.572 -0.554 0.953 sum 0.993 -2.339 15.656 15.861 Atomic orbital electron populations 1.21757 0.91626 1.02935 1.03202 1.19820 0.98019 0.99894 0.88562 0.87575 1.22829 0.81859 0.84903 0.85821 1.90587 1.39037 1.27560 1.87364 1.83859 1.63447 1.51732 1.12598 1.21176 1.31920 1.10989 0.81868 0.88753 1.25315 0.96298 0.96520 0.97921 1.69971 1.34525 1.22869 1.22786 0.85755 0.79290 0.79194 0.79027 1.19472 1.20346 1.19487 1.19755 0.94394 0.94151 0.93983 1.20991 0.99224 0.93933 0.95876 1.20862 0.95240 0.99845 0.93152 1.19872 1.06649 0.96585 0.96255 1.18348 0.75209 0.76948 0.83898 1.93209 1.66430 1.95337 1.61167 1.93185 1.95518 1.33609 1.93660 1.93176 1.44750 1.85763 1.92403 1.20792 0.98185 0.92563 0.97758 1.21020 0.97819 1.00564 0.93843 0.91892 0.90125 0.92159 0.91990 0.84816 0.84932 0.84934 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.93 37.16 0.33 -1.71 16 2 C -0.04 -0.74 3.01 -92.92 -0.28 -1.02 16 3 H 0.11 1.61 7.88 -51.93 -0.41 1.20 16 4 C 0.40 9.36 7.08 36.00 0.25 9.61 16 5 O -0.55 -14.07 14.36 -19.05 -0.27 -14.34 16 6 O -0.21 -5.75 9.64 -20.71 -0.20 -5.95 16 7 C -0.38 -11.06 9.65 30.92 0.30 -10.76 16 8 H 0.09 2.75 6.86 -52.48 -0.36 2.39 16 9 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 10 N -0.86 -24.70 13.67 55.48 0.76 -23.94 16 11 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 15 C -0.02 -0.35 4.39 -104.62 -0.46 -0.81 16 16 C -0.08 -1.26 7.94 -39.58 -0.31 -1.57 16 17 C -0.07 -0.99 9.40 -39.59 -0.37 -1.36 16 18 C -0.19 -2.51 5.45 -104.63 -0.57 -3.08 16 19 C 0.51 6.24 3.36 36.00 0.12 6.36 16 20 F -0.18 -2.17 17.30 2.25 0.04 -2.13 16 21 F -0.18 -2.26 16.46 2.25 0.04 -2.22 16 22 F -0.18 -2.19 16.46 2.25 0.04 -2.15 16 23 C -0.07 -0.92 9.40 -39.58 -0.37 -1.29 16 24 C -0.11 -1.50 9.67 -39.59 -0.38 -1.88 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.31 8.11 -51.93 -0.42 0.88 16 27 H 0.06 0.88 7.37 -51.93 -0.38 0.50 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.13 2.08 7.52 -52.49 -0.39 1.69 16 30 H 0.13 1.55 7.60 -52.49 -0.40 1.15 16 31 H 0.13 1.32 7.60 -52.49 -0.40 0.92 16 32 H 0.13 1.43 7.95 -52.49 -0.42 1.02 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -31.67 299.88 -4.69 -36.35 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -2.74 Total: 0.33 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.84 Total: -6.40 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.76 Total: -23.94 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.47 Total: -20.29 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.11 Total: -6.50 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.67 -4.69 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798784574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.278 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds